ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 354, 495 |
| AciI | CCGC | 2 cut(s) | 92, 202 |
| AclWI | GGATC | 1 cut(s) | 341 |
| AcoI | YGGCCR | 2 cut(s) | 378, 486 |
| AcsI | RAATTY | 2 cut(s) | 23, 447 |
| AcuI | CTGAAG | 2 cut(s) | 172, 588 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 354, 495 |
| AgsI | TTSAA | 5 cut(s) | 22, 118, 329, 446, 644 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 337, 369 |
| AleI | CACNNNNGTG | 1 cut(s) | 34 |
| AluBI | AGCT | 7 cut(s) | 97, 157, 233, 294, 438, 480, 620 |
| AluI | AGCT | 7 cut(s) | 97, 157, 233, 294, 438, 480, 620 |
| Alw21I | GWGCWC | 1 cut(s) | 459 |
| Alw26I | GTCTC | 1 cut(s) | 628 |
| Alw44I | GTGCAC | 1 cut(s) | 455 |
| AlwI | GGATC | 1 cut(s) | 341 |
| Ama87I | CYCGRG | 1 cut(s) | 148 |
| AoxI | GGCC | 2 cut(s) | 378, 486 |
| ApaLI | GTGCAC | 1 cut(s) | 455 |
| ApeKI | GCWGC | 3 cut(s) | 227, 230, 662 |
| ApoI | RAATTY | 2 cut(s) | 23, 447 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuC2I | CCSGG | 1 cut(s) | 382 |
| AvaI | CYCGRG | 1 cut(s) | 148 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BalI | TGGCCA | 1 cut(s) | 488 |
| Bbv12I | GWGCWC | 1 cut(s) | 459 |
| BbvI | GCAGC | 3 cut(s) | 214, 242, 649 |
| BccI | CCATC | 1 cut(s) | 478 |
| BceAI | ACGGC | 3 cut(s) | 389, 393, 683 |
| BcnI | CCSGG | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 628 |
| BfaI | CTAG | 2 cut(s) | 128, 141 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BisI | GCNGC | 4 cut(s) | 203, 228, 231, 663 |
| BlpI | GCTNAGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 4 cut(s) | 204, 229, 232, 664 |
| Bme1390I | CCNGG | 1 cut(s) | 382 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmeT110I | CYCGRG | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmrFI | CCNGG | 1 cut(s) | 382 |
| BmsI | GCATC | 2 cut(s) | 94, 604 |
| BpmI | CTGGAG | 1 cut(s) | 652 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 382 |
| Bsa29I | ATCGAT | 1 cut(s) | 416 |
| BsaBI | GATNNNNATC | 1 cut(s) | 267 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 536, 566 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 354, 495 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| Bse8I | GATNNNNATC | 1 cut(s) | 267 |
| BseCI | ATCGAT | 1 cut(s) | 416 |
| BseJI | GATNNNNATC | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 354, 495 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseRI | GAGGAG | 1 cut(s) | 527 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BseX3I | CGGCCG | 1 cut(s) | 378 |
| BseXI | GCAGC | 3 cut(s) | 214, 242, 649 |
| BsgI | GTGCAG | 1 cut(s) | 648 |
| Bsh1285I | CGRYCG | 1 cut(s) | 381 |
| BshFI | GGCC | 2 cut(s) | 380, 488 |
| BshVI | ATCGAT | 1 cut(s) | 416 |
| BsiEI | CGRYCG | 1 cut(s) | 381 |
| BsiHKAI | GWGCWC | 1 cut(s) | 459 |
| BsiHKCI | CYCGRG | 1 cut(s) | 148 |
| BsiSI | CCGG | 1 cut(s) | 381 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 354, 495 |
| BsmAI | GTCTC | 1 cut(s) | 628 |
| BsnI | GGCC | 2 cut(s) | 380, 488 |
