Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 70 - 190 | 4.3e-15 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 56 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AfaI | GTAC | 1 cut(s) | 720 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AflIII | ACRYGT | 1 cut(s) | 530 |
| AjiI | CACGTC | 1 cut(s) | 533 |
| AluBI | AGCT | 3 cut(s) | 515, 551, 683 |
| AluI | AGCT | 3 cut(s) | 515, 551, 683 |
| Alw26I | GTCTC | 2 cut(s) | 141, 175 |
| Ama87I | CYCGRG | 1 cut(s) | 294 |
| AoxI | GGCC | 1 cut(s) | 705 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| AseI | ATTAAT | 1 cut(s) | 207 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 548 |
| AsuII | TTCGAA | 1 cut(s) | 69 |
| AvaI | CYCGRG | 1 cut(s) | 294 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 437 |
| BccI | CCATC | 2 cut(s) | 209, 279 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BcoDI | GTCTC | 2 cut(s) | 141, 175 |
| BfaI | CTAG | 2 cut(s) | 102, 582 |
| BfmI | CTRYAG | 1 cut(s) | 142 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmeT110I | CYCGRG | 1 cut(s) | 294 |
| BmgBI | CACGTC | 1 cut(s) | 533 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 4 cut(s) | 107, 269, 457, 612 |
| BmsI | GCATC | 2 cut(s) | 88, 400 |
| BpiI | GAAGAC | 1 cut(s) | 437 |
| BpmI | CTGGAG | 1 cut(s) | 531 |
| Bpu14I | TTCGAA | 1 cut(s) | 69 |
| BsaI | GGTCTC | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 1 cut(s) | 191 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bse1I | ACTGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| BseDI | CCNNGG | 1 cut(s) | 191 |
| BseGI | GGATG | 3 cut(s) | 13, 103, 220 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseNI | ACTGG | 1 cut(s) | 514 |
| BshFI | GGCC | 1 cut(s) | 707 |
| BsiHKCI | CYCGRG | 1 cut(s) | 294 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BsmAI | GTCTC | 2 cut(s) | 141, 175 |
| BsmI | GAATGC | 1 cut(s) | 413 |
| BsnI | GGCC | 1 cut(s) | 707 |
| Bso31I | GGTCTC | 1 cut(s) | 175 |
| BsoBI | CYCGRG | 1 cut(s) | 294 |
| Bsp119I | TTCGAA | 1 cut(s) | 69 |
| Bsp143I | GATC | 1 cut(s) | 462 |
| BspACI | CCGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 707 |
| BspLI | GGNNCC | 4 cut(s) | 107, 269, 457, 612 |
| BspMAI | CTGCAG | 1 cut(s) | 146 |
| BspT104I | TTCGAA | 1 cut(s) | 69 |
| BspTNI | GGTCTC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BsrI | ACTGG | 1 cut(s) | 514 |
| BssECI | CCNNGG | 1 cut(s) | 191 |
| BssMI | GATC | 1 cut(s) | 462 |
| BssT1I | CCWWGG | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 2 cut(s) | 560, 596 |
| BstBI | TTCGAA | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 1 cut(s) | 568 |
| BstDEI | CTNAG | 1 cut(s) | 679 |
| BstF5I | GGATG | 3 cut(s) | 13, 103, 220 |
| BstKTI | GATC | 1 cut(s) | 465 |
| BstMAI | GTCTC | 2 cut(s) | 141, 175 |
| BstMBI | GATC | 1 cut(s) | 462 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 572 |
| BstSFI | CTRYAG | 1 cut(s) | 142 |
| BstV2I | GAAGAC | 1 cut(s) | 437 |
| BsuRI | GGCC | 1 cut(s) | 707 |
| BtgZI | GCGATG | 1 cut(s) | 306 |
| BtrI | CACGTC | 1 cut(s) | 533 |
| BtsCI | GGATG | 3 cut(s) | 13, 103, 220 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| Cac8I | GCNNGC | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| Csp6I | GTAC | 1 cut(s) | 719 |
| CviJI | RGCY | 7 cut(s) | 341, 431, 515, 551, 683, 701, 707 |
| CviKI_1 | RGCY | 7 cut(s) | 341, 431, 515, 551, 683, 701, 707 |
| CviQI | GTAC | 1 cut(s) | 719 |
| DdeI | CTNAG | 1 cut(s) | 679 |
| DpnI | GATC | 1 cut(s) | 464 |
| DpnII | GATC | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 1 cut(s) | 191 |
| Eco31I | GGTCTC | 1 cut(s) | 175 |
| Eco32I | GATATC | 1 cut(s) | 394 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| Eco88I | CYCGRG | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRV | GATATC | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 191 |
