ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DIOX_N | PF14226 | 163 - 241 | 8.9e-10 | non-haem dioxygenase in morphine synthesis N-terminal |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 272, 684 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccI | GTMKAC | 1 cut(s) | 147 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 2 cut(s) | 664, 902 |
| AcsI | RAATTY | 4 cut(s) | 470, 514, 634, 701 |
| AcuI | CTGAAG | 2 cut(s) | 48, 820 |
| AdeI | CACNNNGTG | 1 cut(s) | 332 |
| AfaI | GTAC | 1 cut(s) | 453 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 332, 771 |
| AgsI | TTSAA | 3 cut(s) | 44, 787, 824 |
| AhlI | ACTAGT | 1 cut(s) | 910 |
| AleI | CACNNNNGTG | 2 cut(s) | 767, 837 |
| AluBI | AGCT | 8 cut(s) | 280, 338, 344, 367, 385, 582, 782, 959 |
| AluI | AGCT | 8 cut(s) | 280, 338, 344, 367, 385, 582, 782, 959 |
| Alw21I | GWGCWC | 1 cut(s) | 238 |
| Alw26I | GTCTC | 3 cut(s) | 258, 470, 851 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 727 |
| AoxI | GGCC | 1 cut(s) | 716 |
| ApeKI | GCWGC | 4 cut(s) | 121, 338, 341, 559 |
| ApoI | RAATTY | 4 cut(s) | 470, 514, 634, 701 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 897 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 1 cut(s) | 680 |
| AvaII | GGWCC | 1 cut(s) | 595 |
| BaeGI | GKGCMC | 1 cut(s) | 834 |
| Bbv12I | GWGCWC | 1 cut(s) | 238 |
| BbvCI | CCTCAGC | 1 cut(s) | 720 |
| BbvI | GCAGC | 4 cut(s) | 133, 325, 353, 546 |
| BccI | CCATC | 1 cut(s) | 866 |
| BceAI | ACGGC | 1 cut(s) | 517 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 124, 158 |
| BclI | TGATCA | 1 cut(s) | 801 |
| BcoDI | GTCTC | 3 cut(s) | 258, 470, 851 |
| BcuI | ACTAGT | 1 cut(s) | 910 |
| BfaI | CTAG | 2 cut(s) | 624, 911 |
| BfmI | CTRYAG | 2 cut(s) | 339, 610 |
| BisI | GCNGC | 4 cut(s) | 122, 339, 342, 560 |
| BlsI | GCNGC | 4 cut(s) | 123, 340, 343, 561 |
| Bme18I | GGWCC | 1 cut(s) | 595 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 2 cut(s) | 597, 894 |
| BmrI | ACTGGG | 2 cut(s) | 104, 113 |
| BmsI | GCATC | 3 cut(s) | 144, 157, 658 |
| BmuI | ACTGGG | 2 cut(s) | 104, 113 |
| BpmI | CTGGAG | 1 cut(s) | 549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 720 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 4 cut(s) | 79, 254, 499, 531 |
| BsaWI | WCCGGW | 1 cut(s) | 629 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 332, 771 |
| Bse1I | ACTGG | 3 cut(s) | 99, 108, 865 |
| BseDI | CCNNGG | 4 cut(s) | 79, 254, 499, 531 |
| BseGI | GGATG | 5 cut(s) | 22, 135, 541, 673, 877 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 332, 771 |
| BseMII | CTCAG | 2 cut(s) | 582, 734 |
| BseNI | ACTGG | 3 cut(s) | 99, 108, 865 |
| BseSI | GKGCMC | 1 cut(s) | 834 |
