Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 115, 896 |
| AciI | CCGC | 3 cut(s) | 464, 496, 638 |
| AclWI | GGATC | 1 cut(s) | 96 |
| AcsI | RAATTY | 3 cut(s) | 208, 276, 921 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AfaI | GTAC | 4 cut(s) | 425, 437, 913, 1101 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 623, 913, 1092 |
| AgsI | TTSAA | 6 cut(s) | 68, 101, 197, 395, 943, 1040 |
| AjnI | CCWGG | 2 cut(s) | 290, 907 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 265, 297, 625, 657 |
| AluBI | AGCT | 4 cut(s) | 371, 596, 678, 965 |
| AluI | AGCT | 4 cut(s) | 371, 596, 678, 965 |
| Alw21I | GWGCWC | 1 cut(s) | 1012 |
| Alw26I | GTCTC | 3 cut(s) | 12, 848, 1025 |
| AlwI | GGATC | 1 cut(s) | 96 |
| AoxI | GGCC | 3 cut(s) | 308, 429, 1107 |
| ApeKI | GCWGC | 2 cut(s) | 596, 675 |
| ApoI | RAATTY | 3 cut(s) | 208, 276, 921 |
| AspA2I | CCTAGG | 1 cut(s) | 1091 |
| AspS9I | GGNCC | 1 cut(s) | 904 |
| AvaII | GGWCC | 1 cut(s) | 904 |
| AvrII | CCTAGG | 1 cut(s) | 1091 |
| BaeGI | GKGCMC | 1 cut(s) | 538 |
| BanII | GRGCYC | 1 cut(s) | 1126 |
| Bbv12I | GWGCWC | 1 cut(s) | 1012 |
| BbvCI | CCTCAGC | 1 cut(s) | 507 |
| BbvI | GCAGC | 2 cut(s) | 583, 687 |
| BccI | CCATC | 5 cut(s) | 548, 826, 838, 1063, 1094 |
| BceAI | ACGGC | 1 cut(s) | 930 |
| BciT130I | CCWGG | 2 cut(s) | 292, 909 |
| BcoDI | GTCTC | 3 cut(s) | 12, 848, 1025 |
| BfaI | CTAG | 7 cut(s) | 57, 513, 524, 591, 966, 1092, 1119 |
| BglII | AGATCT | 2 cut(s) | 340, 874 |
| BisI | GCNGC | 2 cut(s) | 597, 676 |
| BlnI | CCTAGG | 1 cut(s) | 1091 |
| BlsI | GCNGC | 2 cut(s) | 598, 677 |
| BmcAI | AGTACT | 1 cut(s) | 437 |
| Bme1390I | CCNGG | 2 cut(s) | 292, 909 |
| Bme18I | GGWCC | 1 cut(s) | 904 |
| BmgT120I | GGNCC | 1 cut(s) | 904 |
| BmiI | GGNNCC | 2 cut(s) | 906, 987 |
| BmrFI | CCNGG | 2 cut(s) | 292, 909 |
| BmsI | GCATC | 2 cut(s) | 451, 1072 |
| BpmI | CTGGAG | 1 cut(s) | 403 |
| Bpu10I | CCTNAGC | 1 cut(s) | 507 |
| BsaJI | CCNNGG | 5 cut(s) | 311, 581, 900, 907, 1091 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 623, 913, 1092 |
| BseBI | CCWGG | 2 cut(s) | 292, 909 |
| BseDI | CCNNGG | 5 cut(s) | 311, 581, 900, 907, 1091 |
| BseGI | GGATG | 4 cut(s) | 466, 472, 1086, 1087 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 623, 913, 1092 |
| BseMII | CTCAG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 3 cut(s) | 851, 854, 1043 |
| BseSI | GKGCMC | 1 cut(s) | 538 |
| BseXI | GCAGC | 2 cut(s) | 583, 687 |
| BshFI | GGCC | 3 cut(s) | 310, 431, 1109 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1012 |
| BsiSI | CCGG | 1 cut(s) | 697 |
| BslFI | GGGAC | 1 cut(s) | 890 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 623, 913, 1092 |
