Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 229, 678 |
| AccI | GTMKAC | 1 cut(s) | 432 |
| AciI | CCGC | 1 cut(s) | 558 |
| AclWI | GGATC | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 612 |
| AfaI | GTAC | 3 cut(s) | 189, 322, 328 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 678 |
| AgsI | TTSAA | 3 cut(s) | 11, 551, 620 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AluBI | AGCT | 3 cut(s) | 14, 368, 374 |
| AluI | AGCT | 3 cut(s) | 14, 368, 374 |
| Alw21I | GWGCWC | 2 cut(s) | 364, 608 |
| Alw26I | GTCTC | 2 cut(s) | 65, 272 |
| AlwI | GGATC | 1 cut(s) | 126 |
| Ama87I | CYCGRG | 1 cut(s) | 330 |
| AoxI | GGCC | 1 cut(s) | 25 |
| ApoI | RAATTY | 1 cut(s) | 612 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 2 cut(s) | 103, 347 |
| AsuII | TTCGAA | 1 cut(s) | 489 |
| AvaI | CYCGRG | 1 cut(s) | 330 |
| Bbv12I | GWGCWC | 2 cut(s) | 364, 608 |
| BccI | CCATC | 1 cut(s) | 495 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 469, 503, 585, 619 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcoDI | GTCTC | 2 cut(s) | 65, 272 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfaI | CTAG | 5 cut(s) | 101, 243, 324, 371, 380 |
| BfmI | CTRYAG | 1 cut(s) | 573 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BmcAI | AGTACT | 1 cut(s) | 328 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| BmeT110I | CYCGRG | 1 cut(s) | 330 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 2 cut(s) | 514, 623 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 12, 44, 329, 361 |
| Bpu14I | TTCGAA | 1 cut(s) | 489 |
| BpuEI | CTTGAG | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 1 cut(s) | 46 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 678 |
| Bse118I | RCCGGY | 1 cut(s) | 23 |
| Bse1I | ACTGG | 1 cut(s) | 672 |
| Bse3DI | GCAATG | 1 cut(s) | 487 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 1 cut(s) | 46 |
| BseGI | GGATG | 4 cut(s) | 304, 409, 593, 638 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 678 |
| BseMI | GCAATG | 1 cut(s) | 487 |
| BseMII | CTCAG | 1 cut(s) | 591 |
| BseNI | ACTGG | 1 cut(s) | 672 |
| BseRI | GAGGAG | 1 cut(s) | 290 |
| BshFI | GGCC | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 2 cut(s) | 364, 608 |
| BsiHKCI | CYCGRG | 1 cut(s) | 330 |
| BsiSI | CCGG | 3 cut(s) | 24, 398, 569 |
| BslFI | GGGAC | 1 cut(s) | 576 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 678 |
| BsmAI | GTCTC | 2 cut(s) | 65, 272 |
| BsmFI | GGGAC | 1 cut(s) | 576 |
| BsnI | GGCC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 1 cut(s) | 330 |
| Bsp119I | TTCGAA | 1 cut(s) | 489 |
| Bsp1286I | GDGCHC | 2 cut(s) | 364, 608 |
| Bsp1407I | TGTACA | 1 cut(s) | 187 |
| Bsp143I | GATC | 2 cut(s) | 55, 118 |
| BspACI | CCGC | 1 cut(s) | 558 |
| BspANI | GGCC | 1 cut(s) | 27 |
| BspCNI | CTCAG | 1 cut(s) | 592 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspPI | GGATC | 1 cut(s) | 126 |
| BspT104I | TTCGAA | 1 cut(s) | 489 |
| BsrDI | GCAATG | 1 cut(s) | 487 |
| BsrFI | RCCGGY | 1 cut(s) | 23 |
| BsrGI | TGTACA | 1 cut(s) | 187 |
| BsrI | ACTGG | 1 cut(s) | 672 |
| BssAI | RCCGGY | 1 cut(s) | 23 |
| BssECI | CCNNGG | 1 cut(s) | 46 |
| BssMI | GATC | 2 cut(s) | 55, 118 |
| BssT1I | CCWWGG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 239 |
| BstAUI | TGTACA | 1 cut(s) | 187 |
| BstBI | TTCGAA | 1 cut(s) | 489 |
| BstC8I | GCNNGC | 2 cut(s) | 25, 168 |
| BstDEI | CTNAG | 1 cut(s) | 600 |
| BstF5I | GGATG | 4 cut(s) | 304, 409, 593, 638 |
| BstKTI | GATC | 2 cut(s) | 58, 121 |
| BstMAI | GTCTC | 2 cut(s) | 65, 272 |
| BstMBI | GATC | 2 cut(s) | 55, 118 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 20, 239, 359 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstNSI | RCATGY | 1 cut(s) | 425 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstSFI | CTRYAG | 1 cut(s) | 573 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 27 |
| BtsCI | GGATG | 4 cut(s) | 304, 409, 593, 638 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 2 cut(s) | 25, 168 |
| Cfr10I | RCCGGY | 1 cut(s) | 23 |
| Csp6I | GTAC | 3 cut(s) | 188, 321, 327 |
| CviAII | CATG | 1 cut(s) | 422 |
| CviQI | GTAC | 3 cut(s) | 188, 321, 327 |
| DdeI | CTNAG | 1 cut(s) | 600 |
| DpnI | GATC | 2 cut(s) | 57, 120 |