| BseXI | GCAGC | 4 cut(s) | 133, 325, 353, 546 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| BshFI | GGCC | 1 cut(s) | 718 |
| BsiHKAI | GWGCWC | 1 cut(s) | 238 |
| BsiSI | CCGG | 1 cut(s) | 630 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 332, 771 |
| BsmAI | GTCTC | 3 cut(s) | 258, 470, 851 |
| BsmBI | CGTCTC | 1 cut(s) | 470 |
| BsnI | GGCC | 1 cut(s) | 718 |
| Bsp1286I | GDGCHC | 2 cut(s) | 238, 834 |
| Bsp143I | GATC | 2 cut(s) | 801, 939 |
| Bsp19I | CCATGG | 1 cut(s) | 531 |
| BspACI | CCGC | 2 cut(s) | 664, 902 |
| BspANI | GGCC | 1 cut(s) | 718 |
| BspCNI | CTCAG | 2 cut(s) | 583, 733 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspLI | GGNNCC | 2 cut(s) | 597, 894 |
| BspMAI | CTGCAG | 2 cut(s) | 343, 614 |
| BsrI | ACTGG | 3 cut(s) | 99, 108, 865 |
| BssECI | CCNNGG | 4 cut(s) | 79, 254, 499, 531 |
| BssMI | GATC | 2 cut(s) | 801, 939 |
| BssT1I | CCWWGG | 2 cut(s) | 254, 531 |
| Bst4CI | ACNGT | 1 cut(s) | 202 |
| Bst6I | CTCTTC | 1 cut(s) | 903 |
| BstC8I | GCNNGC | 3 cut(s) | 483, 580, 614 |
| BstDEI | CTNAG | 3 cut(s) | 591, 720, 848 |
| BstDSI | CCRYGG | 3 cut(s) | 79, 499, 531 |
| BstEII | GGTNACC | 1 cut(s) | 4 |
| BstF5I | GGATG | 5 cut(s) | 22, 135, 541, 673, 877 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 2 cut(s) | 804, 942 |
| BstMAI | GTCTC | 3 cut(s) | 258, 470, 851 |
| BstMBI | GATC | 2 cut(s) | 801, 939 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 233 |
| BstNSI | RCATGY | 2 cut(s) | 458, 749 |
| BstPI | GGTNACC | 1 cut(s) | 4 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 610 |
| BstSLI | GKGCMC | 1 cut(s) | 834 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 4 cut(s) | 133, 325, 353, 546 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 860 |
| BsuRI | GGCC | 1 cut(s) | 718 |
| BtgI | CCRYGG | 3 cut(s) | 79, 499, 531 |
| BtsCI | GGATG | 5 cut(s) | 22, 135, 541, 673, 877 |
| BtsIMutI | CAGTG | 3 cut(s) | 92, 811, 844 |
| Cac8I | GCNNGC | 3 cut(s) | 483, 580, 614 |
| CaiI | CAGNNNCTG | 1 cut(s) | 727 |
| CfoI | GCGC | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| CseI | GACGC | 1 cut(s) | 487 |
| Csp6I | GTAC | 1 cut(s) | 452 |
| CviAII | CATG | 7 cut(s) | 224, 303, 330, 455, 524, 532, 746 |
| CviQI | GTAC | 1 cut(s) | 452 |
| DdeI | CTNAG | 3 cut(s) | 591, 720, 848 |
| DpnI | GATC | 2 cut(s) | 803, 941 |
| DpnII | GATC | 2 cut(s) | 801, 939 |
| DraIII | CACNNNGTG | 1 cut(s) | 332 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 272, 684 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 272, 684 |
| Eam1104I | CTCTTC | 1 cut(s) | 903 |
| EarI | CTCTTC | 1 cut(s) | 903 |
| Eco130I | CCWWGG | 2 cut(s) | 254, 531 |
| Eco32I | GATATC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 595 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 820 |
