Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ArgoN | PF16486 | 38 - 198 | 4.5e-23 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 210 - 258 | 3.3e-17 | Argonaute linker 1 domain |
| PAZ | PF02170 | 265 - 391 | 2.5e-26 | PAZ domain |
| ArgoL2 | PF16488 | 401 - 446 | 3e-09 | Argonaute linker 2 domain |
| Piwi | PF02171 | 545 - 837 | 2e-88 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2079 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2276 |
| AatII | GACGTC | 1 cut(s) | 1561 |
| Acc36I | ACCTGC | 2 cut(s) | 381, 1291 |
| Acc65I | GGTACC | 1 cut(s) | 1464 |
| AccB1I | GGYRCC | 1 cut(s) | 1464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 221 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccII | CGCG | 2 cut(s) | 411, 1041 |
| AciI | CCGC | 1 cut(s) | 411 |
| AclWI | GGATC | 6 cut(s) | 109, 396, 409, 1400, 2181, 2279 |
| AcoI | YGGCCR | 1 cut(s) | 2445 |
| AcsI | RAATTY | 7 cut(s) | 293, 793, 1330, 1381, 1438, 1506, 1660 |
| AcuI | CTGAAG | 2 cut(s) | 893, 2104 |
| AcyI | GRCGYC | 1 cut(s) | 1558 |
| AdeI | CACNNNGTG | 1 cut(s) | 1002 |
| AfaI | GTAC | 4 cut(s) | 905, 1288, 1466, 1981 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 87, 142, 221, 562, 1370, 1526 |
| AflIII | ACRYGT | 2 cut(s) | 73, 378 |
| AhlI | ACTAGT | 3 cut(s) | 1171, 1399, 2404 |
| AjiI | CACGTC | 1 cut(s) | 1255 |
| AjnI | CCWGG | 8 cut(s) | 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2153, 2185 |
| AleI | CACNNNNGTG | 1 cut(s) | 1763 |
| Alw21I | GWGCWC | 2 cut(s) | 1770, 2441 |
| Alw26I | GTCTC | 2 cut(s) | 626, 2525 |
| AlwI | GGATC | 6 cut(s) | 109, 396, 409, 1400, 2181, 2279 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2534 |
| AoxI | GGCC | 7 cut(s) | 720, 733, 1946, 2021, 2187, 2342, 2445 |
| ApeKI | GCWGC | 6 cut(s) | 500, 605, 1922, 1970, 2486, 2489 |
| ApoI | RAATTY | 7 cut(s) | 293, 793, 1330, 1381, 1438, 1506, 1660 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 937, 969 |
| AseI | ATTAAT | 1 cut(s) | 1779 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2406 |
| Asp718I | GGTACC | 1 cut(s) | 1464 |
| AspA2I | CCTAGG | 1 cut(s) | 1364 |
| AspLEI | GCGC | 2 cut(s) | 1732, 2464 |
| AspS9I | GGNCC | 5 cut(s) | 720, 782, 1619, 1676, 2041 |
| AsuC2I | CCSGG | 1 cut(s) | 719 |
| AsuHPI | GGTGA | 4 cut(s) | 449, 1753, 1884, 1980 |
| AvaII | GGWCC | 4 cut(s) | 782, 1619, 1676, 2041 |
| AvrII | CCTAGG | 1 cut(s) | 1364 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2433, 2466 |
| BamHI | GGATCC | 1 cut(s) | 401 |
| BanI | GGYRCC | 1 cut(s) | 1464 |
| Bbv12I | GWGCWC | 2 cut(s) | 1770, 2441 |
| BbvI | GCAGC | 6 cut(s) | 487, 617, 1934, 1957, 2498, 2501 |
| BccI | CCATC | 9 cut(s) | 215, 299, 977, 1096, 1371, 1520, 1867, 2120, 2487 |
| BceAI | ACGGC | 3 cut(s) | 286, 2432, 2460 |
| BciT130I | CCWGG | 8 cut(s) | 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| BciVI | GTATCC | 1 cut(s) | 766 |
| BcnI | CCSGG | 1 cut(s) | 719 |