| BsmAI | GTCTC | 3 cut(s) | 12, 848, 1025 |
| BsmFI | GGGAC | 1 cut(s) | 890 |
| BsnI | GGCC | 3 cut(s) | 310, 431, 1109 |
| Bsp1286I | GDGCHC | 3 cut(s) | 538, 1012, 1126 |
| Bsp1407I | TGTACA | 2 cut(s) | 423, 1099 |
| Bsp143I | GATC | 4 cut(s) | 88, 220, 340, 874 |
| Bsp19I | CCATGG | 1 cut(s) | 581 |
| BspACI | CCGC | 3 cut(s) | 464, 496, 638 |
| BspANI | GGCC | 3 cut(s) | 310, 431, 1109 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspHI | TCATGA | 1 cut(s) | 10 |
| BspLI | GGNNCC | 2 cut(s) | 906, 987 |
| BspPI | GGATC | 1 cut(s) | 96 |
| BsrGI | TGTACA | 2 cut(s) | 423, 1099 |
| BssECI | CCNNGG | 5 cut(s) | 311, 581, 900, 907, 1091 |
| BssMI | GATC | 4 cut(s) | 88, 220, 340, 874 |
| BssT1I | CCWWGG | 4 cut(s) | 311, 581, 900, 1091 |
| Bst2UI | CCWGG | 2 cut(s) | 292, 909 |
| Bst6I | CTCTTC | 1 cut(s) | 1120 |
| BstAUI | TGTACA | 2 cut(s) | 423, 1099 |
| BstC8I | GCNNGC | 2 cut(s) | 29, 308 |
| BstDEI | CTNAG | 2 cut(s) | 122, 507 |
| BstDSI | CCRYGG | 1 cut(s) | 581 |
| BstF5I | GGATG | 4 cut(s) | 466, 472, 1086, 1087 |
| BstKTI | GATC | 4 cut(s) | 91, 223, 343, 877 |
| BstMAI | GTCTC | 3 cut(s) | 12, 848, 1025 |
| BstMBI | GATC | 4 cut(s) | 88, 220, 340, 874 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 368 |
| BstNI | CCWGG | 2 cut(s) | 292, 909 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstSCI | CCNGG | 2 cut(s) | 290, 907 |
| BstSLI | GKGCMC | 1 cut(s) | 538 |
| BstV1I | GCAGC | 2 cut(s) | 583, 687 |
| BstX2I | RGATCY | 2 cut(s) | 340, 874 |
| BstYI | RGATCY | 2 cut(s) | 340, 874 |
| BsuRI | GGCC | 3 cut(s) | 310, 431, 1109 |
| BtgI | CCRYGG | 1 cut(s) | 581 |
| BtsCI | GGATG | 4 cut(s) | 466, 472, 1086, 1087 |
| BtsI | GCAGTG | 1 cut(s) | 1080 |
| BtsIMutI | CAGTG | 1 cut(s) | 1080 |
| Cac8I | GCNNGC | 2 cut(s) | 29, 308 |
| CciI | TCATGA | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 1 cut(s) | 904 |
| Csp6I | GTAC | 4 cut(s) | 424, 436, 912, 1100 |
| CviAII | CATG | 4 cut(s) | 11, 347, 582, 710 |
| CviQI | GTAC | 4 cut(s) | 424, 436, 912, 1100 |
| DdeI | CTNAG | 2 cut(s) | 122, 507 |
| DpnI | GATC | 4 cut(s) | 90, 222, 342, 876 |
| DpnII | GATC | 4 cut(s) | 88, 220, 340, 874 |
| Eam1104I | CTCTTC | 1 cut(s) | 1120 |
| EarI | CTCTTC | 1 cut(s) | 1120 |
| EciI | GGCGGA | 1 cut(s) | 511 |
| Eco130I | CCWWGG | 4 cut(s) | 311, 581, 900, 1091 |
| Eco24I | GRGCYC | 1 cut(s) | 1126 |
| Eco32I | GATATC | 2 cut(s) | 565, 721 |
| Eco47I | GGWCC | 1 cut(s) | 904 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 1 cut(s) | 904 |
| EcoRII | CCWGG | 2 cut(s) | 290, 907 |
| EcoRV | GATATC | 2 cut(s) | 565, 721 |