| Eco91I | GGTNACC | 1 cut(s) | 4 |
| EcoO109I | RGGNCCY | 1 cut(s) | 595 |
| EcoO65I | GGTNACC | 1 cut(s) | 4 |
| EcoRV | GATATC | 1 cut(s) | 361 |
| EcoT14I | CCWWGG | 2 cut(s) | 254, 531 |
| ErhI | CCWWGG | 2 cut(s) | 254, 531 |
| Esp3I | CGTCTC | 1 cut(s) | 470 |
| FaeI | CATG | 7 cut(s) | 227, 306, 333, 458, 527, 535, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 566, 598 |
| FatI | CATG | 7 cut(s) | 223, 302, 329, 454, 523, 531, 745 |
| FauI | CCCGC | 1 cut(s) | 657 |
| FbaI | TGATCA | 1 cut(s) | 801 |
| FblI | GTMKAC | 1 cut(s) | 147 |
| Fnu4HI | GCNGC | 4 cut(s) | 122, 339, 342, 560 |
| FokI | GGATG | 5 cut(s) | 9, 122, 548, 680, 884 |
| Fsp4HI | GCNGC | 4 cut(s) | 122, 339, 342, 560 |
| FspBI | CTAG | 2 cut(s) | 624, 911 |
| GlaI | GCGC | 1 cut(s) | 228 |
| GluI | GCNGC | 4 cut(s) | 122, 339, 342, 560 |
| GsuI | CTGGAG | 1 cut(s) | 549 |
| HaeIII | GGCC | 1 cut(s) | 718 |
| HapII | CCGG | 1 cut(s) | 630 |
| HgaI | GACGC | 1 cut(s) | 487 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1II | CATG | 7 cut(s) | 227, 306, 333, 458, 527, 535, 749 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HincII | GTYRAC | 1 cut(s) | 919 |
| HindII | GTYRAC | 1 cut(s) | 919 |
| HindIII | AAGCTT | 3 cut(s) | 278, 365, 580 |
| HinfI | GANTC | 3 cut(s) | 40, 181, 436 |
| HpaI | GTTAAC | 1 cut(s) | 919 |
| HpaII | CCGG | 1 cut(s) | 630 |
| HphI | GGTGA | 1 cut(s) | 680 |
| Hpy166II | GTNNAC | 3 cut(s) | 101, 148, 919 |
| Hpy188I | TCNGA | 5 cut(s) | 196, 465, 511, 592, 677 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 566, 740 |
| Hpy8I | GTNNAC | 3 cut(s) | 101, 148, 919 |
| HpyAV | CCTTC | 3 cut(s) | 82, 257, 803 |
| HpyCH4III | ACNGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 7 cut(s) | 121, 135, 341, 433, 485, 523, 612 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 233 |
| HpyF3I | CTNAG | 3 cut(s) | 591, 720, 848 |
| Hsp92II | CATG | 7 cut(s) | 227, 306, 333, 458, 527, 535, 749 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Ksp22I | TGATCA | 1 cut(s) | 801 |
| KspAI | GTTAAC | 1 cut(s) | 919 |
| Kzo9I | GATC | 2 cut(s) | 801, 939 |
| LmnI | GCTCC | 1 cut(s) | 335 |
| LpnPI | CCDG | 9 cut(s) | 39, 80, 89, 444, 529, 579, 598, 643, 846 |
| Lsp1109I | GCAGC | 4 cut(s) | 133, 325, 353, 546 |
| LweI | GCATC | 3 cut(s) | 144, 157, 658 |
| MaeI | CTAG | 2 cut(s) | 624, 911 |
| MaeIII | GTNAC | 3 cut(s) | 4, 686, 933 |
| MalI | GATC | 2 cut(s) | 803, 941 |
| MboI | GATC | 2 cut(s) | 801, 939 |
| MboII | GAAGA | 3 cut(s) | 41, 577, 890 |
| MhlI | GDGCHC | 2 cut(s) | 238, 834 |
| MluCI | AATT | 7 cut(s) | 308, 398, 425, 470, 514, 634, 701 |
| MlyI | GAGTC | 1 cut(s) | 175 |
| MmeI | TCCRAC | 1 cut(s) | 700 |
| MnlI | CCTC | 9 cut(s) | 150, 168, 562, 573, 586, 683, 729, 765, 906 |