| BsoBI | CYCGRG | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp143I | GATC | 1 cut(s) | 333 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 621 |
| BspACI | CCGC | 2 cut(s) | 92, 202 |
| BspANI | GGCC | 2 cut(s) | 380, 488 |
| BspDI | ATCGAT | 1 cut(s) | 416 |
| BspMAI | CTGCAG | 1 cut(s) | 232 |
| BspPI | GGATC | 1 cut(s) | 341 |
| BspQI | GCTCTTC | 1 cut(s) | 240 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BssMI | GATC | 1 cut(s) | 333 |
| Bst6I | CTCTTC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 2 cut(s) | 371, 621 |
| BstKTI | GATC | 1 cut(s) | 336 |
| BstMAI | GTCTC | 1 cut(s) | 628 |
| BstMBI | GATC | 1 cut(s) | 333 |
| BstMCI | CGRYCG | 1 cut(s) | 381 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 617 |
| BstNSI | RCATGY | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 380 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BstV1I | GCAGC | 3 cut(s) | 214, 242, 649 |
| BstZI | CGGCCG | 1 cut(s) | 378 |
| Bsu15I | ATCGAT | 1 cut(s) | 416 |
| BsuRI | GGCC | 2 cut(s) | 380, 488 |
| BsuTUI | ATCGAT | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| ClaI | ATCGAT | 1 cut(s) | 416 |
| CviAII | CATG | 5 cut(s) | 13, 239, 260, 472, 540 |
| DdeI | CTNAG | 2 cut(s) | 371, 621 |
| DpnI | GATC | 1 cut(s) | 335 |
| DpnII | GATC | 1 cut(s) | 333 |
| EaeI | YGGCCR | 2 cut(s) | 378, 486 |
| EagI | CGGCCG | 1 cut(s) | 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 240 |
| EarI | CTCTTC | 1 cut(s) | 240 |
| EclXI | CGGCCG | 1 cut(s) | 378 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| Eco52I | CGGCCG | 1 cut(s) | 378 |
| Eco57I | CTGAAG | 2 cut(s) | 172, 588 |
| Eco88I | CYCGRG | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 1 cut(s) | 124 |
| EcoT22I | ATGCAT | 2 cut(s) | 477, 597 |
| FaeI | CATG | 5 cut(s) | 16, 242, 263, 475, 543 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 81, 113, 207, 239 |
| FatI | CATG | 5 cut(s) | 12, 238, 259, 471, 539 |
| Fnu4HI | GCNGC | 4 cut(s) | 203, 228, 231, 663 |
| Fsp4HI | GCNGC | 4 cut(s) | 203, 228, 231, 663 |
| FspBI | CTAG | 2 cut(s) | 128, 141 |
| GluI | GCNGC | 4 cut(s) | 203, 228, 231, 663 |
| GsuI | CTGGAG | 1 cut(s) | 652 |
| HaeIII | GGCC | 2 cut(s) | 380, 488 |
| HapII | CCGG | 1 cut(s) | 381 |
| Hin1II | CATG | 5 cut(s) | 16, 242, 263, 475, 543 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 4 cut(s) | 70, 418, 526, 640 |
| HpaII | CCGG | 1 cut(s) | 381 |
| Hpy166II | GTNNAC | 1 cut(s) | 457 |
| Hpy188I | TCNGA | 3 cut(s) | 568, 588, 675 |
| Hpy188III | TCNNGA | 1 cut(s) | 337 |
| Hpy8I | GTNNAC | 1 cut(s) | 457 |
| HpyAV | CCTTC | 4 cut(s) | 196, 241, 379, 563 |
| HpyCH4IV | ACGT | 1 cut(s) | 425 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 107, 230, 410, 457, 475, 595, 665 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 617 |
| HpyF3I | CTNAG | 2 cut(s) | 371, 621 |
| HpySE526I | ACGT | 1 cut(s) | 425 |
| Hsp92II | CATG | 5 cut(s) | 16, 242, 263, 475, 543 |
| Kzo9I | GATC | 1 cut(s) | 333 |
| LguI | GCTCTTC | 1 cut(s) | 240 |
