Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 379 |
| AciI | CCGC | 4 cut(s) | 83, 532, 570, 589 |
| AfaI | GTAC | 3 cut(s) | 174, 307, 347 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 459, 491, 531 |
| AgsI | TTSAA | 3 cut(s) | 56, 165, 651 |
| AhlI | ACTAGT | 1 cut(s) | 227 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 3 cut(s) | 8, 153, 659 |
| AluI | AGCT | 3 cut(s) | 8, 153, 659 |
| Alw21I | GWGCWC | 1 cut(s) | 155 |
| Alw26I | GTCTC | 1 cut(s) | 543 |
| Ama87I | CYCGRG | 1 cut(s) | 315 |
| Aor13HI | TCCGGA | 1 cut(s) | 379 |
| AoxI | GGCC | 1 cut(s) | 493 |
| ApeKI | GCWGC | 1 cut(s) | 581 |
| AsuC2I | CCSGG | 2 cut(s) | 460, 473 |
| AsuHPI | GGTGA | 2 cut(s) | 332, 653 |
| AvaI | CYCGRG | 1 cut(s) | 315 |
| BanII | GRGCYC | 1 cut(s) | 155 |
| BbsI | GAAGAC | 1 cut(s) | 5 |
| Bbv12I | GWGCWC | 1 cut(s) | 155 |
| BbvI | GCAGC | 1 cut(s) | 593 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BcnI | CCSGG | 2 cut(s) | 460, 473 |
| BcoDI | GTCTC | 1 cut(s) | 543 |
| BcuI | ACTAGT | 1 cut(s) | 227 |
| BfaI | CTAG | 3 cut(s) | 168, 228, 257 |
| BisI | GCNGC | 2 cut(s) | 582, 590 |
| BlsI | GCNGC | 2 cut(s) | 583, 591 |
| Bme1390I | CCNGG | 3 cut(s) | 20, 460, 473 |
| BmeT110I | CYCGRG | 1 cut(s) | 315 |
| BmrFI | CCNGG | 3 cut(s) | 20, 460, 473 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BpiI | GAAGAC | 1 cut(s) | 5 |
| BpuMI | CCSGG | 2 cut(s) | 460, 473 |
| BsaWI | WCCGGW | 1 cut(s) | 379 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 459, 491, 531 |
| BseAI | TCCGGA | 1 cut(s) | 379 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 459, 491, 531 |
| BseMII | CTCAG | 1 cut(s) | 140 |
| BseRI | GAGGAG | 2 cut(s) | 275, 588 |
| BseXI | GCAGC | 1 cut(s) | 593 |
| BsgI | GTGCAG | 2 cut(s) | 490, 600 |
| Bsh1285I | CGRYCG | 3 cut(s) | 477, 536, 618 |
| BshFI | GGCC | 1 cut(s) | 495 |
| BsiEI | CGRYCG | 3 cut(s) | 477, 536, 618 |
| BsiHKAI | GWGCWC | 1 cut(s) | 155 |
| BsiHKCI | CYCGRG | 1 cut(s) | 315 |
| BsiSI | CCGG | 4 cut(s) | 380, 460, 473, 492 |
| BslFI | GGGAC | 1 cut(s) | 319 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 459, 491, 531 |
| BsmAI | GTCTC | 1 cut(s) | 543 |
| BsmBI | CGTCTC | 1 cut(s) | 543 |
| BsmFI | GGGAC | 1 cut(s) | 319 |
| BsnI | GGCC | 1 cut(s) | 495 |
| BsoBI | CYCGRG | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 1 cut(s) | 155 |
| Bsp13I | TCCGGA | 1 cut(s) | 379 |
| Bsp1407I | TGTACA | 1 cut(s) | 345 |
| Bsp143I | GATC | 3 cut(s) | 39, 615, 627 |
| BspACI | CCGC | 4 cut(s) | 83, 532, 570, 589 |
| BspANI | GGCC | 1 cut(s) | 495 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspEI | TCCGGA | 1 cut(s) | 379 |
| BsrGI | TGTACA | 1 cut(s) | 345 |