| BcoDI | GTCTC | 2 cut(s) | 626, 2525 |
| BcuI | ACTAGT | 3 cut(s) | 1171, 1399, 2404 |
| BfmI | CTRYAG | 5 cut(s) | 181, 694, 934, 1971, 2092 |
| BfuAI | ACCTGC | 2 cut(s) | 381, 1291 |
| BfuI | GTATCC | 1 cut(s) | 766 |
| BisI | GCNGC | 6 cut(s) | 501, 606, 1923, 1971, 2487, 2490 |
| BlnI | CCTAGG | 1 cut(s) | 1364 |
| BlsI | GCNGC | 6 cut(s) | 502, 607, 1924, 1972, 2488, 2491 |
| Bme1390I | CCNGG | 9 cut(s) | 719, 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| Bme18I | GGWCC | 4 cut(s) | 782, 1619, 1676, 2041 |
| BmgBI | CACGTC | 1 cut(s) | 1255 |
| BmgT120I | GGNCC | 5 cut(s) | 720, 782, 1619, 1676, 2041 |
| BmiI | GGNNCC | 3 cut(s) | 403, 469, 1466 |
| BmrFI | CCNGG | 9 cut(s) | 719, 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| BmsI | GCATC | 5 cut(s) | 68, 849, 1020, 1213, 1248 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1561 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2522, 2554 |
| BpmI | CTGGAG | 2 cut(s) | 198, 2586 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2103 |
| BpuEI | CTTGAG | 2 cut(s) | 1124, 2524 |
| BpuMI | CCSGG | 1 cut(s) | 719 |
| Bsa29I | ATCGAT | 1 cut(s) | 1280 |
| BsaAI | YACGTR | 1 cut(s) | 74 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2114 |
| BsaHI | GRCGYC | 1 cut(s) | 1558 |
| BsaWI | WCCGGW | 1 cut(s) | 1570 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 669, 699, 972, 1002, 1193, 1223 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 87, 142, 221, 562, 1370, 1526 |
| Bse1I | ACTGG | 5 cut(s) | 215, 919, 1276, 1949, 2576 |
| Bse3DI | GCAATG | 3 cut(s) | 198, 231, 1725 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2114 |
| BseBI | CCWGG | 8 cut(s) | 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| BseCI | ATCGAT | 1 cut(s) | 1280 |
| BseGI | GGATG | 8 cut(s) | 379, 757, 864, 1088, 1878, 1882, 2131, 2331 |
| BseJI | GATNNNNATC | 1 cut(s) | 2114 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 87, 142, 221, 562, 1370, 1526 |
| BseMI | GCAATG | 3 cut(s) | 198, 231, 1725 |
| BseMII | CTCAG | 5 cut(s) | 1031, 1220, 1656, 1997, 2094 |
| BseNI | ACTGG | 5 cut(s) | 215, 919, 1276, 1949, 2576 |
| BseRI | GAGGAG | 3 cut(s) | 673, 693, 1246 |
| BseX3I | CGGCCG | 1 cut(s) | 2445 |
| BseXI | GCAGC | 6 cut(s) | 487, 617, 1934, 1957, 2498, 2501 |
| BseYI | CCCAGC | 2 cut(s) | 1425, 2321 |
| BsgI | GTGCAG | 2 cut(s) | 506, 2600 |
| Bsh1236I | CGCG | 2 cut(s) | 411, 1041 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2220, 2448 |
| BshFI | GGCC | 7 cut(s) | 722, 735, 1948, 2023, 2189, 2344, 2447 |
| BshNI | GGYRCC | 1 cut(s) | 1464 |
| BshVI | ATCGAT | 1 cut(s) | 1280 |
| BsiEI | CGRYCG | 2 cut(s) | 2220, 2448 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1770, 2441 |
| BsiSI | CCGG | 2 cut(s) | 718, 1571 |
| BslFI | GGGAC | 2 cut(s) | 1837, 2272 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 87, 142, 221, 562, 1370, 1526 |
| BsmAI | GTCTC | 2 cut(s) | 626, 2525 |
| BsmFI | GGGAC | 2 cut(s) | 1837, 2272 |
