Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 12 - 80 | 3.3e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AcsI | RAATTY | 1 cut(s) | 90 |
| AfaI | GTAC | 3 cut(s) | 18, 75, 82 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AgsI | TTSAA | 2 cut(s) | 112, 209 |
| AjnI | CCWGG | 3 cut(s) | 76, 259, 293 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| Ama87I | CYCGRG | 1 cut(s) | 39 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 1 cut(s) | 290 |
| ApoI | RAATTY | 1 cut(s) | 90 |
| AvaI | CYCGRG | 1 cut(s) | 39 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 57, 90 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 277 |
| BccI | CCATC | 1 cut(s) | 292 |
| BceAI | ACGGC | 2 cut(s) | 99, 239 |
| BciT130I | CCWGG | 3 cut(s) | 78, 261, 295 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BisI | GCNGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 3 cut(s) | 78, 261, 295 |
| BmeT110I | CYCGRG | 1 cut(s) | 39 |
| BmiI | GGNNCC | 2 cut(s) | 27, 156 |
| BmrFI | CCNGG | 3 cut(s) | 78, 261, 295 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseBI | CCWGG | 3 cut(s) | 78, 261, 295 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 2 cut(s) | 256, 303 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 277 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BsiHKCI | CYCGRG | 1 cut(s) | 39 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsnI | GGCC | 1 cut(s) | 86 |
| BsoBI | CYCGRG | 1 cut(s) | 39 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BspLI | GGNNCC | 2 cut(s) | 27, 156 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| Bst2UI | CCWGG | 3 cut(s) | 78, 261, 295 |
| Bst4CI | ACNGT | 1 cut(s) | 273 |
| BstF5I | GGATG | 2 cut(s) | 256, 303 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 275 |
| BstNI | CCWGG | 3 cut(s) | 78, 261, 295 |
| BstSCI | CCNGG | 3 cut(s) | 76, 259, 293 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 277 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtsCI | GGATG | 2 cut(s) | 256, 303 |
| CsiI | ACCWGGT | 1 cut(s) | 76 |
| Csp6I | GTAC | 3 cut(s) | 17, 74, 81 |
| CviJI | RGCY | 4 cut(s) | 58, 86, 223, 278 |
| CviKI_1 | RGCY | 4 cut(s) | 58, 86, 223, 278 |
| CviQI | GTAC | 3 cut(s) | 17, 74, 81 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eco88I | CYCGRG | 1 cut(s) | 39 |
| EcoRII | CCWGG | 3 cut(s) | 76, 259, 293 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 1 cut(s) | 291 |
| FokI | GGATG | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 1 cut(s) | 291 |
| GluI | GCNGC | 1 cut(s) | 291 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 122 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 122 |
| HpyAV | CCTTC | 1 cut(s) | 97 |
| HpyCH4III | ACNGT | 1 cut(s) | 273 |
| HpyCH4V | TGCA | 1 cut(s) | 34 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 275 |
| LpnPI | CCDG | 8 cut(s) | 63, 90, 137, 223, 233, 246, 273, 280 |
| Lsp1109I | GCAGC | 1 cut(s) | 277 |
| LweI | GCATC | 1 cut(s) | 241 |
| MabI | ACCWGGT | 1 cut(s) | 76 |
| MfeI | CAATTG | 2 cut(s) | 115, 204 |
| MluCI | AATT | 3 cut(s) | 90, 115, 204 |
| MnlI | CCTC | 1 cut(s) | 16 |
| MspR9I | CCNGG | 3 cut(s) | 78, 261, 295 |
| MunI | CAATTG | 2 cut(s) | 115, 204 |
| MvaI | CCWGG | 3 cut(s) | 78, 261, 295 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 275 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 156 |
| PkrI | GCNGC | 1 cut(s) | 292 |
| Psp6I | CCWGG | 3 cut(s) | 76, 259, 293 |
| PspGI | CCWGG | 3 cut(s) | 76, 259, 293 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 156 |
| RsaI | GTAC | 3 cut(s) | 18, 75, 82 |
| RsaNI | GTAC | 3 cut(s) | 17, 74, 81 |
| SatI | GCNGC | 1 cut(s) | 291 |
| ScrFI | CCNGG | 3 cut(s) | 78, 261, 295 |
| SetI | ASST | 7 cut(s) | 27, 60, 82, 108, 127, 156, 175 |
| SexAI | ACCWGGT | 1 cut(s) | 76 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| Sse9I | AATT | 3 cut(s) | 90, 115, 204 |
| StyD4I | CCNGG | 3 cut(s) | 76, 259, 293 |
| TaaI | ACNGT | 1 cut(s) | 273 |
| TasI | AATT | 3 cut(s) | 90, 115, 204 |
| TatI | WGTACW | 1 cut(s) | 16 |
| TseI | GCWGC | 1 cut(s) | 290 |
| XapI | RAATTY | 1 cut(s) | 90 |
| XmiI | GTMKAC | 1 cut(s) | 65 |