ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 682 - 805 | 8.6e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1513 |
| Acc65I | GGTACC | 1 cut(s) | 1816 |
| AccB1I | GGYRCC | 2 cut(s) | 1816, 2054 |
| AccBSI | CCGCTC | 1 cut(s) | 1233 |
| AciI | CCGC | 2 cut(s) | 1233, 1976 |
| AclWI | GGATC | 3 cut(s) | 42, 1535, 1548 |
| AcoI | YGGCCR | 1 cut(s) | 230 |
| AcsI | RAATTY | 3 cut(s) | 251, 483, 1021 |
| AcuI | CTGAAG | 2 cut(s) | 953, 1290 |
| AfaI | GTAC | 8 cut(s) | 426, 444, 510, 613, 1178, 1527, 1818, 1825 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 46, 776, 1423, 1812, 1813, 2027, 2028 |
| AflII | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| AgeI | ACCGGT | 1 cut(s) | 1573 |
| AgsI | TTSAA | 8 cut(s) | 250, 257, 272, 806, 989, 1679, 1727, 1921 |
| AjnI | CCWGG | 4 cut(s) | 39, 1397, 1925, 2385 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1637, 1669 |
| Alw21I | GWGCWC | 1 cut(s) | 212 |
| Alw26I | GTCTC | 6 cut(s) | 477, 522, 655, 866, 1063, 2234 |
| AlwI | GGATC | 3 cut(s) | 42, 1535, 1548 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 517 |
| Ama87I | CYCGRG | 1 cut(s) | 827 |
| AoxI | GGCC | 2 cut(s) | 230, 1150 |
| ApeKI | GCWGC | 7 cut(s) | 94, 757, 1012, 1072, 2192, 2270, 2465 |
| ApoI | RAATTY | 3 cut(s) | 251, 483, 1021 |
| AsiGI | ACCGGT | 1 cut(s) | 1573 |
| Asp718I | GGTACC | 1 cut(s) | 1816 |
| AspLEI | GCGC | 3 cut(s) | 1346, 1494, 1522 |
| AspS9I | GGNCC | 2 cut(s) | 59, 2212 |
| AsuC2I | CCSGG | 3 cut(s) | 828, 829, 2429 |
| AsuHPI | GGTGA | 5 cut(s) | 217, 816, 893, 1030, 2339 |
| AsuII | TTCGAA | 2 cut(s) | 2146, 2288 |
| AsuNHI | GCTAGC | 1 cut(s) | 1474 |
| AvaI | CYCGRG | 1 cut(s) | 827 |
| AvaII | GGWCC | 2 cut(s) | 59, 2212 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1517, 1550 |
| BamHI | GGATCC | 1 cut(s) | 1540 |
| BanI | GGYRCC | 2 cut(s) | 1816, 2054 |
| BauI | CACGAG | 2 cut(s) | 743, 1118 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 212 |
| BbvCI | CCTCAGC | 1 cut(s) | 518 |
| BbvI | GCAGC | 7 cut(s) | 81, 769, 1024, 1084, 2204, 2257, 2477 |
| BccI | CCATC | 6 cut(s) | 626, 830, 1816, 2004, 2021, 2045 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BciT130I | CCWGG | 4 cut(s) | 41, 1399, 1927, 2387 |
| BciVI | GTATCC | 3 cut(s) | 391, 822, 2025 |
| BclI | TGATCA | 1 cut(s) | 1254 |
| BcnI | CCSGG | 3 cut(s) | 828, 829, 2429 |
| BcoDI | GTCTC | 6 cut(s) | 477, 522, 655, 866, 1063, 2234 |
| BfaI | CTAG | 9 cut(s) | 101, 369, 1086, 1347, 1475, 1716, 1812, 1821, 2454 |
| BfoI | RGCGCY | 1 cut(s) | 1495 |
| BfrI | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| BfuAI | ACCTGC | 1 cut(s) | 1513 |
| BfuI | GTATCC | 3 cut(s) | 391, 822, 2025 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1484 |