| BssMI | GATC | 3 cut(s) | 39, 615, 627 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 177 |
| Bst6I | CTCTTC | 1 cut(s) | 397 |
| BstAUI | TGTACA | 1 cut(s) | 345 |
| BstDEI | CTNAG | 1 cut(s) | 149 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstKTI | GATC | 3 cut(s) | 42, 618, 630 |
| BstMAI | GTCTC | 1 cut(s) | 543 |
| BstMBI | GATC | 3 cut(s) | 39, 615, 627 |
| BstMCI | CGRYCG | 3 cut(s) | 477, 536, 618 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstSCI | CCNGG | 3 cut(s) | 18, 458, 471 |
| BstV1I | GCAGC | 1 cut(s) | 593 |
| BstV2I | GAAGAC | 1 cut(s) | 5 |
| BsuRI | GGCC | 1 cut(s) | 495 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| Csp6I | GTAC | 3 cut(s) | 173, 306, 346 |
| CviAII | CATG | 3 cut(s) | 37, 269, 566 |
| CviQI | GTAC | 3 cut(s) | 173, 306, 346 |
| DdeI | CTNAG | 1 cut(s) | 149 |
| DpnI | GATC | 3 cut(s) | 41, 617, 629 |
| DpnII | GATC | 3 cut(s) | 39, 615, 627 |
| Eam1104I | CTCTTC | 1 cut(s) | 397 |
| EarI | CTCTTC | 1 cut(s) | 397 |
| EciI | GGCGGA | 1 cut(s) | 585 |
| Ecl136II | GAGCTC | 1 cut(s) | 153 |
| Eco24I | GRGCYC | 1 cut(s) | 155 |
| Eco53kI | GAGCTC | 1 cut(s) | 153 |
| Eco88I | CYCGRG | 1 cut(s) | 315 |
| EcoICRI | GAGCTC | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 155 |
| Esp3I | CGTCTC | 1 cut(s) | 543 |
| FaeI | CATG | 3 cut(s) | 40, 272, 569 |
| FaiI | YATR | 9 cut(s) | 38, 71, 98, 210, 270, 330, 332, 544, 567 |
| FaqI | GGGAC | 1 cut(s) | 319 |
| FatI | CATG | 3 cut(s) | 36, 268, 565 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 2 cut(s) | 582, 590 |
| FokI | GGATG | 1 cut(s) | 296 |
| FriOI | GRGCYC | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 2 cut(s) | 582, 590 |
| FspBI | CTAG | 3 cut(s) | 168, 228, 257 |
| GluI | GCNGC | 2 cut(s) | 582, 590 |
| HaeIII | GGCC | 1 cut(s) | 495 |
| HapII | CCGG | 4 cut(s) | 380, 460, 473, 492 |
| Hin1II | CATG | 3 cut(s) | 40, 272, 569 |
| HinfI | GANTC | 5 cut(s) | 299, 446, 516, 562, 605 |
| HpaII | CCGG | 4 cut(s) | 380, 460, 473, 492 |
| HphI | GGTGA | 2 cut(s) | 332, 653 |
| Hpy188I | TCNGA | 7 cut(s) | 112, 150, 469, 479, 610, 627, 634 |
| Hpy188III | TCNNGA | 4 cut(s) | 188, 281, 296, 380 |
| Hpy99I | CGWCG | 1 cut(s) | 562 |
| HpyAV | CCTTC | 2 cut(s) | 317, 432 |
| HpyCH4III | ACNGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 5 cut(s) | 138, 206, 287, 507, 581 |
| HpyF3I | CTNAG | 1 cut(s) | 149 |
| Hsp92II | CATG | 3 cut(s) | 40, 272, 569 |
| Kpn2I | TCCGGA | 1 cut(s) | 379 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| Kzo9I | GATC | 3 cut(s) | 39, 615, 627 |
| LpnPI | CCDG | 9 cut(s) | 5, 32, 266, 281, 393, 417, 473, 486, 505 |
