Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 212 |
| AccB1I | GGYRCC | 1 cut(s) | 212 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 2 cut(s) | 53, 474 |
| AcsI | RAATTY | 1 cut(s) | 542 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AfaI | GTAC | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 168, 601 |
| AflIII | ACRYGT | 1 cut(s) | 21 |
| AgsI | TTSAA | 3 cut(s) | 241, 541, 547 |
| AjnI | CCWGG | 1 cut(s) | 161 |
| AluBI | AGCT | 5 cut(s) | 116, 278, 335, 365, 660 |
| AluI | AGCT | 5 cut(s) | 116, 278, 335, 365, 660 |
| Alw26I | GTCTC | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApeKI | GCWGC | 3 cut(s) | 77, 290, 362 |
| ApoI | RAATTY | 1 cut(s) | 542 |
| Asp718I | GGTACC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 3 cut(s) | 510, 592, 639 |
| AsuHPI | GGTGA | 5 cut(s) | 33, 443, 455, 532, 568 |
| AvaII | GGWCC | 3 cut(s) | 510, 592, 639 |
| BanI | GGYRCC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 383 |
| BbvI | GCAGC | 3 cut(s) | 64, 302, 374 |
| BccI | CCATC | 3 cut(s) | 161, 362, 540 |
| BciT130I | CCWGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 119 |
| BfaI | CTAG | 3 cut(s) | 60, 300, 657 |
| BisI | GCNGC | 4 cut(s) | 78, 291, 363, 474 |
| BlsI | GCNGC | 4 cut(s) | 79, 292, 364, 475 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| Bme18I | GGWCC | 3 cut(s) | 510, 592, 639 |
| BmgT120I | GGNCC | 3 cut(s) | 510, 592, 639 |
| BmiI | GGNNCC | 3 cut(s) | 214, 593, 640 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BmsI | GCATC | 2 cut(s) | 214, 629 |
| BpiI | GAAGAC | 1 cut(s) | 383 |
| BpmI | CTGGAG | 2 cut(s) | 30, 482 |
| BsaJI | CCNNGG | 3 cut(s) | 162, 186, 513 |
| BsaWI | WCCGGW | 2 cut(s) | 428, 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 168, 601 |
| BseBI | CCWGG | 1 cut(s) | 163 |
| BseDI | CCNNGG | 3 cut(s) | 162, 186, 513 |
| BseGI | GGATG | 2 cut(s) | 172, 229 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 168, 601 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseXI | GCAGC | 3 cut(s) | 64, 302, 374 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BshNI | GGYRCC | 1 cut(s) | 212 |
| BsiSI | CCGG | 5 cut(s) | 416, 429, 441, 453, 466 |
| BslFI | GGGAC | 3 cut(s) | 605, 617, 652 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 168, 601 |
| BsmAI | GTCTC | 1 cut(s) | 119 |
| BsmFI | GGGAC | 3 cut(s) | 605, 617, 652 |
| BsnI | GGCC | 1 cut(s) | 262 |
| Bsp19I | CCATGG | 1 cut(s) | 513 |
| BspACI | CCGC | 2 cut(s) | 53, 474 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspLI | GGNNCC | 3 cut(s) | 214, 593, 640 |
| BspT107I | GGYRCC | 1 cut(s) | 212 |
| BssECI | CCNNGG | 3 cut(s) | 162, 186, 513 |
| BssT1I | CCWWGG | 2 cut(s) | 186, 513 |
| Bst2UI | CCWGG | 1 cut(s) | 163 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 2 cut(s) | 264, 471 |
| BstDEI | CTNAG | 1 cut(s) | 135 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstF5I | GGATG | 2 cut(s) | 172, 229 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstMAI | GTCTC | 1 cut(s) | 119 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 362, 626 |
| BstNI | CCWGG | 1 cut(s) | 163 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 3 cut(s) | 64, 302, 374 |
| BstV2I | GAAGAC | 1 cut(s) | 383 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtsCI | GGATG | 2 cut(s) | 172, 229 |
| Cac8I | GCNNGC | 2 cut(s) | 264, 471 |
| Cfr13I | GGNCC | 3 cut(s) | 510, 592, 639 |
| Csp6I | GTAC | 1 cut(s) | 213 |
| CviAII | CATG | 6 cut(s) | 50, 98, 146, 286, 482, 514 |
| CviQI | GTAC | 1 cut(s) | 213 |
| DdeI | CTNAG | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 2 cut(s) | 186, 513 |
| Eco147I | AGGCCT | 1 cut(s) | 262 |
| Eco47I | GGWCC | 3 cut(s) | 510, 592, 639 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| EcoRII | CCWGG | 1 cut(s) | 161 |
| EcoT14I | CCWWGG | 2 cut(s) | 186, 513 |