| BglII | AGATCT | 2 cut(s) | 500, 1857 |
| BisI | GCNGC | 7 cut(s) | 95, 758, 1013, 1073, 2193, 2271, 2466 |
| BlpI | GCTNAGC | 2 cut(s) | 1887, 2163 |
| BlsI | GCNGC | 7 cut(s) | 96, 759, 1014, 1074, 2194, 2272, 2467 |
| BmcAI | AGTACT | 2 cut(s) | 444, 1825 |
| Bme1390I | CCNGG | 7 cut(s) | 41, 828, 829, 1399, 1927, 2387, 2429 |
| Bme18I | GGWCC | 2 cut(s) | 59, 2212 |
| BmeT110I | CYCGRG | 1 cut(s) | 827 |
| BmgT120I | GGNCC | 2 cut(s) | 59, 2212 |
| BmiI | GGNNCC | 7 cut(s) | 333, 1542, 1551, 1818, 2056, 2116, 2346 |
| BmrFI | CCNGG | 7 cut(s) | 41, 828, 829, 1399, 1927, 2387, 2429 |
| BmrI | ACTGGG | 2 cut(s) | 336, 2312 |
| BmsI | GCATC | 4 cut(s) | 169, 709, 1393, 2214 |
| BmtI | GCTAGC | 1 cut(s) | 1478 |
| BmuI | ACTGGG | 2 cut(s) | 336, 2312 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1655, 1687 |
| Bpu10I | CCTNAGC | 3 cut(s) | 200, 518, 2086 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1887, 2163 |
| Bpu14I | TTCGAA | 2 cut(s) | 2146, 2288 |
| BpuEI | CTTGAG | 2 cut(s) | 1969, 2021 |
| BpuMI | CCSGG | 3 cut(s) | 828, 829, 2429 |
| BsaAI | YACGTR | 1 cut(s) | 615 |
| BsaBI | GATNNNNATC | 1 cut(s) | 180 |
| BsaI | GGTCTC | 2 cut(s) | 522, 655 |
| BsaJI | CCNNGG | 6 cut(s) | 233, 414, 827, 1398, 1544, 1925 |
| BsaWI | WCCGGW | 1 cut(s) | 1573 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 599, 629 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 46, 776, 1423, 1812, 1813, 2027, 2028 |
| Bse118I | RCCGGY | 1 cut(s) | 1573 |
| Bse1I | ACTGG | 5 cut(s) | 331, 544, 925, 2283, 2307 |
| Bse3DI | GCAATG | 1 cut(s) | 1476 |
| Bse8I | GATNNNNATC | 1 cut(s) | 180 |
| BseBI | CCWGG | 4 cut(s) | 41, 1399, 1927, 2387 |
| BseDI | CCNNGG | 6 cut(s) | 233, 414, 827, 1398, 1544, 1925 |
| BseGI | GGATG | 4 cut(s) | 274, 841, 985, 1408 |
| BseJI | GATNNNNATC | 1 cut(s) | 180 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 46, 776, 1423, 1812, 1813, 2027, 2028 |
| BseMI | GCAATG | 1 cut(s) | 1476 |
| BseMII | CTCAG | 4 cut(s) | 488, 509, 1053, 2154 |
| BseNI | ACTGG | 5 cut(s) | 331, 544, 925, 2283, 2307 |
| BseRI | GAGGAG | 4 cut(s) | 620, 797, 899, 1439 |
| BseXI | GCAGC | 7 cut(s) | 81, 769, 1024, 1084, 2204, 2257, 2477 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1578 |
| BshFI | GGCC | 2 cut(s) | 232, 1152 |
| BshNI | GGYRCC | 2 cut(s) | 1816, 2054 |
| BshTI | ACCGGT | 1 cut(s) | 1573 |
| BsiEI | CGRYCG | 1 cut(s) | 1578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 827 |
| BsiSI | CCGG | 4 cut(s) | 828, 1153, 1574, 2428 |
| BslFI | GGGAC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 46, 776, 1423, 1812, 1813, 2027, 2028 |
| BsmAI | GTCTC | 6 cut(s) | 477, 522, 655, 866, 1063, 2234 |
| BsmFI | GGGAC | 1 cut(s) | 200 |
