Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 865 |
| AccB1I | GGYRCC | 1 cut(s) | 928 |
| AccBSI | CCGCTC | 1 cut(s) | 412 |
| AciI | CCGC | 5 cut(s) | 190, 299, 412, 654, 826 |
| AclWI | GGATC | 2 cut(s) | 28, 119 |
| AcsI | RAATTY | 3 cut(s) | 535, 733, 960 |
| AcuI | CTGAAG | 1 cut(s) | 878 |
| AcvI | CACGTG | 1 cut(s) | 845 |
| AfaI | GTAC | 3 cut(s) | 589, 865, 973 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 15, 16, 708, 786, 822, 956 |
| AgsI | TTSAA | 1 cut(s) | 398 |
| AjnI | CCWGG | 2 cut(s) | 117, 1022 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 595, 627 |
| AluBI | AGCT | 5 cut(s) | 142, 258, 461, 692, 761 |
| AluI | AGCT | 5 cut(s) | 142, 258, 461, 692, 761 |
| Alw21I | GWGCWC | 1 cut(s) | 571 |
| AlwI | GGATC | 2 cut(s) | 28, 119 |
| Ama87I | CYCGRG | 1 cut(s) | 14 |
| AoxI | GGCC | 1 cut(s) | 1020 |
| ApeKI | GCWGC | 2 cut(s) | 308, 794 |
| ApoI | RAATTY | 3 cut(s) | 535, 733, 960 |
| AseI | ATTAAT | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 794 |
| AvaI | CYCGRG | 1 cut(s) | 14 |
| BanI | GGYRCC | 1 cut(s) | 928 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 432, 464 |
| BbrPI | CACGTG | 1 cut(s) | 845 |
| Bbv12I | GWGCWC | 1 cut(s) | 571 |
| BbvI | GCAGC | 2 cut(s) | 295, 781 |
| BccI | CCATC | 2 cut(s) | 322, 878 |
| BciT130I | CCWGG | 2 cut(s) | 119, 1024 |
| BciVI | GTATCC | 1 cut(s) | 912 |
| BfaI | CTAG | 5 cut(s) | 416, 689, 762, 867, 975 |
| BfuAI | ACCTGC | 1 cut(s) | 865 |
| BfuI | GTATCC | 1 cut(s) | 912 |
| BisI | GCNGC | 3 cut(s) | 309, 413, 795 |
| BlsI | GCNGC | 3 cut(s) | 310, 414, 796 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 1024 |
| BmeT110I | CYCGRG | 1 cut(s) | 14 |
| BmiI | GGNNCC | 1 cut(s) | 930 |
| BmrFI | CCNGG | 2 cut(s) | 119, 1024 |
| BmrI | ACTGGG | 1 cut(s) | 326 |
| BmsI | GCATC | 2 cut(s) | 1039, 1042 |
| BmuI | ACTGGG | 1 cut(s) | 326 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 23, 55, 61, 93 |
| BpmI | CTGGAG | 1 cut(s) | 158 |
| BsaAI | YACGTR | 1 cut(s) | 845 |
| BsaJI | CCNNGG | 3 cut(s) | 60, 914, 1023 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 15, 16, 708, 786, 822, 956 |
| Bse1I | ACTGG | 3 cut(s) | 321, 1009, 1050 |
| Bse3DI | GCAATG | 2 cut(s) | 519, 741 |
| BseBI | CCWGG | 2 cut(s) | 119, 1024 |
| BseDI | CCNNGG | 3 cut(s) | 60, 914, 1023 |
| BseGI | GGATG | 2 cut(s) | 5, 1057 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 15, 16, 708, 786, 822, 956 |
| BseMI | GCAATG | 2 cut(s) | 519, 741 |