| BsmI | GAATGC | 4 cut(s) | 535, 607, 1641, 1822 |
| BsnI | GGCC | 7 cut(s) | 722, 735, 1948, 2023, 2189, 2344, 2447 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1770, 2441 |
| Bsp19I | CCATGG | 1 cut(s) | 1679 |
| BspACI | CCGC | 1 cut(s) | 411 |
| BspANI | GGCC | 7 cut(s) | 722, 735, 1948, 2023, 2189, 2344, 2447 |
| BspCNI | CTCAG | 5 cut(s) | 1030, 1221, 1657, 1996, 2095 |
| BspDI | ATCGAT | 1 cut(s) | 1280 |
| BspFNI | CGCG | 2 cut(s) | 411, 1041 |
| BspHI | TCATGA | 1 cut(s) | 360 |
| BspLI | GGNNCC | 3 cut(s) | 403, 469, 1466 |
| BspMAI | CTGCAG | 2 cut(s) | 938, 1975 |
| BspMI | ACCTGC | 2 cut(s) | 381, 1291 |
| BspPI | GGATC | 6 cut(s) | 109, 396, 409, 1400, 2181, 2279 |
| BspQI | GCTCTTC | 1 cut(s) | 308 |
| BspT107I | GGYRCC | 1 cut(s) | 1464 |
| BsrDI | GCAATG | 3 cut(s) | 198, 231, 1725 |
| BsrI | ACTGG | 5 cut(s) | 215, 919, 1276, 1949, 2576 |
| BssNI | GRCGYC | 1 cut(s) | 1558 |
| BssT1I | CCWWGG | 7 cut(s) | 727, 1364, 1679, 1839, 1949, 2044, 2545 |
| Bst2UI | CCWGG | 8 cut(s) | 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| Bst4CI | ACNGT | 6 cut(s) | 328, 1000, 1629, 1816, 2145, 2560 |
| Bst6I | CTCTTC | 5 cut(s) | 80, 308, 420, 440, 1533 |
| BstACI | GRCGYC | 1 cut(s) | 1558 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 237 |
| BstBAI | YACGTR | 1 cut(s) | 74 |
| BstC8I | GCNNGC | 5 cut(s) | 238, 282, 519, 1450, 2191 |
| BstDEI | CTNAG | 8 cut(s) | 593, 846, 852, 1017, 1229, 1665, 1983, 2103 |
| BstDSI | CCRYGG | 1 cut(s) | 1679 |
| BstF5I | GGATG | 8 cut(s) | 379, 757, 864, 1088, 1878, 1882, 2131, 2331 |
| BstFNI | CGCG | 2 cut(s) | 411, 1041 |
| BstHHI | GCGC | 2 cut(s) | 1732, 2464 |
| BstMAI | GTCTC | 2 cut(s) | 626, 2525 |
| BstMCI | CGRYCG | 2 cut(s) | 2220, 2448 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 237, 1201, 2483 |
| BstNI | CCWGG | 8 cut(s) | 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| BstNSI | RCATGY | 2 cut(s) | 240, 382 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1561 |
| BstSCI | CCNGG | 9 cut(s) | 717, 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| BstSFI | CTRYAG | 5 cut(s) | 181, 694, 934, 1971, 2092 |
| BstUI | CGCG | 2 cut(s) | 411, 1041 |
| BstV1I | GCAGC | 6 cut(s) | 487, 617, 1934, 1957, 2498, 2501 |
| BstX2I | RGATCY | 3 cut(s) | 101, 401, 1405 |
| BstYI | RGATCY | 3 cut(s) | 101, 401, 1405 |
| BstZI | CGGCCG | 1 cut(s) | 2445 |
| Bsu15I | ATCGAT | 1 cut(s) | 1280 |
| BsuI | GTATCC | 1 cut(s) | 766 |
| BsuRI | GGCC | 7 cut(s) | 722, 735, 1948, 2023, 2189, 2344, 2447 |
| BsuTUI | ATCGAT | 1 cut(s) | 1280 |
| BtgI | CCRYGG | 1 cut(s) | 1679 |
| BtrI | CACGTC | 1 cut(s) | 1255 |
| BtsCI | GGATG | 8 cut(s) | 379, 757, 864, 1088, 1878, 1882, 2131, 2331 |
| BtsI | GCAGTG | 2 cut(s) | 1727, 1932 |
| BtsIMutI | CAGTG | 7 cut(s) | 912, 1005, 1226, 1727, 1932, 1942, 2583 |
| BveI | ACCTGC | 2 cut(s) | 381, 1291 |
| Cac8I | GCNNGC | 5 cut(s) | 238, 282, 519, 1450, 2191 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2534 |