| BsmI | GAATGC | 1 cut(s) | 1801 |
| BsnI | GGCC | 2 cut(s) | 232, 1152 |
| Bso31I | GGTCTC | 2 cut(s) | 522, 655 |
| BsoBI | CYCGRG | 1 cut(s) | 827 |
| Bsp119I | TTCGAA | 2 cut(s) | 2146, 2288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp1407I | TGTACA | 1 cut(s) | 424 |
| Bsp143I | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1887, 2163 |
| BspACI | CCGC | 2 cut(s) | 1233, 1976 |
| BspANI | GGCC | 2 cut(s) | 232, 1152 |
| BspCNI | CTCAG | 4 cut(s) | 487, 510, 1054, 2155 |
| BspLI | GGNNCC | 7 cut(s) | 333, 1542, 1551, 1818, 2056, 2116, 2346 |
| BspMI | ACCTGC | 1 cut(s) | 1513 |
| BspOI | GCTAGC | 1 cut(s) | 1478 |
| BspPI | GGATC | 3 cut(s) | 42, 1535, 1548 |
| BspT104I | TTCGAA | 2 cut(s) | 2146, 2288 |
| BspT107I | GGYRCC | 2 cut(s) | 1816, 2054 |
| BspTI | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| BspTNI | GGTCTC | 2 cut(s) | 522, 655 |
| BsrBI | CCGCTC | 1 cut(s) | 1233 |
| BsrDI | GCAATG | 1 cut(s) | 1476 |
| BsrFI | RCCGGY | 1 cut(s) | 1573 |
| BsrGI | TGTACA | 1 cut(s) | 424 |
| BsrI | ACTGG | 5 cut(s) | 331, 544, 925, 2283, 2307 |
| BssAI | RCCGGY | 1 cut(s) | 1573 |
| BssECI | CCNNGG | 6 cut(s) | 233, 414, 827, 1398, 1544, 1925 |
| BssMI | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| BssSI | CACGAG | 2 cut(s) | 743, 1118 |
| BssT1I | CCWWGG | 2 cut(s) | 233, 1544 |
| Bst2BI | CACGAG | 2 cut(s) | 743, 1118 |
| Bst2UI | CCWGG | 4 cut(s) | 41, 1399, 1927, 2387 |
| Bst4CI | ACNGT | 4 cut(s) | 59, 214, 284, 513 |
| Bst6I | CTCTTC | 1 cut(s) | 1674 |
| BstAFI | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2411 |
| BstAUI | TGTACA | 1 cut(s) | 424 |
| BstBAI | YACGTR | 1 cut(s) | 615 |
| BstBI | TTCGAA | 2 cut(s) | 2146, 2288 |
| BstC8I | GCNNGC | 7 cut(s) | 1476, 1485, 1999, 2169, 2185, 2229, 2309 |
| BstF5I | GGATG | 4 cut(s) | 274, 841, 985, 1408 |
| BstH2I | RGCGCY | 1 cut(s) | 1495 |
| BstHHI | GCGC | 3 cut(s) | 1346, 1494, 1522 |
| BstKTI | GATC | 8 cut(s) | 37, 184, 360, 503, 1257, 1543, 1860, 2410 |
| BstMAI | GTCTC | 6 cut(s) | 477, 522, 655, 866, 1063, 2234 |
| BstMBI | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| BstMCI | CGRYCG | 1 cut(s) | 1578 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1475, 1480, 1484, 1489, 2168, 2189, 2411, 2471 |
| BstNI | CCWGG | 4 cut(s) | 41, 1399, 1927, 2387 |
| BstNSI | RCATGY | 2 cut(s) | 2171, 2187 |
| BstSCI | CCNGG | 7 cut(s) | 39, 826, 827, 1397, 1925, 2385, 2427 |
| BstV1I | GCAGC | 7 cut(s) | 81, 769, 1024, 1084, 2204, 2257, 2477 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 4 cut(s) | 34, 500, 1540, 1857 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2125 |
| BstYI | RGATCY | 4 cut(s) | 34, 500, 1540, 1857 |
| BsuI | GTATCC | 3 cut(s) | 391, 822, 2025 |
