Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 429 |
| AccB1I | GGYRCC | 1 cut(s) | 1288 |
| AccI | GTMKAC | 1 cut(s) | 52 |
| AccIII | TCCGGA | 1 cut(s) | 1570 |
| AciI | CCGC | 1 cut(s) | 755 |
| AclI | AACGTT | 1 cut(s) | 1372 |
| AclWI | GGATC | 6 cut(s) | 267, 999, 1318, 1343, 1558, 1589 |
| AcoI | YGGCCR | 1 cut(s) | 1260 |
| AcsI | RAATTY | 5 cut(s) | 139, 501, 673, 1139, 1396 |
| AcyI | GRCGYC | 1 cut(s) | 1489 |
| AfaI | GTAC | 5 cut(s) | 662, 747, 952, 1041, 1176 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 717, 1249, 1299, 1452, 1456, 1491, 1492 |
| AgsI | TTSAA | 5 cut(s) | 221, 734, 875, 1378, 1402 |
| AhlI | ACTAGT | 1 cut(s) | 322 |
| AjnI | CCWGG | 3 cut(s) | 656, 1210, 1293 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 760, 792 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1679, 1711 |
| AluBI | AGCT | 9 cut(s) | 63, 206, 310, 785, 817, 1006, 1030, 1118, 1151 |
| AluI | AGCT | 9 cut(s) | 63, 206, 310, 785, 817, 1006, 1030, 1118, 1151 |
| Alw21I | GWGCWC | 1 cut(s) | 1368 |
| Alw26I | GTCTC | 2 cut(s) | 474, 911 |
| AlwI | GGATC | 6 cut(s) | 267, 999, 1318, 1343, 1558, 1589 |
| Aor13HI | TCCGGA | 1 cut(s) | 1570 |
| AoxI | GGCC | 8 cut(s) | 384, 740, 1228, 1235, 1260, 1482, 1533, 1557 |
| ApeKI | GCWGC | 5 cut(s) | 203, 353, 985, 1003, 1549 |
| ApoI | RAATTY | 5 cut(s) | 139, 501, 673, 1139, 1396 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1094, 1126 |
| AspLEI | GCGC | 1 cut(s) | 1218 |
| AspS9I | GGNCC | 4 cut(s) | 385, 1483, 1533, 1558 |
| AsuC2I | CCSGG | 1 cut(s) | 1493 |
| AsuHPI | GGTGA | 6 cut(s) | 148, 443, 696, 851, 1636, 1739 |
| AsuII | TTCGAA | 1 cut(s) | 766 |
| AxyI | CCTNAGG | 1 cut(s) | 124 |
| BaeGI | GKGCMC | 1 cut(s) | 1293 |
| BanI | GGYRCC | 1 cut(s) | 1288 |
| BanII | GRGCYC | 1 cut(s) | 1593 |
| Bbv12I | GWGCWC | 1 cut(s) | 1368 |
| BbvI | GCAGC | 5 cut(s) | 215, 365, 972, 1015, 1536 |
| BccI | CCATC | 9 cut(s) | 36, 715, 1030, 1321, 1334, 1446, 1511, 1549, 1607 |
| BceAI | ACGGC | 1 cut(s) | 896 |
| BciT130I | CCWGG | 3 cut(s) | 658, 1212, 1295 |
| BcnI | CCSGG | 1 cut(s) | 1493 |
| BcoDI | GTCTC | 2 cut(s) | 474, 911 |
| BcuI | ACTAGT | 1 cut(s) | 322 |
| BfaI | CTAG | 5 cut(s) | 323, 593, 1115, 1133, 1638 |
| BfuAI | ACCTGC | 1 cut(s) | 429 |
| BisI | GCNGC | 5 cut(s) | 204, 354, 986, 1004, 1550 |
| BlpI | GCTNAGC | 1 cut(s) | 64 |
| BlsI | GCNGC | 5 cut(s) | 205, 355, 987, 1005, 1551 |
| BmcAI | AGTACT | 2 cut(s) | 747, 952 |
| Bme1390I | CCNGG | 4 cut(s) | 658, 1212, 1295, 1493 |
| BmgT120I | GGNCC | 4 cut(s) | 385, 1483, 1533, 1558 |
| BmiI | GGNNCC | 2 cut(s) | 1290, 1697 |
| BmrFI | CCNGG | 4 cut(s) | 658, 1212, 1295, 1493 |
| BmsI | GCATC | 4 cut(s) | 676, 1062, 1422, 1518 |
| BpmI | CTGGAG | 1 cut(s) | 1194 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 64 |
| Bpu14I | TTCGAA | 1 cut(s) | 766 |