| BseMII | CTCAG | 3 cut(s) | 92, 106, 273 |
| BseNI | ACTGG | 3 cut(s) | 321, 1009, 1050 |
| BseRI | GAGGAG | 1 cut(s) | 789 |
| BseXI | GCAGC | 2 cut(s) | 295, 781 |
| BseYI | CCCAGC | 1 cut(s) | 461 |
| BshFI | GGCC | 1 cut(s) | 1022 |
| BshNI | GGYRCC | 1 cut(s) | 928 |
| BsiHKAI | GWGCWC | 1 cut(s) | 571 |
| BsiHKCI | CYCGRG | 1 cut(s) | 14 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BslFI | GGGAC | 2 cut(s) | 32, 683 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 15, 16, 708, 786, 822, 956 |
| BsmFI | GGGAC | 2 cut(s) | 32, 683 |
| BsmI | GAATGC | 1 cut(s) | 676 |
| BsnI | GGCC | 1 cut(s) | 1022 |
| BsoBI | CYCGRG | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 1 cut(s) | 571 |
| Bsp143I | GATC | 3 cut(s) | 33, 111, 550 |
| BspACI | CCGC | 5 cut(s) | 190, 299, 412, 654, 826 |
| BspANI | GGCC | 1 cut(s) | 1022 |
| BspCNI | CTCAG | 3 cut(s) | 91, 105, 272 |
| BspLI | GGNNCC | 1 cut(s) | 930 |
| BspMI | ACCTGC | 1 cut(s) | 865 |
| BspPI | GGATC | 2 cut(s) | 28, 119 |
| BspT107I | GGYRCC | 1 cut(s) | 928 |
| BsrBI | CCGCTC | 1 cut(s) | 412 |
| BsrDI | GCAATG | 2 cut(s) | 519, 741 |
| BsrI | ACTGG | 3 cut(s) | 321, 1009, 1050 |
| BssECI | CCNNGG | 3 cut(s) | 60, 914, 1023 |
| BssMI | GATC | 3 cut(s) | 33, 111, 550 |
| BssT1I | CCWWGG | 2 cut(s) | 60, 914 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 1024 |
| Bst4CI | ACNGT | 1 cut(s) | 495 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstBAI | YACGTR | 1 cut(s) | 845 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstDEI | CTNAG | 4 cut(s) | 78, 92, 259, 452 |
| BstF5I | GGATG | 2 cut(s) | 5, 1057 |
| BstKTI | GATC | 3 cut(s) | 36, 114, 553 |
| BstMBI | GATC | 3 cut(s) | 33, 111, 550 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 305, 386, 698 |
| BstNI | CCWGG | 2 cut(s) | 119, 1024 |
| BstSCI | CCNGG | 2 cut(s) | 117, 1022 |
| BstV1I | GCAGC | 2 cut(s) | 295, 781 |
| BstX2I | RGATCY | 2 cut(s) | 33, 111 |
| BstYI | RGATCY | 2 cut(s) | 33, 111 |
| BsuI | GTATCC | 1 cut(s) | 912 |
| BsuRI | GGCC | 1 cut(s) | 1022 |
| BtsCI | GGATG | 2 cut(s) | 5, 1057 |
| BtsIMutI | CAGTG | 3 cut(s) | 267, 991, 1043 |
| BveI | ACCTGC | 1 cut(s) | 865 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| Csp6I | GTAC | 3 cut(s) | 588, 864, 972 |
| CviAII | CATG | 2 cut(s) | 421, 956 |
| CviQI | GTAC | 3 cut(s) | 588, 864, 972 |
| DdeI | CTNAG | 4 cut(s) | 78, 92, 259, 452 |
| DpnI | GATC | 3 cut(s) | 35, 113, 552 |
| DpnII | GATC | 3 cut(s) | 33, 111, 550 |
| EciI | GGCGGA | 1 cut(s) | 841 |