| BsuRI | GGCC | 2 cut(s) | 232, 1152 |
| BtsCI | GGATG | 4 cut(s) | 274, 841, 985, 1408 |
| BtsI | GCAGTG | 1 cut(s) | 906 |
| BtsIMutI | CAGTG | 4 cut(s) | 518, 906, 918, 1621 |
| BveI | ACCTGC | 1 cut(s) | 1513 |
| Cac8I | GCNNGC | 7 cut(s) | 1476, 1485, 1999, 2169, 2185, 2229, 2309 |
| CaiI | CAGNNNCTG | 1 cut(s) | 517 |
| CfoI | GCGC | 3 cut(s) | 1346, 1494, 1522 |
| Cfr10I | RCCGGY | 1 cut(s) | 1573 |
| Cfr13I | GGNCC | 2 cut(s) | 59, 2212 |
| Cfr9I | CCCGGG | 1 cut(s) | 827 |
| CpoI | CGGWCCG | 1 cut(s) | 59 |
| CseI | GACGC | 2 cut(s) | 549, 2480 |
| CsiI | ACCWGGT | 1 cut(s) | 2385 |
| Csp6I | GTAC | 8 cut(s) | 425, 443, 509, 612, 1177, 1526, 1817, 1824 |
| CspAI | ACCGGT | 1 cut(s) | 1573 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2370, 2405 |
| CspI | CGGWCCG | 1 cut(s) | 59 |
| CviAII | CATG | 7 cut(s) | 72, 2078, 2119, 2168, 2184, 2221, 2411 |
| CviQI | GTAC | 8 cut(s) | 425, 443, 509, 612, 1177, 1526, 1817, 1824 |
| DpnI | GATC | 8 cut(s) | 36, 183, 359, 502, 1256, 1542, 1859, 2409 |
| DpnII | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| EaeI | YGGCCR | 1 cut(s) | 230 |
| Eam1104I | CTCTTC | 1 cut(s) | 1674 |
| EarI | CTCTTC | 1 cut(s) | 1674 |
| Eco130I | CCWWGG | 2 cut(s) | 233, 1544 |
| Eco31I | GGTCTC | 2 cut(s) | 522, 655 |
| Eco32I | GATATC | 2 cut(s) | 136, 1249 |
| Eco47I | GGWCC | 2 cut(s) | 59, 2212 |
| Eco57I | CTGAAG | 2 cut(s) | 953, 1290 |
| Eco88I | CYCGRG | 1 cut(s) | 827 |
| EcoRII | CCWGG | 4 cut(s) | 39, 1397, 1925, 2385 |
| EcoRV | GATATC | 2 cut(s) | 136, 1249 |
| EcoT14I | CCWWGG | 2 cut(s) | 233, 1544 |
| ErhI | CCWWGG | 2 cut(s) | 233, 1544 |
| FaeI | CATG | 7 cut(s) | 75, 2081, 2122, 2171, 2187, 2224, 2414 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 386, 418, 1235, 1267 |
| FaqI | GGGAC | 1 cut(s) | 200 |
| FatI | CATG | 7 cut(s) | 71, 2077, 2118, 2167, 2183, 2220, 2410 |
| FauI | CCCGC | 1 cut(s) | 1969 |
| FauNDI | CATATG | 2 cut(s) | 956, 994 |
| FbaI | TGATCA | 1 cut(s) | 1254 |
| Fnu4HI | GCNGC | 7 cut(s) | 95, 758, 1013, 1073, 2193, 2271, 2466 |
| FokI | GGATG | 4 cut(s) | 261, 848, 992, 1415 |
| Fsp4HI | GCNGC | 7 cut(s) | 95, 758, 1013, 1073, 2193, 2271, 2466 |
| FspBI | CTAG | 9 cut(s) | 101, 369, 1086, 1347, 1475, 1716, 1812, 1821, 2454 |
| GlaI | GCGC | 3 cut(s) | 1345, 1493, 1521 |
| GluI | GCNGC | 7 cut(s) | 95, 758, 1013, 1073, 2193, 2271, 2466 |
| HaeII | RGCGCY | 1 cut(s) | 1495 |
| HaeIII | GGCC | 2 cut(s) | 232, 1152 |
| HapII | CCGG | 4 cut(s) | 828, 1153, 1574, 2428 |
| HgaI | GACGC | 2 cut(s) | 549, 2480 |
| HhaI | GCGC | 3 cut(s) | 1346, 1494, 1522 |
| Hin1II | CATG | 7 cut(s) | 75, 2081, 2122, 2171, 2187, 2224, 2414 |
| Hin6I | GCGC | 3 cut(s) | 1344, 1492, 1520 |
| HinP1I | GCGC | 3 cut(s) | 1344, 1492, 1520 |