| BpuMI | CCSGG | 1 cut(s) | 1493 |
| Bsa29I | ATCGAT | 1 cut(s) | 1338 |
| BsaBI | GATNNNNATC | 1 cut(s) | 371 |
| BsaHI | GRCGYC | 1 cut(s) | 1489 |
| BsaJI | CCNNGG | 3 cut(s) | 1211, 1293, 1468 |
| BsaWI | WCCGGW | 1 cut(s) | 1570 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 717, 1249, 1299, 1452, 1456, 1491, 1492 |
| Bse1I | ACTGG | 3 cut(s) | 743, 1225, 1546 |
| Bse21I | CCTNAGG | 1 cut(s) | 124 |
| Bse3DI | GCAATG | 2 cut(s) | 847, 1231 |
| Bse8I | GATNNNNATC | 1 cut(s) | 371 |
| BseAI | TCCGGA | 1 cut(s) | 1570 |
| BseBI | CCWGG | 3 cut(s) | 658, 1212, 1295 |
| BseCI | ATCGAT | 1 cut(s) | 1338 |
| BseDI | CCNNGG | 3 cut(s) | 1211, 1293, 1468 |
| BseGI | GGATG | 3 cut(s) | 691, 707, 865 |
| BseJI | GATNNNNATC | 1 cut(s) | 371 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 717, 1249, 1299, 1452, 1456, 1491, 1492 |
| BseMI | GCAATG | 2 cut(s) | 847, 1231 |
| BseMII | CTCAG | 5 cut(s) | 78, 138, 1152, 1419, 1518 |
| BseNI | ACTGG | 3 cut(s) | 743, 1225, 1546 |
| BseSI | GKGCMC | 1 cut(s) | 1293 |
| BseXI | GCAGC | 5 cut(s) | 215, 365, 972, 1015, 1536 |
| BsgI | GTGCAG | 2 cut(s) | 372, 532 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1468 |
| BshFI | GGCC | 8 cut(s) | 386, 742, 1230, 1237, 1262, 1484, 1535, 1559 |
| BshNI | GGYRCC | 1 cut(s) | 1288 |
| BshVI | ATCGAT | 1 cut(s) | 1338 |
| BsiEI | CGRYCG | 1 cut(s) | 1468 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1368 |
| BsiSI | CCGG | 3 cut(s) | 1263, 1492, 1571 |
| BslFI | GGGAC | 1 cut(s) | 1096 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 717, 1249, 1299, 1452, 1456, 1491, 1492 |
| BsmAI | GTCTC | 2 cut(s) | 474, 911 |
| BsmFI | GGGAC | 1 cut(s) | 1096 |
| BsmI | GAATGC | 1 cut(s) | 726 |
| BsnI | GGCC | 8 cut(s) | 386, 742, 1230, 1237, 1262, 1484, 1535, 1559 |
| Bsp119I | TTCGAA | 1 cut(s) | 766 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1293, 1368, 1593 |
| Bsp13I | TCCGGA | 1 cut(s) | 1570 |
| Bsp143I | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 64 |
| BspACI | CCGC | 1 cut(s) | 755 |
| BspANI | GGCC | 8 cut(s) | 386, 742, 1230, 1237, 1262, 1484, 1535, 1559 |
| BspCNI | CTCAG | 5 cut(s) | 77, 137, 1153, 1420, 1519 |
| BspDI | ATCGAT | 1 cut(s) | 1338 |
| BspEI | TCCGGA | 1 cut(s) | 1570 |
| BspLI | GGNNCC | 2 cut(s) | 1290, 1697 |
| BspMI | ACCTGC | 1 cut(s) | 429 |
| BspPI | GGATC | 6 cut(s) | 267, 999, 1318, 1343, 1558, 1589 |
| BspQI | GCTCTTC | 1 cut(s) | 716 |
| BspT104I | TTCGAA | 1 cut(s) | 766 |
| BspT107I | GGYRCC | 1 cut(s) | 1288 |
| BsrDI | GCAATG | 2 cut(s) | 847, 1231 |
| BsrI | ACTGG | 3 cut(s) | 743, 1225, 1546 |
| BssECI | CCNNGG | 3 cut(s) | 1211, 1293, 1468 |
| BssMI | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| BssNAI | GTATAC | 1 cut(s) | 53 |
| BssNI | GRCGYC | 1 cut(s) | 1489 |
| Bst1107I | GTATAC | 1 cut(s) | 53 |