| DpnII | GATC | 2 cut(s) | 55, 118 |
| Eco130I | CCWWGG | 1 cut(s) | 46 |
| Eco88I | CYCGRG | 1 cut(s) | 330 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 46 |
| FaeI | CATG | 1 cut(s) | 425 |
| FaiI | YATR | 6 cut(s) | 54, 160, 225, 309, 423, 650 |
| FaqI | GGGAC | 1 cut(s) | 576 |
| FatI | CATG | 1 cut(s) | 421 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| FblI | GTMKAC | 1 cut(s) | 432 |
| FokI | GGATG | 4 cut(s) | 311, 416, 600, 645 |
| FspBI | CTAG | 5 cut(s) | 101, 243, 324, 371, 380 |
| HaeIII | GGCC | 1 cut(s) | 27 |
| HapII | CCGG | 3 cut(s) | 24, 398, 569 |
| Hin1II | CATG | 1 cut(s) | 425 |
| HincII | GTYRAC | 1 cut(s) | 64 |
| HindII | GTYRAC | 1 cut(s) | 64 |
| HindIII | AAGCTT | 1 cut(s) | 12 |
| HinfI | GANTC | 4 cut(s) | 314, 383, 551, 578 |
| HpaII | CCGG | 3 cut(s) | 24, 398, 569 |
| HphI | GGTGA | 2 cut(s) | 103, 347 |
| Hpy166II | GTNNAC | 3 cut(s) | 64, 94, 433 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 388 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| Hpy8I | GTNNAC | 3 cut(s) | 64, 94, 433 |
| HpyCH4V | TGCA | 3 cut(s) | 153, 166, 480 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 20, 239, 359 |
| HpyF3I | CTNAG | 1 cut(s) | 600 |
| Hsp92II | CATG | 1 cut(s) | 425 |
| KroI | GCCGGC | 1 cut(s) | 23 |
| KroNI | GCCGGC | 1 cut(s) | 25 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 2 cut(s) | 55, 118 |
| LmnI | GCTCC | 2 cut(s) | 400, 611 |
| LweI | GCATC | 2 cut(s) | 514, 623 |
| MaeI | CTAG | 5 cut(s) | 101, 243, 324, 371, 380 |
| MalI | GATC | 2 cut(s) | 57, 120 |
| MboI | GATC | 2 cut(s) | 55, 118 |
| MfeI | CAATTG | 1 cut(s) | 665 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MhlI | GDGCHC | 2 cut(s) | 364, 608 |
| MluCI | AATT | 6 cut(s) | 6, 250, 517, 546, 612, 665 |
| MroNI | GCCGGC | 1 cut(s) | 23 |
| MroXI | GAANNNNTTC | 1 cut(s) | 495 |
| MseI | TTAA | 1 cut(s) | 249 |
| MspI | CCGG | 3 cut(s) | 24, 398, 569 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MunI | CAATTG | 1 cut(s) | 665 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 20, 239, 359 |
| NaeI | GCCGGC | 1 cut(s) | 25 |
| NdeII | GATC | 2 cut(s) | 55, 118 |
| NgoMIV | GCCGGC | 1 cut(s) | 23 |
| NlaIII | CATG | 1 cut(s) | 425 |
| NspI | RCATGY | 1 cut(s) | 425 |
| NspV | TTCGAA | 1 cut(s) | 489 |
| PaeR7I | CTCGAG | 1 cut(s) | 330 |
| PdiI | GCCGGC | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 1 cut(s) | 495 |
| PfeI | GAWTC | 4 cut(s) | 314, 383, 551, 578 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 229, 678 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspXI | VCTCGAGB | 1 cut(s) | 330 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 3 cut(s) | 189, 322, 328 |
| RsaNI | GTAC | 3 cut(s) | 188, 321, 327 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| Sau3AI | GATC | 2 cut(s) | 55, 118 |
| ScaI | AGTACT | 1 cut(s) | 328 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SduI | GDGCHC | 2 cut(s) | 364, 608 |
| SetI | ASST | 9 cut(s) | 16, 132, 136, 240, 286, 337, 370, 376, 394 |
| SfaNI | GCATC | 2 cut(s) | 514, 623 |
| SfcI | CTRYAG | 1 cut(s) | 573 |
| Sfr274I | CTCGAG | 1 cut(s) | 330 |
| SfuI | TTCGAA | 1 cut(s) | 489 |
| SlaI | CTCGAG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 2 cut(s) | 330, 426 |
| SmoI | CTYRAG | 2 cut(s) | 330, 426 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| Sse9I | AATT | 6 cut(s) | 6, 250, 517, 546, 612, 665 |
| SsiI | CCGC | 1 cut(s) | 558 |
| SspMI | CTAG | 5 cut(s) | 101, 243, 324, 371, 380 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 46 |
| TaqI | TCGA | 5 cut(s) | 331, 489, 499, 581, 627 |
| TasI | AATT | 6 cut(s) | 6, 250, 517, 546, 612, 665 |
| TatI | WGTACW | 3 cut(s) | 187, 320, 326 |
| TfiI | GAWTC | 4 cut(s) | 314, 383, 551, 578 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TspDTI | ATGAA | 1 cut(s) | 453 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 229, 678 |
| XapI | RAATTY | 1 cut(s) | 612 |
| XceI | RCATGY | 1 cut(s) | 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 646 |
| XhoI | CTCGAG | 1 cut(s) | 330 |
| XmiI | GTMKAC | 1 cut(s) | 432 |
| XmnI | GAANNNNTTC | 1 cut(s) | 495 |
| XspI | CTAG | 5 cut(s) | 101, 243, 324, 371, 380 |
| ZrmI | AGTACT | 1 cut(s) | 328 |