| ErhI | CCWWGG | 2 cut(s) | 186, 513 |
| FaeI | CATG | 6 cut(s) | 53, 101, 149, 289, 485, 517 |
| FaqI | GGGAC | 3 cut(s) | 605, 617, 652 |
| FatI | CATG | 6 cut(s) | 49, 97, 145, 285, 481, 513 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 291, 363, 474 |
| FokI | GGATG | 2 cut(s) | 179, 236 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 291, 363, 474 |
| FspBI | CTAG | 3 cut(s) | 60, 300, 657 |
| GluI | GCNGC | 4 cut(s) | 78, 291, 363, 474 |
| GsuI | CTGGAG | 2 cut(s) | 30, 482 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| HapII | CCGG | 5 cut(s) | 416, 429, 441, 453, 466 |
| Hin1II | CATG | 6 cut(s) | 53, 101, 149, 289, 485, 517 |
| HinfI | GANTC | 2 cut(s) | 131, 525 |
| HpaII | CCGG | 5 cut(s) | 416, 429, 441, 453, 466 |
| HphI | GGTGA | 5 cut(s) | 33, 443, 455, 532, 568 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 138 |
| Hpy188III | TCNNGA | 2 cut(s) | 221, 499 |
| HpyAV | CCTTC | 2 cut(s) | 235, 348 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 4 cut(s) | 266, 356, 402, 629 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 362, 626 |
| HpyF3I | CTNAG | 1 cut(s) | 135 |
| Hsp92II | CATG | 6 cut(s) | 53, 101, 149, 289, 485, 517 |
| KpnI | GGTACC | 1 cut(s) | 216 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| Lsp1109I | GCAGC | 3 cut(s) | 64, 302, 374 |
| LweI | GCATC | 2 cut(s) | 214, 629 |
| MaeI | CTAG | 3 cut(s) | 60, 300, 657 |
| MaeIII | GTNAC | 6 cut(s) | 17, 39, 173, 244, 431, 443 |
| MboII | GAAGA | 4 cut(s) | 326, 385, 388, 404 |
| MluCI | AATT | 4 cut(s) | 83, 397, 542, 585 |
| MluI | ACGCGT | 1 cut(s) | 21 |
| MnlI | CCTC | 6 cut(s) | 5, 49, 190, 252, 479, 501 |
| MseI | TTAA | 1 cut(s) | 308 |
| MslI | CAYNNNNRTG | 2 cut(s) | 198, 518 |
| MspA1I | CMGCKG | 1 cut(s) | 365 |
| MspI | CCGG | 5 cut(s) | 416, 429, 441, 453, 466 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MvaI | CCWGG | 1 cut(s) | 163 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 362, 626 |
| NcoI | CCATGG | 1 cut(s) | 513 |
| NlaIII | CATG | 6 cut(s) | 53, 101, 149, 289, 485, 517 |
| NlaIV | GGNNCC | 3 cut(s) | 214, 593, 640 |
| NmuCI | GTSAC | 3 cut(s) | 39, 431, 443 |
| NspI | RCATGY | 1 cut(s) | 53 |
| PceI | AGGCCT | 1 cut(s) | 262 |
| PfeI | GAWTC | 2 cut(s) | 131, 525 |
| PkrI | GCNGC | 4 cut(s) | 79, 292, 364, 475 |
| Psp6I | CCWGG | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 3 cut(s) | 214, 593, 640 |
| PspPI | GGNCC | 3 cut(s) | 510, 592, 639 |
| PvuII | CAGCTG | 1 cut(s) | 365 |
| RsaI | GTAC | 1 cut(s) | 214 |
| RsaNI | GTAC | 1 cut(s) | 213 |
| RseI | CAYNNNNRTG | 2 cut(s) | 198, 518 |
| SaqAI | TTAA | 1 cut(s) | 308 |
| SatI | GCNGC | 4 cut(s) | 78, 291, 363, 474 |
| Sau96I | GGNCC | 3 cut(s) | 510, 592, 639 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SfaNI | GCATC | 2 cut(s) | 214, 629 |
| SinI | GGWCC | 3 cut(s) | 510, 592, 639 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 198, 518 |
| Sse9I | AATT | 4 cut(s) | 83, 397, 542, 585 |
| SseBI | AGGCCT | 1 cut(s) | 262 |
| SsiI | CCGC | 2 cut(s) | 53, 474 |
| SspMI | CTAG | 3 cut(s) | 60, 300, 657 |
| StuI | AGGCCT | 1 cut(s) | 262 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| StyI | CCWWGG | 2 cut(s) | 186, 513 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaqI | TCGA | 1 cut(s) | 407 |
| TasI | AATT | 4 cut(s) | 83, 397, 542, 585 |
| TauI | GCSGC | 1 cut(s) | 476 |
| TfiI | GAWTC | 2 cut(s) | 131, 525 |
| Tru1I | TTAA | 1 cut(s) | 308 |
| Tru9I | TTAA | 1 cut(s) | 308 |
| TseFI | GTSAC | 3 cut(s) | 39, 431, 443 |
| TseI | GCWGC | 3 cut(s) | 77, 290, 362 |
| Tsp45I | GTSAC | 3 cut(s) | 39, 431, 443 |
| TspGWI | ACGGA | 1 cut(s) | 397 |
| VpaK11BI | GGWCC | 3 cut(s) | 510, 592, 639 |
| XapI | RAATTY | 1 cut(s) | 542 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XspI | CTAG | 3 cut(s) | 60, 300, 657 |