| Bst2UI | CCWGG | 3 cut(s) | 658, 1212, 1295 |
| Bst4CI | ACNGT | 5 cut(s) | 402, 1044, 1170, 1691, 1714 |
| Bst6I | CTCTTC | 1 cut(s) | 716 |
| BstACI | GRCGYC | 1 cut(s) | 1489 |
| BstBI | TTCGAA | 1 cut(s) | 766 |
| BstC8I | GCNNGC | 2 cut(s) | 787, 1355 |
| BstDEI | CTNAG | 8 cut(s) | 64, 124, 347, 669, 1155, 1161, 1428, 1527 |
| BstF5I | GGATG | 3 cut(s) | 691, 707, 865 |
| BstHHI | GCGC | 1 cut(s) | 1218 |
| BstKTI | GATC | 9 cut(s) | 275, 844, 994, 1313, 1338, 1566, 1584, 1600, 1676 |
| BstMAI | GTCTC | 2 cut(s) | 474, 911 |
| BstMBI | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| BstMCI | CGRYCG | 1 cut(s) | 1468 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 290, 858, 1009, 1124, 1350, 1363, 1470, 1532 |
| BstNI | CCWGG | 3 cut(s) | 658, 1212, 1295 |
| BstSCI | CCNGG | 4 cut(s) | 656, 1210, 1293, 1491 |
| BstSLI | GKGCMC | 1 cut(s) | 1293 |
| BstV1I | GCAGC | 5 cut(s) | 215, 365, 972, 1015, 1536 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| BstZ17I | GTATAC | 1 cut(s) | 53 |
| Bsu15I | ATCGAT | 1 cut(s) | 1338 |
| Bsu36I | CCTNAGG | 1 cut(s) | 124 |
| BsuRI | GGCC | 8 cut(s) | 386, 742, 1230, 1237, 1262, 1484, 1535, 1559 |
| BsuTUI | ATCGAT | 1 cut(s) | 1338 |
| BtsCI | GGATG | 3 cut(s) | 691, 707, 865 |
| BtsI | GCAGTG | 1 cut(s) | 387 |
| BtsIMutI | CAGTG | 5 cut(s) | 387, 398, 483, 1218, 1696 |
| BveI | ACCTGC | 1 cut(s) | 429 |
| Cac8I | GCNNGC | 2 cut(s) | 787, 1355 |
| CfoI | GCGC | 1 cut(s) | 1218 |
| Cfr13I | GGNCC | 4 cut(s) | 385, 1483, 1533, 1558 |
| ClaI | ATCGAT | 1 cut(s) | 1338 |
| CseI | GACGC | 2 cut(s) | 1254, 1497 |
| Csp6I | GTAC | 5 cut(s) | 661, 746, 951, 1040, 1175 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1672, 1707 |
| CviAII | CATG | 8 cut(s) | 236, 394, 589, 887, 995, 1128, 1249, 1408 |
| CviQI | GTAC | 5 cut(s) | 661, 746, 951, 1040, 1175 |
| DdeI | CTNAG | 8 cut(s) | 64, 124, 347, 669, 1155, 1161, 1428, 1527 |
| DpnI | GATC | 9 cut(s) | 274, 843, 993, 1312, 1337, 1565, 1583, 1599, 1675 |
| DpnII | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| DraI | TTTAAA | 1 cut(s) | 562 |
| EaeI | YGGCCR | 1 cut(s) | 1260 |
| Eam1104I | CTCTTC | 1 cut(s) | 716 |
| EarI | CTCTTC | 1 cut(s) | 716 |
| Eco24I | GRGCYC | 1 cut(s) | 1593 |
| Eco81I | CCTNAGG | 1 cut(s) | 124 |
| EcoRI | GAATTC | 1 cut(s) | 673 |
| EcoRII | CCWGG | 3 cut(s) | 656, 1210, 1293 |
| EcoT38I | GRGCYC | 1 cut(s) | 1593 |
| FaeI | CATG | 8 cut(s) | 239, 397, 592, 890, 998, 1131, 1252, 1411 |
| FaqI | GGGAC | 1 cut(s) | 1096 |
| FatI | CATG | 8 cut(s) | 235, 393, 588, 886, 994, 1127, 1248, 1407 |
| FauI | CCCGC | 1 cut(s) | 748 |
| FblI | GTMKAC | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 5 cut(s) | 204, 354, 986, 1004, 1550 |
| FokI | GGATG | 3 cut(s) | 694, 698, 852 |
| FriOI | GRGCYC | 1 cut(s) | 1593 |
