Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 432, 639, 1026 |
| AfaI | GTAC | 1 cut(s) | 703 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 589, 854 |
| AgsI | TTSAA | 3 cut(s) | 40, 793, 983 |
| AhlI | ACTAGT | 1 cut(s) | 335 |
| AjnI | CCWGG | 1 cut(s) | 625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 156, 188 |
| AluBI | AGCT | 5 cut(s) | 487, 842, 878, 1042, 1088 |
| AluI | AGCT | 5 cut(s) | 487, 842, 878, 1042, 1088 |
| Alw26I | GTCTC | 2 cut(s) | 573, 980 |
| AoxI | GGCC | 1 cut(s) | 615 |
| ApeKI | GCWGC | 3 cut(s) | 550, 811, 1039 |
| ApoI | RAATTY | 3 cut(s) | 432, 639, 1026 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 432, 1146 |
| AsuHPI | GGTGA | 2 cut(s) | 174, 1169 |
| AsuNHI | GCTAGC | 3 cut(s) | 670, 820, 1084 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 485, 517 |
| BbvI | GCAGC | 3 cut(s) | 562, 823, 1051 |
| BccI | CCATC | 4 cut(s) | 78, 193, 251, 878 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 929, 963 |
| BciT130I | CCWGG | 1 cut(s) | 627 |
| BciVI | GTATCC | 1 cut(s) | 310 |
| BcoDI | GTCTC | 2 cut(s) | 573, 980 |
| BcuI | ACTAGT | 1 cut(s) | 335 |
| BfaI | CTAG | 7 cut(s) | 336, 560, 671, 821, 890, 1056, 1085 |
| BfuI | GTATCC | 1 cut(s) | 310 |
| BglII | AGATCT | 1 cut(s) | 355 |
| BisI | GCNGC | 3 cut(s) | 551, 812, 1040 |
| BlsI | GCNGC | 3 cut(s) | 552, 813, 1041 |
| Bme1390I | CCNGG | 1 cut(s) | 627 |
| BmrFI | CCNGG | 1 cut(s) | 627 |
| BmrI | ACTGGG | 1 cut(s) | 806 |
| BmsI | GCATC | 1 cut(s) | 965 |
| BmtI | GCTAGC | 3 cut(s) | 674, 824, 1088 |
| BmuI | ACTGGG | 1 cut(s) | 806 |
| BoxI | GACNNNNGTC | 1 cut(s) | 972 |
| BpmI | CTGGAG | 3 cut(s) | 509, 597, 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 249 |
| Bsa29I | ATCGAT | 1 cut(s) | 999 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1173 |
| BsaI | GGTCTC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 2 cut(s) | 625, 1017 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 589, 854 |
| Bse1I | ACTGG | 2 cut(s) | 296, 801 |
| Bse3DI | GCAATG | 3 cut(s) | 148, 386, 420 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1173 |
| BseBI | CCWGG | 1 cut(s) | 627 |
| BseCI | ATCGAT | 1 cut(s) | 999 |
| BseDI | CCNNGG | 2 cut(s) | 625, 1017 |
| BseGI | GGATG | 4 cut(s) | 89, 463, 753, 870 |
| BseJI | GATNNNNATC | 1 cut(s) | 1173 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 589, 854 |
| BseMI | GCAATG | 3 cut(s) | 148, 386, 420 |
| BseMII | CTCAG | 2 cut(s) | 119, 756 |
| BseNI | ACTGG | 2 cut(s) | 296, 801 |
| BseRI | GAGGAG | 1 cut(s) | 791 |
| BseXI | GCAGC | 3 cut(s) | 562, 823, 1051 |
| BsgI | GTGCAG | 2 cut(s) | 919, 1058 |
| BshFI | GGCC | 1 cut(s) | 617 |
| BshVI | ATCGAT | 1 cut(s) | 999 |
| BslFI | GGGAC | 3 cut(s) | 191, 608, 814 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 589, 854 |
| BsmAI | GTCTC | 2 cut(s) | 573, 980 |
| BsmFI | GGGAC | 3 cut(s) | 191, 608, 814 |
| BsmI | GAATGC | 3 cut(s) | 441, 1146, 1148 |
| BsnI | GGCC | 1 cut(s) | 617 |
| Bso31I | GGTCTC | 1 cut(s) | 573 |
| Bsp1407I | TGTACA | 1 cut(s) | 701 |
| Bsp143I | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| Bsp19I | CCATGG | 1 cut(s) | 1017 |
| BspANI | GGCC | 1 cut(s) | 617 |
| BspCNI | CTCAG | 2 cut(s) | 118, 757 |