| CciI | TCATGA | 1 cut(s) | 360 |
| CfoI | GCGC | 2 cut(s) | 1732, 2464 |
| Cfr13I | GGNCC | 5 cut(s) | 720, 782, 1619, 1676, 2041 |
| ClaI | ATCGAT | 1 cut(s) | 1280 |
| CseI | GACGC | 1 cut(s) | 417 |
| CsiI | ACCWGGT | 2 cut(s) | 778, 1467 |
| Csp6I | GTAC | 4 cut(s) | 904, 1287, 1465, 1980 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1614, 1649, 2212, 2247 |
| CviQI | GTAC | 4 cut(s) | 904, 1287, 1465, 1980 |
| DdeI | CTNAG | 8 cut(s) | 593, 846, 852, 1017, 1229, 1665, 1983, 2103 |
| DraIII | CACNNNGTG | 1 cut(s) | 1002 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2276 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2276 |
| EaeI | YGGCCR | 1 cut(s) | 2445 |
| EagI | CGGCCG | 1 cut(s) | 2445 |
| Eam1104I | CTCTTC | 5 cut(s) | 80, 308, 420, 440, 1533 |
| EarI | CTCTTC | 5 cut(s) | 80, 308, 420, 440, 1533 |
| EclXI | CGGCCG | 1 cut(s) | 2445 |
| Eco130I | CCWWGG | 7 cut(s) | 727, 1364, 1679, 1839, 1949, 2044, 2545 |
| Eco147I | AGGCCT | 2 cut(s) | 2023, 2189 |
| Eco47I | GGWCC | 4 cut(s) | 782, 1619, 1676, 2041 |
| Eco52I | CGGCCG | 1 cut(s) | 2445 |
| Eco57I | CTGAAG | 2 cut(s) | 893, 2104 |
| EcoRI | GAATTC | 1 cut(s) | 1660 |
| EcoRII | CCWGG | 8 cut(s) | 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| EcoT14I | CCWWGG | 7 cut(s) | 727, 1364, 1679, 1839, 1949, 2044, 2545 |
| EcoT22I | ATGCAT | 1 cut(s) | 1064 |
| ErhI | CCWWGG | 7 cut(s) | 727, 1364, 1679, 1839, 1949, 2044, 2545 |
| FaqI | GGGAC | 2 cut(s) | 1837, 2272 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 6 cut(s) | 501, 606, 1923, 1971, 2487, 2490 |
| FokI | GGATG | 8 cut(s) | 386, 764, 871, 1075, 1885, 1889, 2138, 2338 |
| Fsp4HI | GCNGC | 6 cut(s) | 501, 606, 1923, 1971, 2487, 2490 |
| GlaI | GCGC | 2 cut(s) | 1731, 2463 |
| GluI | GCNGC | 6 cut(s) | 501, 606, 1923, 1971, 2487, 2490 |
| GsaI | CCCAGC | 2 cut(s) | 1429, 2325 |
| GsuI | CTGGAG | 2 cut(s) | 198, 2586 |
| HaeIII | GGCC | 7 cut(s) | 722, 735, 1948, 2023, 2189, 2344, 2447 |
| HapII | CCGG | 2 cut(s) | 718, 1571 |
| HgaI | GACGC | 1 cut(s) | 417 |
| HhaI | GCGC | 2 cut(s) | 1732, 2464 |
| Hin1I | GRCGYC | 1 cut(s) | 1558 |
| Hin6I | GCGC | 2 cut(s) | 1730, 2462 |
| HinP1I | GCGC | 2 cut(s) | 1730, 2462 |
| HincII | GTYRAC | 6 cut(s) | 6, 335, 1212, 1474, 2269, 2614 |
| HindII | GTYRAC | 6 cut(s) | 6, 335, 1212, 1474, 2269, 2614 |
| HindIII | AAGCTT | 1 cut(s) | 712 |
| HinfI | GANTC | 7 cut(s) | 118, 548, 769, 1043, 2138, 2161, 2500 |
| HpaII | CCGG | 2 cut(s) | 718, 1571 |
| HphI | GGTGA | 4 cut(s) | 449, 1753, 1884, 1980 |
| Hpy166II | GTNNAC | 9 cut(s) | 6, 154, 324, 335, 1212, 1474, 1744, 2269, 2614 |
| Hpy8I | GTNNAC | 9 cut(s) | 6, 154, 324, 335, 1212, 1474, 1744, 2269, 2614 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 2446 |
| HpyAV | CCTTC | 7 cut(s) | 4, 892, 958, 1301, 1732, 1839, 1923 |
| HpyCH4III | ACNGT | 6 cut(s) | 328, 1000, 1629, 1816, 2145, 2560 |