| Lsp1109I | GCAGC | 1 cut(s) | 593 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 3 cut(s) | 168, 228, 257 |
| MaeIII | GTNAC | 1 cut(s) | 76 |
| MalI | GATC | 3 cut(s) | 41, 617, 629 |
| MboI | GATC | 3 cut(s) | 39, 615, 627 |
| MboII | GAAGA | 2 cut(s) | 5, 384 |
| MhlI | GDGCHC | 1 cut(s) | 155 |
| MluCI | AATT | 1 cut(s) | 61 |
| MlyI | GAGTC | 1 cut(s) | 440 |
| MmeI | TCCRAC | 2 cut(s) | 457, 492 |
| MroI | TCCGGA | 1 cut(s) | 379 |
| MseI | TTAA | 2 cut(s) | 87, 498 |
| MspI | CCGG | 4 cut(s) | 380, 460, 473, 492 |
| MspR9I | CCNGG | 3 cut(s) | 20, 460, 473 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| NciI | CCSGG | 2 cut(s) | 460, 473 |
| NdeII | GATC | 3 cut(s) | 39, 615, 627 |
| NlaIII | CATG | 3 cut(s) | 40, 272, 569 |
| PaeR7I | CTCGAG | 1 cut(s) | 315 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 446 |
| PfeI | GAWTC | 4 cut(s) | 299, 516, 562, 605 |
| PflFI | GACNNNGTC | 1 cut(s) | 473 |
| PkrI | GCNGC | 2 cut(s) | 583, 591 |
| Ple19I | CGATCG | 1 cut(s) | 618 |
| PleI | GAGTC | 1 cut(s) | 440 |
| PpsI | GAGTC | 1 cut(s) | 440 |
| Psp124BI | GAGCTC | 1 cut(s) | 155 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspXI | VCTCGAGB | 1 cut(s) | 315 |
| PsyI | GACNNNGTC | 1 cut(s) | 473 |
| PvuI | CGATCG | 1 cut(s) | 618 |
| RsaI | GTAC | 3 cut(s) | 174, 307, 347 |
| RsaNI | GTAC | 3 cut(s) | 173, 306, 346 |
| SacI | GAGCTC | 1 cut(s) | 155 |
| SaqAI | TTAA | 2 cut(s) | 87, 498 |
| SatI | GCNGC | 2 cut(s) | 582, 590 |
| Sau3AI | GATC | 3 cut(s) | 39, 615, 627 |
| SchI | GAGTC | 1 cut(s) | 440 |
| ScrFI | CCNGG | 3 cut(s) | 20, 460, 473 |
| SduI | GDGCHC | 1 cut(s) | 155 |
| SetI | ASST | 7 cut(s) | 10, 155, 322, 328, 424, 580, 661 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| Sfr274I | CTCGAG | 1 cut(s) | 315 |
| SlaI | CTCGAG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 315 |
| SmoI | CTYRAG | 1 cut(s) | 315 |
| SpeI | ACTAGT | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 61 |
| SsiI | CCGC | 4 cut(s) | 83, 532, 570, 589 |
| SspI | AATATT | 1 cut(s) | 46 |
| SspMI | CTAG | 3 cut(s) | 168, 228, 257 |
| SstI | GAGCTC | 1 cut(s) | 155 |
| StyD4I | CCNGG | 3 cut(s) | 18, 458, 471 |
| TaaI | ACNGT | 1 cut(s) | 177 |
| TaqI | TCGA | 3 cut(s) | 316, 440, 449 |
| TasI | AATT | 1 cut(s) | 61 |
| TatI | WGTACW | 3 cut(s) | 172, 305, 345 |
| TauI | GCSGC | 1 cut(s) | 592 |
| TfiI | GAWTC | 4 cut(s) | 299, 516, 562, 605 |
| Tru1I | TTAA | 2 cut(s) | 87, 498 |
| Tru9I | TTAA | 2 cut(s) | 87, 498 |
| TseI | GCWGC | 1 cut(s) | 581 |
| TspDTI | ATGAA | 3 cut(s) | 17, 348, 554 |
| Tth111I | GACNNNGTC | 1 cut(s) | 473 |
| XhoI | CTCGAG | 1 cut(s) | 315 |
| XspI | CTAG | 3 cut(s) | 168, 228, 257 |