| BspDI | ATCGAT | 1 cut(s) | 999 |
| BspOI | GCTAGC | 3 cut(s) | 674, 824, 1088 |
| BspTNI | GGTCTC | 1 cut(s) | 573 |
| BsrDI | GCAATG | 3 cut(s) | 148, 386, 420 |
| BsrGI | TGTACA | 1 cut(s) | 701 |
| BsrI | ACTGG | 2 cut(s) | 296, 801 |
| BssECI | CCNNGG | 2 cut(s) | 625, 1017 |
| BssMI | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| BssT1I | CCWWGG | 1 cut(s) | 1017 |
| Bst2UI | CCWGG | 1 cut(s) | 627 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 817 |
| BstAUI | TGTACA | 1 cut(s) | 701 |
| BstC8I | GCNNGC | 7 cut(s) | 72, 231, 555, 658, 672, 822, 1086 |
| BstDEI | CTNAG | 3 cut(s) | 105, 765, 838 |
| BstDSI | CCRYGG | 1 cut(s) | 1017 |
| BstF5I | GGATG | 4 cut(s) | 89, 463, 753, 870 |
| BstKTI | GATC | 4 cut(s) | 358, 889, 999, 1061 |
| BstMAI | GTCTC | 2 cut(s) | 573, 980 |
| BstMBI | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 817, 875 |
| BstNI | CCWGG | 1 cut(s) | 627 |
| BstNSI | RCATGY | 2 cut(s) | 557, 660 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 972 |
| BstSCI | CCNGG | 1 cut(s) | 625 |
| BstV1I | GCAGC | 3 cut(s) | 562, 823, 1051 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| Bsu15I | ATCGAT | 1 cut(s) | 999 |
| BsuI | GTATCC | 1 cut(s) | 310 |
| BsuRI | GGCC | 1 cut(s) | 617 |
| BsuTUI | ATCGAT | 1 cut(s) | 999 |
| BtgI | CCRYGG | 1 cut(s) | 1017 |
| BtsCI | GGATG | 4 cut(s) | 89, 463, 753, 870 |
| BtsI | GCAGTG | 1 cut(s) | 724 |
| BtsIMutI | CAGTG | 2 cut(s) | 248, 724 |
| Cac8I | GCNNGC | 7 cut(s) | 72, 231, 555, 658, 672, 822, 1086 |
| ClaI | ATCGAT | 1 cut(s) | 999 |
| Csp6I | GTAC | 1 cut(s) | 702 |
| CviAII | CATG | 8 cut(s) | 80, 401, 547, 554, 657, 1018, 1062, 1069 |
| CviQI | GTAC | 1 cut(s) | 702 |
| DdeI | CTNAG | 3 cut(s) | 105, 765, 838 |
| DpnI | GATC | 4 cut(s) | 357, 888, 998, 1060 |
| DpnII | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| Eco130I | CCWWGG | 1 cut(s) | 1017 |
| Eco31I | GGTCTC | 1 cut(s) | 573 |
| Eco32I | GATATC | 1 cut(s) | 1006 |
| EcoRI | GAATTC | 1 cut(s) | 432 |
| EcoRII | CCWGG | 1 cut(s) | 625 |
| EcoRV | GATATC | 1 cut(s) | 1006 |
| EcoT14I | CCWWGG | 1 cut(s) | 1017 |
| EcoT22I | ATGCAT | 1 cut(s) | 1148 |
| ErhI | CCWWGG | 1 cut(s) | 1017 |
| FaeI | CATG | 8 cut(s) | 83, 404, 550, 557, 660, 1021, 1065, 1072 |
| FaqI | GGGAC | 3 cut(s) | 191, 608, 814 |
| FatI | CATG | 8 cut(s) | 79, 400, 546, 553, 656, 1017, 1061, 1068 |
| Fnu4HI | GCNGC | 3 cut(s) | 551, 812, 1040 |
| FokI | GGATG | 4 cut(s) | 96, 450, 760, 857 |
| Fsp4HI | GCNGC | 3 cut(s) | 551, 812, 1040 |
| FspBI | CTAG | 7 cut(s) | 336, 560, 671, 821, 890, 1056, 1085 |
| GluI | GCNGC | 3 cut(s) | 551, 812, 1040 |
| GsuI | CTGGAG | 3 cut(s) | 509, 597, 1122 |
| HaeIII | GGCC | 1 cut(s) | 617 |
| Hin1II | CATG | 8 cut(s) | 83, 404, 550, 557, 660, 1021, 1065, 1072 |
| HinfI | GANTC | 6 cut(s) | 179, 292, 368, 779, 1103, 1129 |
| HphI | GGTGA | 2 cut(s) | 174, 1169 |
| Hpy166II | GTNNAC | 1 cut(s) | 733 |
| Hpy188I | TCNGA | 2 cut(s) | 766, 875 |
| Hpy188III | TCNNGA | 7 cut(s) | 321, 413, 467, 576, 965, 1139, 1151 |
| Hpy8I | GTNNAC | 1 cut(s) | 733 |
| HpyAV | CCTTC | 2 cut(s) | 379, 607 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 817, 875 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 765, 838 |