| Fsp4HI | GCNGC | 5 cut(s) | 204, 354, 986, 1004, 1550 |
| FspBI | CTAG | 5 cut(s) | 323, 593, 1115, 1133, 1638 |
| GlaI | GCGC | 1 cut(s) | 1217 |
| GluI | GCNGC | 5 cut(s) | 204, 354, 986, 1004, 1550 |
| GsuI | CTGGAG | 1 cut(s) | 1194 |
| HaeIII | GGCC | 8 cut(s) | 386, 742, 1230, 1237, 1262, 1484, 1535, 1559 |
| HapII | CCGG | 3 cut(s) | 1263, 1492, 1571 |
| HgaI | GACGC | 2 cut(s) | 1254, 1497 |
| HhaI | GCGC | 1 cut(s) | 1218 |
| Hin1I | GRCGYC | 1 cut(s) | 1489 |
| Hin1II | CATG | 8 cut(s) | 239, 397, 592, 890, 998, 1131, 1252, 1411 |
| Hin6I | GCGC | 1 cut(s) | 1216 |
| HinP1I | GCGC | 1 cut(s) | 1216 |
| HindIII | AAGCTT | 1 cut(s) | 1028 |
| HinfI | GANTC | 6 cut(s) | 99, 367, 552, 701, 1496, 1627 |
| HpaII | CCGG | 3 cut(s) | 1263, 1492, 1571 |
| HphI | GGTGA | 6 cut(s) | 148, 443, 696, 851, 1636, 1739 |
| Hpy166II | GTNNAC | 4 cut(s) | 53, 188, 822, 1425 |
| Hpy188I | TCNGA | 6 cut(s) | 147, 213, 793, 1035, 1451, 1459 |
| Hpy188III | TCNNGA | 2 cut(s) | 126, 1571 |
| Hpy8I | GTNNAC | 4 cut(s) | 53, 188, 822, 1425 |
| Hpy99I | CGWCG | 2 cut(s) | 1248, 1491 |
| HpyCH4III | ACNGT | 5 cut(s) | 402, 1044, 1170, 1691, 1714 |
| HpyCH4IV | ACGT | 1 cut(s) | 1372 |
| HpyCH4V | TGCA | 9 cut(s) | 41, 353, 513, 641, 689, 847, 897, 1003, 1393 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 290, 858, 1009, 1124, 1350, 1363, 1470, 1532 |
| HpyF3I | CTNAG | 8 cut(s) | 64, 124, 347, 669, 1155, 1161, 1428, 1527 |
| HpySE526I | ACGT | 1 cut(s) | 1372 |
| Hsp92I | GRCGYC | 1 cut(s) | 1489 |
| Hsp92II | CATG | 8 cut(s) | 239, 397, 592, 890, 998, 1131, 1252, 1411 |
| HspAI | GCGC | 1 cut(s) | 1216 |
| Kpn2I | TCCGGA | 1 cut(s) | 1570 |
| Kzo9I | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| LguI | GCTCTTC | 1 cut(s) | 716 |
| LmnI | GCTCC | 2 cut(s) | 232, 963 |
| Lsp1109I | GCAGC | 5 cut(s) | 215, 365, 972, 1015, 1536 |
| LweI | GCATC | 4 cut(s) | 676, 1062, 1422, 1518 |
| MaeI | CTAG | 5 cut(s) | 323, 593, 1115, 1133, 1638 |
| MaeII | ACGT | 1 cut(s) | 1372 |
| MaeIII | GTNAC | 2 cut(s) | 396, 1727 |
| MalI | GATC | 9 cut(s) | 274, 843, 993, 1312, 1337, 1565, 1583, 1599, 1675 |
| MboI | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| MboII | GAAGA | 7 cut(s) | 282, 722, 733, 887, 1148, 1315, 1526 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MhlI | GDGCHC | 3 cut(s) | 1293, 1368, 1593 |
| MluCI | AATT | 8 cut(s) | 139, 197, 328, 455, 501, 673, 1139, 1396 |
| MmeI | TCCRAC | 1 cut(s) | 1437 |
| MroI | TCCGGA | 1 cut(s) | 1570 |
| MseI | TTAA | 5 cut(s) | 177, 228, 561, 944, 975 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1126 |
| MspI | CCGG | 3 cut(s) | 1263, 1492, 1571 |
| MspR9I | CCNGG | 4 cut(s) | 658, 1212, 1295, 1493 |
| Mva1269I | GAATGC | 1 cut(s) | 726 |
| MvaI | CCWGG | 3 cut(s) | 658, 1212, 1295 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 290, 858, 1009, 1124, 1350, 1363, 1470, 1532 |
