Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 164 |
| AciI | CCGC | 2 cut(s) | 199, 396 |
| AfaI | GTAC | 3 cut(s) | 47, 116, 262 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 219, 233 |
| AluBI | AGCT | 1 cut(s) | 391 |
| AluI | AGCT | 1 cut(s) | 391 |
| AspS9I | GGNCC | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 176 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BfuAI | ACCTGC | 1 cut(s) | 164 |
| BisI | GCNGC | 1 cut(s) | 200 |
| BlsI | GCNGC | 1 cut(s) | 201 |
| Bme18I | GGWCC | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 1 cut(s) | 176 |
| BmsI | GCATC | 1 cut(s) | 368 |
| BoxI | GACNNNNGTC | 2 cut(s) | 208, 318 |
| BsaJI | CCNNGG | 1 cut(s) | 316 |
| BsaWI | WCCGGW | 1 cut(s) | 178 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 219, 233 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseDI | CCNNGG | 1 cut(s) | 316 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 219, 233 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BsgI | GTGCAG | 1 cut(s) | 166 |
| BsiSI | CCGG | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 219, 233 |
| Bsp1407I | TGTACA | 1 cut(s) | 114 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 2 cut(s) | 199, 396 |
| BspMI | ACCTGC | 1 cut(s) | 164 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrGI | TGTACA | 1 cut(s) | 114 |
| BssECI | CCNNGG | 1 cut(s) | 316 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 316 |
| Bst4CI | ACNGT | 2 cut(s) | 191, 260 |
| BstAUI | TGTACA | 1 cut(s) | 114 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 208, 318 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| BveI | ACCTGC | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 1 cut(s) | 176 |
| Csp6I | GTAC | 3 cut(s) | 46, 115, 261 |
| CviAII | CATG | 2 cut(s) | 22, 130 |
| CviJI | RGCY | 1 cut(s) | 391 |
| CviKI_1 | RGCY | 1 cut(s) | 391 |
| CviQI | GTAC | 3 cut(s) | 46, 115, 261 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| Eco130I | CCWWGG | 1 cut(s) | 316 |
| Eco47I | GGWCC | 1 cut(s) | 176 |
| EcoT14I | CCWWGG | 1 cut(s) | 316 |
| EcoT22I | ATGCAT | 1 cut(s) | 27 |
| ErhI | CCWWGG | 1 cut(s) | 316 |
| FaeI | CATG | 2 cut(s) | 25, 133 |
| FaiI | YATR | 8 cut(s) | 23, 27, 76, 131, 165, 242, 377, 379 |
| FatI | CATG | 2 cut(s) | 21, 129 |
| FauI | CCCGC | 1 cut(s) | 389 |
| FauNDI | CATATG | 1 cut(s) | 377 |
| Fnu4HI | GCNGC | 1 cut(s) | 200 |
| FokI | GGATG | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 200 |
| FspBI | CTAG | 1 cut(s) | 338 |
| GluI | GCNGC | 1 cut(s) | 200 |
| HapII | CCGG | 1 cut(s) | 179 |
| Hin1II | CATG | 2 cut(s) | 25, 133 |
| HindIII | AAGCTT | 1 cut(s) | 389 |
| HinfI | GANTC | 2 cut(s) | 18, 372 |
| HpaII | CCGG | 1 cut(s) | 179 |
| Hpy166II | GTNNAC | 2 cut(s) | 115, 194 |
| Hpy188I | TCNGA | 2 cut(s) | 66, 126 |
| Hpy188III | TCNNGA | 2 cut(s) | 234, 308 |
| Hpy8I | GTNNAC | 2 cut(s) | 115, 194 |
| HpyAV | CCTTC | 2 cut(s) | 131, 358 |
| HpyCH4III | ACNGT | 2 cut(s) | 191, 260 |
| HpyCH4IV | ACGT | 2 cut(s) | 238, 282 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 147, 359 |
| HpySE526I | ACGT | 2 cut(s) | 238, 282 |
| Hsp92II | CATG | 2 cut(s) | 25, 133 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 1 cut(s) | 140 |
| LpnPI | CCDG | 4 cut(s) | 159, 192, 219, 219 |
| LweI | GCATC | 1 cut(s) | 368 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeII | ACGT | 2 cut(s) | 238, 282 |
| MaeIII | GTNAC | 1 cut(s) | 328 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 1 cut(s) | 256 |
| MluCI | AATT | 1 cut(s) | 34 |
| MlyI | GAGTC | 1 cut(s) | 12 |
| MmeI | TCCRAC | 1 cut(s) | 210 |
| MnlI | CCTC | 6 cut(s) | 60, 132, 151, 163, 237, 375 |
| Mph1103I | ATGCAT | 1 cut(s) | 27 |
| MseI | TTAA | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 1 cut(s) | 199 |
| MspI | CCGG | 1 cut(s) | 179 |
| NdeI | CATATG | 1 cut(s) | 377 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 2 cut(s) | 25, 133 |
| NsiI | ATGCAT | 1 cut(s) | 27 |
| PfeI | GAWTC | 1 cut(s) | 372 |
| PkrI | GCNGC | 1 cut(s) | 201 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| PshAI | GACNNNNGTC | 2 cut(s) | 208, 318 |
| PspPI | GGNCC | 1 cut(s) | 176 |
| RsaI | GTAC | 3 cut(s) | 47, 116, 262 |
| RsaNI | GTAC | 3 cut(s) | 46, 115, 261 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| SatI | GCNGC | 1 cut(s) | 200 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 1 cut(s) | 176 |
| SchI | GAGTC | 1 cut(s) | 12 |
| SetI | ASST | 8 cut(s) | 178, 208, 241, 285, 298, 307, 322, 393 |
| SfaNI | GCATC | 1 cut(s) | 368 |
| SinI | GGWCC | 1 cut(s) | 176 |
| Sse9I | AATT | 1 cut(s) | 34 |
| SsiI | CCGC | 2 cut(s) | 199, 396 |
| SspMI | CTAG | 1 cut(s) | 338 |
| StyI | CCWWGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 2 cut(s) | 191, 260 |
| TaiI | ACGT | 2 cut(s) | 241, 285 |
| TasI | AATT | 1 cut(s) | 34 |
| TatI | WGTACW | 2 cut(s) | 45, 114 |
| TauI | GCSGC | 1 cut(s) | 202 |
| TfiI | GAWTC | 1 cut(s) | 372 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TspDTI | ATGAA | 6 cut(s) | 17, 40, 256, 257, 293, 364 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| VpaK11BI | GGWCC | 1 cut(s) | 176 |
| XspI | CTAG | 1 cut(s) | 338 |
| Zsp2I | ATGCAT | 1 cut(s) | 27 |