| Hsp92II | CATG | 8 cut(s) | 83, 404, 550, 557, 660, 1021, 1065, 1072 |
| Kzo9I | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| Lsp1109I | GCAGC | 3 cut(s) | 562, 823, 1051 |
| LweI | GCATC | 1 cut(s) | 965 |
| MaeI | CTAG | 7 cut(s) | 336, 560, 671, 821, 890, 1056, 1085 |
| MaeIII | GTNAC | 3 cut(s) | 687, 929, 1159 |
| MalI | GATC | 4 cut(s) | 357, 888, 998, 1060 |
| MboI | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| MboII | GAAGA | 1 cut(s) | 505 |
| MfeI | CAATTG | 1 cut(s) | 945 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MlyI | GAGTC | 3 cut(s) | 173, 788, 1112 |
| MmeI | TCCRAC | 1 cut(s) | 616 |
| Mph1103I | ATGCAT | 1 cut(s) | 1148 |
| MroXI | GAANNNNTTC | 2 cut(s) | 432, 1146 |
| MseI | TTAA | 3 cut(s) | 11, 113, 1110 |
| MslI | CAYNNNNRTG | 1 cut(s) | 379 |
| MspR9I | CCNGG | 1 cut(s) | 627 |
| MunI | CAATTG | 1 cut(s) | 945 |
| Mva1269I | GAATGC | 3 cut(s) | 441, 1146, 1148 |
| MvaI | CCWGG | 1 cut(s) | 627 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 817, 875 |
| NcoI | CCATGG | 1 cut(s) | 1017 |
| NdeII | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| NheI | GCTAGC | 3 cut(s) | 670, 820, 1084 |
| NlaIII | CATG | 8 cut(s) | 83, 404, 550, 557, 660, 1021, 1065, 1072 |
| NmuCI | GTSAC | 1 cut(s) | 929 |
| NsiI | ATGCAT | 1 cut(s) | 1148 |
| NspI | RCATGY | 2 cut(s) | 557, 660 |
| PaeI | GCATGC | 2 cut(s) | 557, 660 |
| PctI | GAATGC | 3 cut(s) | 441, 1146, 1148 |
| PdmI | GAANNNNTTC | 2 cut(s) | 432, 1146 |
| PfeI | GAWTC | 3 cut(s) | 292, 368, 1129 |
| PkrI | GCNGC | 3 cut(s) | 552, 813, 1041 |
| PleI | GAGTC | 3 cut(s) | 173, 787, 1111 |
| PpsI | GAGTC | 3 cut(s) | 173, 787, 1111 |
| PshAI | GACNNNNGTC | 1 cut(s) | 972 |
| Psp6I | CCWGG | 1 cut(s) | 625 |
| PspGI | CCWGG | 1 cut(s) | 625 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| RsaI | GTAC | 1 cut(s) | 703 |
| RsaNI | GTAC | 1 cut(s) | 702 |
| RseI | CAYNNNNRTG | 1 cut(s) | 379 |
| SaqAI | TTAA | 3 cut(s) | 11, 113, 1110 |
| SatI | GCNGC | 3 cut(s) | 551, 812, 1040 |
| Sau3AI | GATC | 4 cut(s) | 355, 886, 996, 1058 |
| SchI | GAGTC | 3 cut(s) | 173, 788, 1112 |
| ScrFI | CCNGG | 1 cut(s) | 627 |
| SfaNI | GCATC | 1 cut(s) | 965 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 379 |
| SmlI | CTYRAG | 1 cut(s) | 264 |
| SmoI | CTYRAG | 1 cut(s) | 264 |
| SpeI | ACTAGT | 1 cut(s) | 335 |
| SphI | GCATGC | 2 cut(s) | 557, 660 |
| SspMI | CTAG | 7 cut(s) | 336, 560, 671, 821, 890, 1056, 1085 |
| StyD4I | CCNGG | 1 cut(s) | 625 |
| StyI | CCWWGG | 1 cut(s) | 1017 |
| TaqI | TCGA | 2 cut(s) | 566, 999 |
| TatI | WGTACW | 1 cut(s) | 701 |
| TfiI | GAWTC | 3 cut(s) | 292, 368, 1129 |
| Tru1I | TTAA | 3 cut(s) | 11, 113, 1110 |
| Tru9I | TTAA | 3 cut(s) | 11, 113, 1110 |
| TscAI | CASTG | 2 cut(s) | 248, 724 |
| TseFI | GTSAC | 1 cut(s) | 929 |
| TseI | GCWGC | 3 cut(s) | 550, 811, 1039 |
| Tsp45I | GTSAC | 1 cut(s) | 929 |
| TspDTI | ATGAA | 2 cut(s) | 381, 561 |
| TspRI | CASTG | 2 cut(s) | 248, 724 |
| XapI | RAATTY | 3 cut(s) | 432, 639, 1026 |
| XceI | RCATGY | 2 cut(s) | 557, 660 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 192 |
| XmnI | GAANNNNTTC | 2 cut(s) | 432, 1146 |
| XspI | CTAG | 7 cut(s) | 336, 560, 671, 821, 890, 1056, 1085 |
| Zsp2I | ATGCAT | 1 cut(s) | 1148 |