| Eco130I | CCWWGG | 2 cut(s) | 60, 914 |
| Eco57I | CTGAAG | 1 cut(s) | 878 |
| Eco72I | CACGTG | 1 cut(s) | 845 |
| Eco88I | CYCGRG | 1 cut(s) | 14 |
| EcoRII | CCWGG | 2 cut(s) | 117, 1022 |
| EcoT14I | CCWWGG | 2 cut(s) | 60, 914 |
| ErhI | CCWWGG | 2 cut(s) | 60, 914 |
| FaeI | CATG | 2 cut(s) | 424, 959 |
| FaqI | GGGAC | 2 cut(s) | 32, 683 |
| FatI | CATG | 2 cut(s) | 420, 955 |
| FauI | CCCGC | 1 cut(s) | 647 |
| FauNDI | CATATG | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 3 cut(s) | 309, 413, 795 |
| Fsp4HI | GCNGC | 3 cut(s) | 309, 413, 795 |
| FspBI | CTAG | 5 cut(s) | 416, 689, 762, 867, 975 |
| GluI | GCNGC | 3 cut(s) | 309, 413, 795 |
| GsaI | CCCAGC | 1 cut(s) | 465 |
| GsuI | CTGGAG | 1 cut(s) | 158 |
| HaeIII | GGCC | 1 cut(s) | 1022 |
| HapII | CCGG | 1 cut(s) | 24 |
| Hin1II | CATG | 2 cut(s) | 424, 959 |
| HincII | GTYRAC | 1 cut(s) | 244 |
| HindII | GTYRAC | 1 cut(s) | 244 |
| HinfI | GANTC | 3 cut(s) | 20, 74, 335 |
| HpaI | GTTAAC | 1 cut(s) | 244 |
| HpaII | CCGG | 1 cut(s) | 24 |
| HphI | GGTGA | 1 cut(s) | 794 |
| Hpy166II | GTNNAC | 2 cut(s) | 244, 590 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 290, 774, 858 |
| Hpy188III | TCNNGA | 1 cut(s) | 137 |
| Hpy8I | GTNNAC | 2 cut(s) | 244, 590 |
| HpyAV | CCTTC | 9 cut(s) | 20, 434, 460, 644, 822, 853, 919, 942, 946 |
| HpyCH4III | ACNGT | 1 cut(s) | 495 |
| HpyCH4IV | ACGT | 2 cut(s) | 506, 844 |
| HpyCH4V | TGCA | 8 cut(s) | 100, 169, 380, 389, 512, 676, 746, 1030 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 305, 386, 698 |
| HpyF3I | CTNAG | 4 cut(s) | 78, 92, 259, 452 |
| HpySE526I | ACGT | 2 cut(s) | 506, 844 |
| Hsp92II | CATG | 2 cut(s) | 424, 959 |
| KspAI | GTTAAC | 1 cut(s) | 244 |
| Kzo9I | GATC | 3 cut(s) | 33, 111, 550 |
| LmnI | GCTCC | 3 cut(s) | 139, 458, 802 |
| Lsp1109I | GCAGC | 2 cut(s) | 295, 781 |
| LweI | GCATC | 2 cut(s) | 1039, 1042 |
| MaeI | CTAG | 5 cut(s) | 416, 689, 762, 867, 975 |
| MaeII | ACGT | 2 cut(s) | 506, 844 |
| MaeIII | GTNAC | 5 cut(s) | 182, 262, 426, 447, 726 |
| MalI | GATC | 3 cut(s) | 35, 113, 552 |
| MbiI | CCGCTC | 1 cut(s) | 412 |
| MboI | GATC | 3 cut(s) | 33, 111, 550 |
| MboII | GAAGA | 1 cut(s) | 106 |
| MfeI | CAATTG | 1 cut(s) | 1034 |
| MflI | RGATCY | 2 cut(s) | 33, 111 |
| MhlI | GDGCHC | 1 cut(s) | 571 |
| MluCI | AATT | 7 cut(s) | 433, 535, 560, 733, 749, 960, 1034 |
| MlyI | GAGTC | 2 cut(s) | 14, 344 |
| MmeI | TCCRAC | 1 cut(s) | 859 |
| MseI | TTAA | 5 cut(s) | 152, 233, 243, 684, 1057 |