| NciI | CCSGG | 1 cut(s) | 1493 |
| NdeII | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| NlaIII | CATG | 8 cut(s) | 239, 397, 592, 890, 998, 1131, 1252, 1411 |
| NlaIV | GGNNCC | 2 cut(s) | 1290, 1697 |
| NmuCI | GTSAC | 2 cut(s) | 396, 1727 |
| NspV | TTCGAA | 1 cut(s) | 766 |
| PciSI | GCTCTTC | 1 cut(s) | 716 |
| PctI | GAATGC | 1 cut(s) | 726 |
| PfeI | GAWTC | 6 cut(s) | 99, 367, 552, 701, 1496, 1627 |
| PkrI | GCNGC | 5 cut(s) | 205, 355, 987, 1005, 1551 |
| Psp1406I | AACGTT | 1 cut(s) | 1372 |
| Psp6I | CCWGG | 3 cut(s) | 656, 1210, 1293 |
| PspGI | CCWGG | 3 cut(s) | 656, 1210, 1293 |
| PspN4I | GGNNCC | 2 cut(s) | 1290, 1697 |
| PspPI | GGNCC | 4 cut(s) | 385, 1483, 1533, 1558 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| RsaI | GTAC | 5 cut(s) | 662, 747, 952, 1041, 1176 |
| RsaNI | GTAC | 5 cut(s) | 661, 746, 951, 1040, 1175 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1126 |
| SapI | GCTCTTC | 1 cut(s) | 716 |
| SaqAI | TTAA | 5 cut(s) | 177, 228, 561, 944, 975 |
| SatI | GCNGC | 5 cut(s) | 204, 354, 986, 1004, 1550 |
| Sau3AI | GATC | 9 cut(s) | 272, 841, 991, 1310, 1335, 1563, 1581, 1597, 1673 |
| Sau96I | GGNCC | 4 cut(s) | 385, 1483, 1533, 1558 |
| ScaI | AGTACT | 2 cut(s) | 747, 952 |
| ScrFI | CCNGG | 4 cut(s) | 658, 1212, 1295, 1493 |
| SduI | GDGCHC | 3 cut(s) | 1293, 1368, 1593 |
| SfaNI | GCATC | 4 cut(s) | 676, 1062, 1422, 1518 |
| SfuI | TTCGAA | 1 cut(s) | 766 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1126 |
| SmlI | CTYRAG | 1 cut(s) | 9 |
| SmoI | CTYRAG | 1 cut(s) | 9 |
| SpeI | ACTAGT | 1 cut(s) | 322 |
| Sse9I | AATT | 8 cut(s) | 139, 197, 328, 455, 501, 673, 1139, 1396 |
| SsiI | CCGC | 1 cut(s) | 755 |
| SspMI | CTAG | 5 cut(s) | 323, 593, 1115, 1133, 1638 |
| StyD4I | CCNGG | 4 cut(s) | 656, 1210, 1293, 1491 |
| TaaI | ACNGT | 5 cut(s) | 402, 1044, 1170, 1691, 1714 |
| TaiI | ACGT | 1 cut(s) | 1375 |
| TaqII | GACCGA | 1 cut(s) | 1482 |
| TasI | AATT | 8 cut(s) | 139, 197, 328, 455, 501, 673, 1139, 1396 |
| TatI | WGTACW | 2 cut(s) | 745, 950 |
| TfiI | GAWTC | 6 cut(s) | 99, 367, 552, 701, 1496, 1627 |
| Tru1I | TTAA | 5 cut(s) | 177, 228, 561, 944, 975 |
| Tru9I | TTAA | 5 cut(s) | 177, 228, 561, 944, 975 |
| TscAI | CASTG | 5 cut(s) | 387, 405, 490, 1225, 1696 |
| TseFI | GTSAC | 2 cut(s) | 396, 1727 |
| TseI | GCWGC | 5 cut(s) | 203, 353, 985, 1003, 1549 |
| Tsp45I | GTSAC | 2 cut(s) | 396, 1727 |
| TspDTI | ATGAA | 9 cut(s) | 129, 195, 275, 456, 494, 512, 558, 666, 1110 |
| TspRI | CASTG | 5 cut(s) | 387, 405, 490, 1225, 1696 |
| XapI | RAATTY | 5 cut(s) | 139, 501, 673, 1139, 1396 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 714 |
| XmiI | GTMKAC | 1 cut(s) | 52 |
| XspI | CTAG | 5 cut(s) | 323, 593, 1115, 1133, 1638 |
| ZrmI | AGTACT | 2 cut(s) | 747, 952 |