| HpyCH4IV | ACGT | 4 cut(s) | 73, 1254, 1558, 1764 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 237, 1201, 2483 |
| HpyF3I | CTNAG | 8 cut(s) | 593, 846, 852, 1017, 1229, 1665, 1983, 2103 |
| HpySE526I | ACGT | 4 cut(s) | 73, 1254, 1558, 1764 |
| Hsp92I | GRCGYC | 1 cut(s) | 1558 |
| HspAI | GCGC | 2 cut(s) | 1730, 2462 |
| KpnI | GGTACC | 1 cut(s) | 1468 |
| LguI | GCTCTTC | 1 cut(s) | 308 |
| LmnI | GCTCC | 7 cut(s) | 277, 660, 1201, 1573, 1773, 1819, 2436 |
| Lsp1109I | GCAGC | 6 cut(s) | 487, 617, 1934, 1957, 2498, 2501 |
| LweI | GCATC | 5 cut(s) | 68, 849, 1020, 1213, 1248 |
| MabI | ACCWGGT | 2 cut(s) | 778, 1467 |
| MaeII | ACGT | 4 cut(s) | 73, 1254, 1558, 1764 |
| MaeIII | GTNAC | 9 cut(s) | 413, 880, 1035, 1112, 1454, 1881, 1961, 1986, 2554 |
| MfeI | CAATTG | 1 cut(s) | 522 |
| MflI | RGATCY | 3 cut(s) | 101, 401, 1405 |
| MhlI | GDGCHC | 2 cut(s) | 1770, 2441 |
| MlyI | GAGTC | 2 cut(s) | 542, 2509 |
| MmeI | TCCRAC | 1 cut(s) | 1051 |
| Mph1103I | ATGCAT | 1 cut(s) | 1064 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2406 |
| MseI | TTAA | 7 cut(s) | 17, 51, 258, 864, 1602, 1779, 2184 |
| MslI | CAYNNNNRTG | 4 cut(s) | 764, 1763, 2355, 2604 |
| MspI | CCGG | 2 cut(s) | 718, 1571 |
| MspR9I | CCNGG | 9 cut(s) | 719, 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| MunI | CAATTG | 1 cut(s) | 522 |
| Mva1269I | GAATGC | 4 cut(s) | 535, 607, 1641, 1822 |
| MvaI | CCWGG | 8 cut(s) | 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| MvnI | CGCG | 2 cut(s) | 411, 1041 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 237, 1201, 2483 |
| NciI | CCSGG | 1 cut(s) | 719 |
| NcoI | CCATGG | 1 cut(s) | 1679 |
| NlaIV | GGNNCC | 3 cut(s) | 403, 469, 1466 |
| NmeAIII | GCCGAG | 1 cut(s) | 681 |
| NmuCI | GTSAC | 4 cut(s) | 1112, 1454, 1881, 1986 |
| NsiI | ATGCAT | 1 cut(s) | 1064 |
| NspI | RCATGY | 2 cut(s) | 240, 382 |
| OliI | CACNNNNGTG | 1 cut(s) | 1763 |
| PaeI | GCATGC | 1 cut(s) | 240 |
| PagI | TCATGA | 1 cut(s) | 360 |
| PceI | AGGCCT | 2 cut(s) | 2023, 2189 |
| PciI | ACATGT | 1 cut(s) | 378 |
| PciSI | GCTCTTC | 1 cut(s) | 308 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 11 |
| PctI | GAATGC | 4 cut(s) | 535, 607, 1641, 1822 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2406 |
| PfeI | GAWTC | 5 cut(s) | 118, 769, 1043, 2138, 2161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 221 |
| PfoI | TCCNGGA | 2 cut(s) | 1615, 2563 |
| PkrI | GCNGC | 6 cut(s) | 502, 607, 1924, 1972, 2488, 2491 |
| Ple19I | CGATCG | 1 cut(s) | 2220 |
| PleI | GAGTC | 2 cut(s) | 542, 2508 |
| PpsI | GAGTC | 2 cut(s) | 542, 2508 |
| Ppu21I | YACGTR | 1 cut(s) | 74 |
| PscI | ACATGT | 1 cut(s) | 378 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1561 |
| PshBI | ATTAAT | 1 cut(s) | 1779 |
| PsiI | TTATAA | 1 cut(s) | 2079 |
| Psp6I | CCWGG | 8 cut(s) | 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| PspFI | CCCAGC | 2 cut(s) | 1425, 2321 |