| EcoT22I | ATGCAT | 1 cut(s) | 415 |
| ErhI | CCWWGG | 1 cut(s) | 191 |
| FaiI | YATR | 6 cut(s) | 127, 152, 333, 425, 436, 573 |
| FokI | GGATG | 3 cut(s) | 20, 110, 227 |
| FspBI | CTAG | 2 cut(s) | 102, 582 |
| GsuI | CTGGAG | 1 cut(s) | 531 |
| HaeIII | GGCC | 1 cut(s) | 707 |
| HinfI | GANTC | 3 cut(s) | 230, 262, 482 |
| HphI | GGTGA | 2 cut(s) | 98, 548 |
| Hpy188I | TCNGA | 4 cut(s) | 174, 267, 378, 646 |
| Hpy188III | TCNNGA | 3 cut(s) | 121, 389, 418 |
| Hpy99I | CGWCG | 1 cut(s) | 537 |
| HpyAV | CCTTC | 2 cut(s) | 119, 220 |
| HpyCH4III | ACNGT | 2 cut(s) | 560, 596 |
| HpyCH4IV | ACGT | 1 cut(s) | 532 |
| HpyCH4V | TGCA | 4 cut(s) | 144, 347, 413, 438 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 572 |
| HpyF3I | CTNAG | 1 cut(s) | 679 |
| HpySE526I | ACGT | 1 cut(s) | 532 |
| Kzo9I | GATC | 1 cut(s) | 462 |
| LmnI | GCTCC | 2 cut(s) | 25, 512 |
| LpnPI | CCDG | 6 cut(s) | 79, 200, 236, 431, 495, 630 |
| LweI | GCATC | 2 cut(s) | 88, 400 |
| MaeI | CTAG | 2 cut(s) | 102, 582 |
| MaeII | ACGT | 1 cut(s) | 532 |
| MaeIII | GTNAC | 3 cut(s) | 61, 86, 467 |
| MalI | GATC | 1 cut(s) | 464 |
| MboI | GATC | 1 cut(s) | 462 |
| MboII | GAAGA | 2 cut(s) | 250, 437 |
| MluCI | AATT | 4 cut(s) | 81, 137, 204, 372 |
| MlyI | GAGTC | 2 cut(s) | 239, 476 |
| MnlI | CCTC | 5 cut(s) | 239, 336, 349, 372, 601 |
| Mph1103I | ATGCAT | 1 cut(s) | 415 |
| MseI | TTAA | 2 cut(s) | 200, 207 |
| Mva1269I | GAATGC | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 572 |
| NdeII | GATC | 1 cut(s) | 462 |
| NlaIV | GGNNCC | 4 cut(s) | 107, 269, 457, 612 |
| NmuCI | GTSAC | 2 cut(s) | 61, 86 |
| NsiI | ATGCAT | 1 cut(s) | 415 |
| NspV | TTCGAA | 1 cut(s) | 69 |
| PaeR7I | CTCGAG | 1 cut(s) | 294 |
| PctI | GAATGC | 1 cut(s) | 413 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| PleI | GAGTC | 2 cut(s) | 238, 476 |
| PpsI | GAGTC | 2 cut(s) | 238, 476 |
| PpuMI | RGGWCCY | 1 cut(s) | 106 |
| PshBI | ATTAAT | 1 cut(s) | 207 |
| Psp5II | RGGWCCY | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 4 cut(s) | 107, 269, 457, 612 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PspPPI | RGGWCCY | 1 cut(s) | 106 |
| PspXI | VCTCGAGB | 1 cut(s) | 294 |
| PstI | CTGCAG | 1 cut(s) | 146 |
| RsaI | GTAC | 1 cut(s) | 720 |
| RsaNI | GTAC | 1 cut(s) | 719 |
| SaqAI | TTAA | 2 cut(s) | 200, 207 |
| Sau3AI | GATC | 1 cut(s) | 462 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| SchI | GAGTC | 2 cut(s) | 239, 476 |
| SetI | ASST | 6 cut(s) | 250, 517, 535, 553, 619, 685 |
| SfaNI | GCATC | 2 cut(s) | 88, 400 |
| SfcI | CTRYAG | 1 cut(s) | 142 |
| Sfr274I | CTCGAG | 1 cut(s) | 294 |
| SfuI | TTCGAA | 1 cut(s) | 69 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SlaI | CTCGAG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 294 |
| SmoI | CTYRAG | 1 cut(s) | 294 |
| Sse9I | AATT | 4 cut(s) | 81, 137, 204, 372 |
| SsiI | CCGC | 1 cut(s) | 56 |
| SspMI | CTAG | 2 cut(s) | 102, 582 |
| StyI | CCWWGG | 1 cut(s) | 191 |
| TaaI | ACNGT | 2 cut(s) | 560, 596 |
| TaiI | ACGT | 1 cut(s) | 535 |
| TaqI | TCGA | 3 cut(s) | 69, 295, 336 |
| TaqII | GACCGA | 1 cut(s) | 266 |
| TasI | AATT | 4 cut(s) | 81, 137, 204, 372 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| Tru1I | TTAA | 2 cut(s) | 200, 207 |
| Tru9I | TTAA | 2 cut(s) | 200, 207 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseFI | GTSAC | 2 cut(s) | 61, 86 |
| Tsp45I | GTSAC | 2 cut(s) | 61, 86 |
| TspDTI | ATGAA | 1 cut(s) | 309 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| VspI | ATTAAT | 1 cut(s) | 207 |
| XapI | RAATTY | 1 cut(s) | 137 |
| XhoI | CTCGAG | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 102, 582 |
| Zsp2I | ATGCAT | 1 cut(s) | 415 |