Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 70 | 3.9e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 322 |
| Acc36I | ACCTGC | 1 cut(s) | 322 |
| AccI | GTMKAC | 1 cut(s) | 154 |
| AciI | CCGC | 1 cut(s) | 134 |
| AcsI | RAATTY | 1 cut(s) | 165 |
| AfaI | GTAC | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 178 |
| AgsI | TTSAA | 1 cut(s) | 197 |
| AhlI | ACTAGT | 1 cut(s) | 52 |
| Alw26I | GTCTC | 1 cut(s) | 302 |
| ApeKI | GCWGC | 2 cut(s) | 83, 220 |
| ApoI | RAATTY | 1 cut(s) | 165 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 2 cut(s) | 161, 257 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| BbvI | GCAGC | 2 cut(s) | 70, 207 |
| BccI | CCATC | 1 cut(s) | 23 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BcoDI | GTCTC | 1 cut(s) | 302 |
| BcuI | ACTAGT | 1 cut(s) | 52 |
| BfaI | CTAG | 2 cut(s) | 53, 273 |
| BfuAI | ACCTGC | 1 cut(s) | 322 |
| BisI | GCNGC | 2 cut(s) | 84, 221 |
| BlsI | GCNGC | 2 cut(s) | 85, 222 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 172 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 25, 55 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 178 |
| BseDI | CCNNGG | 1 cut(s) | 172 |
| BseGI | GGATG | 2 cut(s) | 187, 334 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 178 |
| BseXI | GCAGC | 2 cut(s) | 70, 207 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 178 |
| BsmAI | GTCTC | 1 cut(s) | 302 |
| BsmI | GAATGC | 1 cut(s) | 14 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BspMI | ACCTGC | 1 cut(s) | 322 |
| BssECI | CCNNGG | 1 cut(s) | 172 |
| BssMI | GATC | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 1 cut(s) | 172 |
| BstF5I | GGATG | 2 cut(s) | 187, 334 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMAI | GTCTC | 1 cut(s) | 302 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstNSI | RCATGY | 2 cut(s) | 110, 144 |
| BstV1I | GCAGC | 2 cut(s) | 70, 207 |
| BtsCI | GGATG | 2 cut(s) | 187, 334 |
| BveI | ACCTGC | 1 cut(s) | 322 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 50 |
| CviAII | CATG | 4 cut(s) | 107, 141, 248, 369 |
| CviJI | RGCY | 3 cut(s) | 96, 149, 259 |
| CviKI_1 | RGCY | 3 cut(s) | 96, 149, 259 |
| CviQI | GTAC | 1 cut(s) | 50 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 172 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| EcoRI | GAATTC | 1 cut(s) | 165 |
| EcoT14I | CCWWGG | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 172 |
| FaeI | CATG | 4 cut(s) | 110, 144, 251, 372 |
| FaiI | YATR | 8 cut(s) | 63, 74, 108, 128, 142, 188, 249, 370 |
| FatI | CATG | 4 cut(s) | 106, 140, 247, 368 |
| FblI | GTMKAC | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 2 cut(s) | 84, 221 |
| FokI | GGATG | 2 cut(s) | 194, 341 |
| Fsp4HI | GCNGC | 2 cut(s) | 84, 221 |
| FspBI | CTAG | 2 cut(s) | 53, 273 |
| GluI | GCNGC | 2 cut(s) | 84, 221 |
| Hin1II | CATG | 4 cut(s) | 110, 144, 251, 372 |
| HphI | GGTGA | 2 cut(s) | 161, 257 |
| Hpy166II | GTNNAC | 1 cut(s) | 155 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 25 |
| Hpy188III | TCNNGA | 1 cut(s) | 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 2 cut(s) | 110, 317 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| Hsp92II | CATG | 4 cut(s) | 110, 144, 251, 372 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LpnPI | CCDG | 3 cut(s) | 54, 135, 327 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 207 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 2 cut(s) | 53, 273 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MboII | GAAGA | 2 cut(s) | 38, 353 |
| MluCI | AATT | 2 cut(s) | 165, 318 |
| MnlI | CCTC | 2 cut(s) | 32, 130 |
| MseI | TTAA | 1 cut(s) | 123 |
| Mva1269I | GAATGC | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIII | CATG | 4 cut(s) | 110, 144, 251, 372 |
| NspI | RCATGY | 2 cut(s) | 110, 144 |
| PaqCI | CACCTGC | 1 cut(s) | 322 |
| PctI | GAATGC | 1 cut(s) | 14 |
| PkrI | GCNGC | 2 cut(s) | 85, 222 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| RsaI | GTAC | 1 cut(s) | 51 |
| RsaNI | GTAC | 1 cut(s) | 50 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| SatI | GCNGC | 2 cut(s) | 84, 221 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| SetI | ASST | 4 cut(s) | 43, 178, 270, 316 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SpeI | ACTAGT | 1 cut(s) | 52 |
| Sse9I | AATT | 2 cut(s) | 165, 318 |
| SsiI | CCGC | 1 cut(s) | 134 |
| SspMI | CTAG | 2 cut(s) | 53, 273 |
| StyI | CCWWGG | 1 cut(s) | 172 |
| TaqI | TCGA | 1 cut(s) | 214 |
| TaqII | GACCGA | 1 cut(s) | 106 |
| TasI | AATT | 2 cut(s) | 165, 318 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TseI | GCWGC | 2 cut(s) | 83, 220 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 1 cut(s) | 165 |
| XceI | RCATGY | 2 cut(s) | 110, 144 |
| XmiI | GTMKAC | 1 cut(s) | 154 |
| XspI | CTAG | 2 cut(s) | 53, 273 |