| PspGI | CCWGG | 8 cut(s) | 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| PspN4I | GGNNCC | 3 cut(s) | 403, 469, 1466 |
| PspPI | GGNCC | 5 cut(s) | 720, 782, 1619, 1676, 2041 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1736, 1768 |
| PstI | CTGCAG | 2 cut(s) | 938, 1975 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2534 |
| PsuI | RGATCY | 3 cut(s) | 101, 401, 1405 |
| PvuI | CGATCG | 1 cut(s) | 2220 |
| RsaI | GTAC | 4 cut(s) | 905, 1288, 1466, 1981 |
| RsaNI | GTAC | 4 cut(s) | 904, 1287, 1465, 1980 |
| RseI | CAYNNNNRTG | 4 cut(s) | 764, 1763, 2355, 2604 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SapI | GCTCTTC | 1 cut(s) | 308 |
| SaqAI | TTAA | 7 cut(s) | 17, 51, 258, 864, 1602, 1779, 2184 |
| SatI | GCNGC | 6 cut(s) | 501, 606, 1923, 1971, 2487, 2490 |
| Sau96I | GGNCC | 5 cut(s) | 720, 782, 1619, 1676, 2041 |
| SchI | GAGTC | 2 cut(s) | 542, 2509 |
| ScrFI | CCNGG | 9 cut(s) | 719, 780, 1199, 1469, 1617, 1896, 2256, 2565, 2593 |
| SduI | GDGCHC | 2 cut(s) | 1770, 2441 |
| SexAI | ACCWGGT | 2 cut(s) | 778, 1467 |
| SfaNI | GCATC | 5 cut(s) | 68, 849, 1020, 1213, 1248 |
| SfcI | CTRYAG | 5 cut(s) | 181, 694, 934, 1971, 2092 |
| SinI | GGWCC | 4 cut(s) | 782, 1619, 1676, 2041 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 764, 1763, 2355, 2604 |
| SmlI | CTYRAG | 2 cut(s) | 1103, 2539 |
| SmoI | CTYRAG | 2 cut(s) | 1103, 2539 |
| SpeI | ACTAGT | 3 cut(s) | 1171, 1399, 2404 |
| SphI | GCATGC | 1 cut(s) | 240 |
| SseBI | AGGCCT | 2 cut(s) | 2023, 2189 |
| SsiI | CCGC | 1 cut(s) | 411 |
| SspI | AATATT | 1 cut(s) | 1010 |
| StuI | AGGCCT | 2 cut(s) | 2023, 2189 |
| StyD4I | CCNGG | 9 cut(s) | 717, 778, 1197, 1467, 1615, 1894, 2254, 2563, 2591 |
| StyI | CCWWGG | 7 cut(s) | 727, 1364, 1679, 1839, 1949, 2044, 2545 |
| TaaI | ACNGT | 6 cut(s) | 328, 1000, 1629, 1816, 2145, 2560 |
| TaiI | ACGT | 4 cut(s) | 76, 1257, 1561, 1767 |
| TaqI | TCGA | 3 cut(s) | 5, 1280, 2216 |
| TatI | WGTACW | 1 cut(s) | 903 |
| TfiI | GAWTC | 5 cut(s) | 118, 769, 1043, 2138, 2161 |
| Tru1I | TTAA | 7 cut(s) | 17, 51, 258, 864, 1602, 1779, 2184 |
| Tru9I | TTAA | 7 cut(s) | 17, 51, 258, 864, 1602, 1779, 2184 |
| TscAI | CASTG | 7 cut(s) | 919, 1005, 1233, 1727, 1932, 1949, 2583 |
| TseFI | GTSAC | 4 cut(s) | 1112, 1454, 1881, 1986 |
| TseI | GCWGC | 6 cut(s) | 500, 605, 1922, 1970, 2486, 2489 |
| Tsp45I | GTSAC | 4 cut(s) | 1112, 1454, 1881, 1986 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| TspRI | CASTG | 7 cut(s) | 919, 1005, 1233, 1727, 1932, 1949, 2583 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 221 |
| VpaK11BI | GGWCC | 4 cut(s) | 782, 1619, 1676, 2041 |
| VspI | ATTAAT | 1 cut(s) | 1779 |
| XapI | RAATTY | 7 cut(s) | 293, 793, 1330, 1381, 1438, 1506, 1660 |
| XceI | RCATGY | 2 cut(s) | 240, 382 |
| XmaJI | CCTAGG | 1 cut(s) | 1364 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2406 |
| ZraI | GACGTC | 1 cut(s) | 1559 |
| Zsp2I | ATGCAT | 1 cut(s) | 1064 |