| EcoT14I | CCWWGG | 4 cut(s) | 311, 581, 900, 1091 |
| EcoT38I | GRGCYC | 1 cut(s) | 1126 |
| ErhI | CCWWGG | 4 cut(s) | 311, 581, 900, 1091 |
| FaeI | CATG | 4 cut(s) | 14, 350, 585, 713 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 102, 134 |
| FaqI | GGGAC | 1 cut(s) | 890 |
| FatI | CATG | 4 cut(s) | 10, 346, 581, 709 |
| FauI | CCCGC | 1 cut(s) | 631 |
| FauNDI | CATATG | 2 cut(s) | 178, 1104 |
| FblI | GTMKAC | 2 cut(s) | 115, 896 |
| Fnu4HI | GCNGC | 2 cut(s) | 597, 676 |
| FokI | GGATG | 4 cut(s) | 459, 473, 1073, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 1126 |
| Fsp4HI | GCNGC | 2 cut(s) | 597, 676 |
| FspBI | CTAG | 7 cut(s) | 57, 513, 524, 591, 966, 1092, 1119 |
| GluI | GCNGC | 2 cut(s) | 597, 676 |
| GsuI | CTGGAG | 1 cut(s) | 403 |
| HaeIII | GGCC | 3 cut(s) | 310, 431, 1109 |
| HapII | CCGG | 1 cut(s) | 697 |
| Hin1II | CATG | 4 cut(s) | 14, 350, 585, 713 |
| HincII | GTYRAC | 1 cut(s) | 116 |
| HindII | GTYRAC | 1 cut(s) | 116 |
| HinfI | GANTC | 6 cut(s) | 5, 333, 446, 467, 788, 856 |
| HpaII | CCGG | 1 cut(s) | 697 |
| Hpy166II | GTNNAC | 3 cut(s) | 116, 897, 953 |
| Hpy188I | TCNGA | 1 cut(s) | 93 |
| Hpy188III | TCNNGA | 5 cut(s) | 11, 77, 86, 443, 568 |
| Hpy8I | GTNNAC | 3 cut(s) | 116, 897, 953 |
| HpyAV | CCTTC | 7 cut(s) | 39, 314, 492, 640, 736, 750, 928 |
| HpyCH4IV | ACGT | 1 cut(s) | 538 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 306, 850, 865 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 368 |
| HpyF3I | CTNAG | 2 cut(s) | 122, 507 |
| HpySE526I | ACGT | 1 cut(s) | 538 |
| Hsp92II | CATG | 4 cut(s) | 14, 350, 585, 713 |
| Kzo9I | GATC | 4 cut(s) | 88, 220, 340, 874 |
| LmnI | GCTCC | 1 cut(s) | 604 |
| Lsp1109I | GCAGC | 2 cut(s) | 583, 687 |
| LweI | GCATC | 2 cut(s) | 451, 1072 |
| MaeI | CTAG | 7 cut(s) | 57, 513, 524, 591, 966, 1092, 1119 |
| MaeII | ACGT | 1 cut(s) | 538 |
| MalI | GATC | 4 cut(s) | 90, 222, 342, 876 |
| MboI | GATC | 4 cut(s) | 88, 220, 340, 874 |
| MboII | GAAGA | 4 cut(s) | 215, 441, 895, 1107 |
| MfeI | CAATTG | 2 cut(s) | 946, 1035 |
| MflI | RGATCY | 2 cut(s) | 340, 874 |
| MhlI | GDGCHC | 3 cut(s) | 538, 1012, 1126 |
| MluCI | AATT | 8 cut(s) | 197, 208, 276, 387, 395, 921, 946, 1035 |
| MlyI | GAGTC | 3 cut(s) | 14, 782, 850 |
| MmeI | TCCRAC | 4 cut(s) | 22, 500, 623, 1059 |
| MnlI | CCTC | 7 cut(s) | 317, 502, 620, 664, 829, 832, 1021 |
| MseI | TTAA | 4 cut(s) | 200, 354, 762, 810 |
| MslI | CAYNNNNRTG | 2 cut(s) | 234, 714 |
| MspA1I | CMGCKG | 1 cut(s) | 678 |
| MspI | CCGG | 1 cut(s) | 697 |
| MspR9I | CCNGG | 2 cut(s) | 292, 909 |
| MunI | CAATTG | 2 cut(s) | 946, 1035 |
| MvaI | CCWGG | 2 cut(s) | 292, 909 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 368 |