| MspI | CCGG | 1 cut(s) | 24 |
| MspR9I | CCNGG | 2 cut(s) | 119, 1024 |
| MunI | CAATTG | 1 cut(s) | 1034 |
| Mva1269I | GAATGC | 1 cut(s) | 676 |
| MvaI | CCWGG | 2 cut(s) | 119, 1024 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 305, 386, 698 |
| NdeI | CATATG | 1 cut(s) | 367 |
| NdeII | GATC | 3 cut(s) | 33, 111, 550 |
| NlaIII | CATG | 2 cut(s) | 424, 959 |
| NlaIV | GGNNCC | 1 cut(s) | 930 |
| NmuCI | GTSAC | 1 cut(s) | 262 |
| PctI | GAATGC | 1 cut(s) | 676 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 3 cut(s) | 310, 414, 796 |
| PleI | GAGTC | 2 cut(s) | 14, 343 |
| PmaCI | CACGTG | 1 cut(s) | 845 |
| PmlI | CACGTG | 1 cut(s) | 845 |
| PpsI | GAGTC | 2 cut(s) | 14, 343 |
| Ppu21I | YACGTR | 1 cut(s) | 845 |
| PshBI | ATTAAT | 1 cut(s) | 152 |
| Psp6I | CCWGG | 2 cut(s) | 117, 1022 |
| PspCI | CACGTG | 1 cut(s) | 845 |
| PspFI | CCCAGC | 1 cut(s) | 461 |
| PspGI | CCWGG | 2 cut(s) | 117, 1022 |
| PspN4I | GGNNCC | 1 cut(s) | 930 |
| PsuI | RGATCY | 2 cut(s) | 33, 111 |
| RsaI | GTAC | 3 cut(s) | 589, 865, 973 |
| RsaNI | GTAC | 3 cut(s) | 588, 864, 972 |
| SaqAI | TTAA | 5 cut(s) | 152, 233, 243, 684, 1057 |
| SatI | GCNGC | 3 cut(s) | 309, 413, 795 |
| Sau3AI | GATC | 3 cut(s) | 33, 111, 550 |
| SchI | GAGTC | 2 cut(s) | 14, 344 |
| ScrFI | CCNGG | 2 cut(s) | 119, 1024 |
| SduI | GDGCHC | 1 cut(s) | 571 |
| SfaNI | GCATC | 2 cut(s) | 1039, 1042 |
| Sse9I | AATT | 7 cut(s) | 433, 535, 560, 733, 749, 960, 1034 |
| SsiI | CCGC | 5 cut(s) | 190, 299, 412, 654, 826 |
| SspI | AATATT | 1 cut(s) | 350 |
| SspMI | CTAG | 5 cut(s) | 416, 689, 762, 867, 975 |
| StyD4I | CCNGG | 2 cut(s) | 117, 1022 |
| StyI | CCWWGG | 2 cut(s) | 60, 914 |
| TaaI | ACNGT | 1 cut(s) | 495 |
| TaiI | ACGT | 2 cut(s) | 509, 847 |
| TaqI | TCGA | 2 cut(s) | 145, 899 |
| TasI | AATT | 7 cut(s) | 433, 535, 560, 733, 749, 960, 1034 |
| TatI | WGTACW | 1 cut(s) | 587 |
| TauI | GCSGC | 1 cut(s) | 415 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| Tru1I | TTAA | 5 cut(s) | 152, 233, 243, 684, 1057 |
| Tru9I | TTAA | 5 cut(s) | 152, 233, 243, 684, 1057 |
| TscAI | CASTG | 3 cut(s) | 267, 991, 1050 |
| TseFI | GTSAC | 1 cut(s) | 262 |
| TseI | GCWGC | 2 cut(s) | 308, 794 |
| Tsp45I | GTSAC | 1 cut(s) | 262 |
| TspDTI | ATGAA | 4 cut(s) | 437, 599, 928, 989 |
| TspRI | CASTG | 3 cut(s) | 267, 991, 1050 |
| VspI | ATTAAT | 1 cut(s) | 152 |
| XapI | RAATTY | 3 cut(s) | 535, 733, 960 |
| XspI | CTAG | 5 cut(s) | 416, 689, 762, 867, 975 |