| LmnI | GCTCC | 2 cut(s) | 94, 544 |
| LpnPI | CCDG | 4 cut(s) | 17, 182, 394, 616 |
| Lsp1109I | GCAGC | 3 cut(s) | 214, 242, 649 |
| LweI | GCATC | 2 cut(s) | 94, 604 |
| MaeI | CTAG | 2 cut(s) | 128, 141 |
| MaeII | ACGT | 1 cut(s) | 425 |
| MalI | GATC | 1 cut(s) | 335 |
| MboI | GATC | 1 cut(s) | 333 |
| MboII | GAAGA | 3 cut(s) | 51, 227, 535 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| MlsI | TGGCCA | 1 cut(s) | 488 |
| MluCI | AATT | 3 cut(s) | 23, 163, 447 |
| MluNI | TGGCCA | 1 cut(s) | 488 |
| MmeI | TCCRAC | 2 cut(s) | 335, 446 |
| MnlI | CCTC | 4 cut(s) | 115, 301, 505, 508 |
| Mox20I | TGGCCA | 1 cut(s) | 488 |
| Mph1103I | ATGCAT | 2 cut(s) | 477, 597 |
| MscI | TGGCCA | 1 cut(s) | 488 |
| MseI | TTAA | 2 cut(s) | 395, 603 |
| MslI | CAYNNNNRTG | 1 cut(s) | 34 |
| Msp20I | TGGCCA | 1 cut(s) | 488 |
| MspI | CCGG | 1 cut(s) | 381 |
| MspR9I | CCNGG | 1 cut(s) | 382 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 617 |
| NciI | CCSGG | 1 cut(s) | 382 |
| NdeII | GATC | 1 cut(s) | 333 |
| NlaIII | CATG | 5 cut(s) | 16, 242, 263, 475, 543 |
| NsiI | ATGCAT | 2 cut(s) | 477, 597 |
| NspI | RCATGY | 1 cut(s) | 475 |
| OliI | CACNNNNGTG | 1 cut(s) | 34 |
| PciSI | GCTCTTC | 1 cut(s) | 240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 422 |
| PfeI | GAWTC | 4 cut(s) | 70, 418, 526, 640 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 354, 495 |
| PkrI | GCNGC | 4 cut(s) | 204, 229, 232, 664 |
| PpuMI | RGGWCCY | 1 cut(s) | 124 |
| Psp5II | RGGWCCY | 1 cut(s) | 124 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PspPPI | RGGWCCY | 1 cut(s) | 124 |
| PstI | CTGCAG | 1 cut(s) | 232 |
| RseI | CAYNNNNRTG | 1 cut(s) | 34 |
| SapI | GCTCTTC | 1 cut(s) | 240 |
| SaqAI | TTAA | 2 cut(s) | 395, 603 |
| SatI | GCNGC | 4 cut(s) | 203, 228, 231, 663 |
| Sau3AI | GATC | 1 cut(s) | 333 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 1 cut(s) | 382 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| SfaNI | GCATC | 2 cut(s) | 94, 604 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SinI | GGWCC | 1 cut(s) | 124 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 34 |
| Sse9I | AATT | 3 cut(s) | 23, 163, 447 |
| SsiI | CCGC | 2 cut(s) | 92, 202 |
| SspMI | CTAG | 2 cut(s) | 128, 141 |
| StyD4I | CCNGG | 1 cut(s) | 380 |
| TaiI | ACGT | 1 cut(s) | 428 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 3 cut(s) | 23, 163, 447 |
| TauI | GCSGC | 1 cut(s) | 205 |
| TfiI | GAWTC | 4 cut(s) | 70, 418, 526, 640 |
| Tru1I | TTAA | 2 cut(s) | 395, 603 |
| Tru9I | TTAA | 2 cut(s) | 395, 603 |
| TseI | GCWGC | 3 cut(s) | 227, 230, 662 |
| TspDTI | ATGAA | 2 cut(s) | 227, 518 |
| TspGWI | ACGGA | 2 cut(s) | 346, 524 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 354, 495 |
| VneI | GTGCAC | 1 cut(s) | 455 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| XapI | RAATTY | 2 cut(s) | 23, 447 |
| XceI | RCATGY | 1 cut(s) | 475 |
| XspI | CTAG | 2 cut(s) | 128, 141 |
| Zsp2I | ATGCAT | 2 cut(s) | 477, 597 |