| NcoI | CCATGG | 1 cut(s) | 581 |
| NdeI | CATATG | 2 cut(s) | 178, 1104 |
| NdeII | GATC | 4 cut(s) | 88, 220, 340, 874 |
| NlaIII | CATG | 4 cut(s) | 14, 350, 585, 713 |
| NlaIV | GGNNCC | 2 cut(s) | 906, 987 |
| NmeAIII | GCCGAG | 1 cut(s) | 1105 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PagI | TCATGA | 1 cut(s) | 10 |
| PfeI | GAWTC | 3 cut(s) | 333, 446, 467 |
| PkrI | GCNGC | 2 cut(s) | 598, 677 |
| PleI | GAGTC | 3 cut(s) | 13, 782, 850 |
| PpsI | GAGTC | 3 cut(s) | 13, 782, 850 |
| PpuMI | RGGWCCY | 1 cut(s) | 904 |
| Psp5II | RGGWCCY | 1 cut(s) | 904 |
| Psp6I | CCWGG | 2 cut(s) | 290, 907 |
| PspGI | CCWGG | 2 cut(s) | 290, 907 |
| PspN4I | GGNNCC | 2 cut(s) | 906, 987 |
| PspPI | GGNCC | 1 cut(s) | 904 |
| PspPPI | RGGWCCY | 1 cut(s) | 904 |
| PsuI | RGATCY | 2 cut(s) | 340, 874 |
| PvuII | CAGCTG | 1 cut(s) | 678 |
| RsaI | GTAC | 4 cut(s) | 425, 437, 913, 1101 |
| RsaNI | GTAC | 4 cut(s) | 424, 436, 912, 1100 |
| RseI | CAYNNNNRTG | 2 cut(s) | 234, 714 |
| SalI | GTCGAC | 1 cut(s) | 114 |
| SaqAI | TTAA | 4 cut(s) | 200, 354, 762, 810 |
| SatI | GCNGC | 2 cut(s) | 597, 676 |
| Sau3AI | GATC | 4 cut(s) | 88, 220, 340, 874 |
| Sau96I | GGNCC | 1 cut(s) | 904 |
| ScaI | AGTACT | 1 cut(s) | 437 |
| SchI | GAGTC | 3 cut(s) | 14, 782, 850 |
| ScrFI | CCNGG | 2 cut(s) | 292, 909 |
| SduI | GDGCHC | 3 cut(s) | 538, 1012, 1126 |
| SfaNI | GCATC | 2 cut(s) | 451, 1072 |
| SinI | GGWCC | 1 cut(s) | 904 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 234, 714 |
| Sse9I | AATT | 8 cut(s) | 197, 208, 276, 387, 395, 921, 946, 1035 |
| SsiI | CCGC | 3 cut(s) | 464, 496, 638 |
| SspMI | CTAG | 7 cut(s) | 57, 513, 524, 591, 966, 1092, 1119 |
| StyD4I | CCNGG | 2 cut(s) | 290, 907 |
| StyI | CCWWGG | 4 cut(s) | 311, 581, 900, 1091 |
| TaiI | ACGT | 1 cut(s) | 541 |
| TaqI | TCGA | 2 cut(s) | 115, 754 |
| TasI | AATT | 8 cut(s) | 197, 208, 276, 387, 395, 921, 946, 1035 |
| TatI | WGTACW | 3 cut(s) | 423, 435, 1099 |
| TfiI | GAWTC | 3 cut(s) | 333, 446, 467 |
| Tru1I | TTAA | 4 cut(s) | 200, 354, 762, 810 |
| Tru9I | TTAA | 4 cut(s) | 200, 354, 762, 810 |
| TscAI | CASTG | 1 cut(s) | 1080 |
| TseI | GCWGC | 2 cut(s) | 596, 675 |
| TspDTI | ATGAA | 5 cut(s) | 269, 279, 677, 699, 718 |
| TspGWI | ACGGA | 1 cut(s) | 1050 |
| TspRI | CASTG | 1 cut(s) | 1080 |
| VpaK11BI | GGWCC | 1 cut(s) | 904 |
| XapI | RAATTY | 3 cut(s) | 208, 276, 921 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XmaJI | CCTAGG | 1 cut(s) | 1091 |
| XmiI | GTMKAC | 2 cut(s) | 115, 896 |
| XspI | CTAG | 7 cut(s) | 57, 513, 524, 591, 966, 1092, 1119 |
| ZrmI | AGTACT | 1 cut(s) | 437 |