| MroXI | GAANNNNTTC | 1 cut(s) | 897 |
| MseI | TTAA | 3 cut(s) | 732, 867, 918 |
| MslI | CAYNNNNRTG | 3 cut(s) | 222, 767, 837 |
| MspA1I | CMGCKG | 1 cut(s) | 344 |
| MspI | CCGG | 1 cut(s) | 630 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 233 |
| NcoI | CCATGG | 1 cut(s) | 531 |
| NdeII | GATC | 2 cut(s) | 801, 939 |
| NlaIII | CATG | 7 cut(s) | 227, 306, 333, 458, 527, 535, 749 |
| NlaIV | GGNNCC | 2 cut(s) | 597, 894 |
| NmuCI | GTSAC | 2 cut(s) | 4, 686 |
| NspI | RCATGY | 2 cut(s) | 458, 749 |
| OliI | CACNNNNGTG | 2 cut(s) | 767, 837 |
| PdmI | GAANNNNTTC | 1 cut(s) | 897 |
| PfeI | GAWTC | 2 cut(s) | 40, 436 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 123, 340, 343, 561 |
| PleI | GAGTC | 1 cut(s) | 175 |
| PpsI | GAGTC | 1 cut(s) | 175 |
| PpuMI | RGGWCCY | 1 cut(s) | 595 |
| Psp5II | RGGWCCY | 1 cut(s) | 595 |
| PspEI | GGTNACC | 1 cut(s) | 4 |
| PspN4I | GGNNCC | 2 cut(s) | 597, 894 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PspPPI | RGGWCCY | 1 cut(s) | 595 |
| PstI | CTGCAG | 2 cut(s) | 343, 614 |
| PstNI | CAGNNNCTG | 1 cut(s) | 727 |
| PvuII | CAGCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 453 |
| RsaNI | GTAC | 1 cut(s) | 452 |
| RseI | CAYNNNNRTG | 3 cut(s) | 222, 767, 837 |
| SaqAI | TTAA | 3 cut(s) | 732, 867, 918 |
| SatI | GCNGC | 4 cut(s) | 122, 339, 342, 560 |
| Sau3AI | GATC | 2 cut(s) | 801, 939 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| SchI | GAGTC | 1 cut(s) | 175 |
| SduI | GDGCHC | 2 cut(s) | 238, 834 |
| SfaNI | GCATC | 3 cut(s) | 144, 157, 658 |
| SfcI | CTRYAG | 2 cut(s) | 339, 610 |
| SinI | GGWCC | 1 cut(s) | 595 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 222, 767, 837 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| SpeI | ACTAGT | 1 cut(s) | 910 |
| Sse9I | AATT | 7 cut(s) | 308, 398, 425, 470, 514, 634, 701 |
| SsiI | CCGC | 2 cut(s) | 664, 902 |
| SspMI | CTAG | 2 cut(s) | 624, 911 |
| StyI | CCWWGG | 2 cut(s) | 254, 531 |
| TaaI | ACNGT | 1 cut(s) | 202 |
| TaqI | TCGA | 3 cut(s) | 75, 250, 739 |
| TasI | AATT | 7 cut(s) | 308, 398, 425, 470, 514, 634, 701 |
| TfiI | GAWTC | 2 cut(s) | 40, 436 |
| Tru1I | TTAA | 3 cut(s) | 732, 867, 918 |
| Tru9I | TTAA | 3 cut(s) | 732, 867, 918 |
| TscAI | CASTG | 3 cut(s) | 99, 811, 844 |
| TseFI | GTSAC | 2 cut(s) | 4, 686 |
| TseI | GCWGC | 4 cut(s) | 121, 338, 341, 559 |
| Tsp45I | GTSAC | 2 cut(s) | 4, 686 |
| TspDTI | ATGAA | 3 cut(s) | 644, 694, 858 |
| TspRI | CASTG | 3 cut(s) | 99, 811, 844 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 595 |
| XapI | RAATTY | 4 cut(s) | 470, 514, 634, 701 |
| XceI | RCATGY | 2 cut(s) | 458, 749 |
| XmiI | GTMKAC | 1 cut(s) | 147 |
| XmnI | GAANNNNTTC | 1 cut(s) | 897 |
| XspI | CTAG | 2 cut(s) | 624, 911 |