| HincII | GTYRAC | 1 cut(s) | 1597 |
| HindII | GTYRAC | 1 cut(s) | 1597 |
| HindIII | AAGCTT | 3 cut(s) | 258, 463, 1202 |
| HpaI | GTTAAC | 1 cut(s) | 1597 |
| HpaII | CCGG | 4 cut(s) | 828, 1153, 1574, 2428 |
| HphI | GGTGA | 5 cut(s) | 217, 816, 893, 1030, 2339 |
| Hpy166II | GTNNAC | 3 cut(s) | 425, 675, 1597 |
| Hpy8I | GTNNAC | 3 cut(s) | 425, 675, 1597 |
| Hpy99I | CGWCG | 1 cut(s) | 565 |
| HpyAV | CCTTC | 6 cut(s) | 292, 388, 1237, 1643, 1858, 2068 |
| HpyCH4III | ACNGT | 4 cut(s) | 59, 214, 284, 513 |
| HpyCH4IV | ACGT | 1 cut(s) | 614 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1475, 1480, 1484, 1489, 2168, 2189, 2411, 2471 |
| HpySE526I | ACGT | 1 cut(s) | 614 |
| Hsp92II | CATG | 7 cut(s) | 75, 2081, 2122, 2171, 2187, 2224, 2414 |
| HspAI | GCGC | 3 cut(s) | 1344, 1492, 1520 |
| KpnI | GGTACC | 1 cut(s) | 1820 |
| Ksp22I | TGATCA | 1 cut(s) | 1254 |
| KspAI | GTTAAC | 1 cut(s) | 1597 |
| Kzo9I | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| LmnI | GCTCC | 4 cut(s) | 1591, 1663, 2120, 2132 |
| Lsp1109I | GCAGC | 7 cut(s) | 81, 769, 1024, 1084, 2204, 2257, 2477 |
| LweI | GCATC | 4 cut(s) | 169, 709, 1393, 2214 |
| MabI | ACCWGGT | 1 cut(s) | 2385 |
| MaeI | CTAG | 9 cut(s) | 101, 369, 1086, 1347, 1475, 1716, 1812, 1821, 2454 |
| MaeII | ACGT | 1 cut(s) | 614 |
| MaeIII | GTNAC | 6 cut(s) | 322, 346, 456, 1113, 1412, 1834 |
| MalI | GATC | 8 cut(s) | 36, 183, 359, 502, 1256, 1542, 1859, 2409 |
| MbiI | CCGCTC | 1 cut(s) | 1233 |
| MboI | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| MflI | RGATCY | 4 cut(s) | 34, 500, 1540, 1857 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MlyI | GAGTC | 1 cut(s) | 1121 |
| MmeI | TCCRAC | 6 cut(s) | 360, 669, 813, 883, 1327, 1970 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2123 |
| MspA1I | CMGCKG | 3 cut(s) | 1015, 2195, 2468 |
| MspCI | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| MspI | CCGG | 4 cut(s) | 828, 1153, 1574, 2428 |
| MspR9I | CCNGG | 7 cut(s) | 41, 828, 829, 1399, 1927, 2387, 2429 |
| Mva1269I | GAATGC | 1 cut(s) | 1801 |
| MvaI | CCWGG | 4 cut(s) | 41, 1399, 1927, 2387 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1475, 1480, 1484, 1489, 2168, 2189, 2411, 2471 |
| NciI | CCSGG | 3 cut(s) | 828, 829, 2429 |
| NdeI | CATATG | 2 cut(s) | 956, 994 |
| NdeII | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| NheI | GCTAGC | 1 cut(s) | 1474 |
| NlaIII | CATG | 7 cut(s) | 75, 2081, 2122, 2171, 2187, 2224, 2414 |
| NlaIV | GGNNCC | 7 cut(s) | 333, 1542, 1551, 1818, 2056, 2116, 2346 |
| NmuCI | GTSAC | 3 cut(s) | 346, 1113, 1834 |
| NspI | RCATGY | 2 cut(s) | 2171, 2187 |
| NspV | TTCGAA | 2 cut(s) | 2146, 2288 |
| PaeI | GCATGC | 2 cut(s) | 2171, 2187 |
| PctI | GAATGC | 1 cut(s) | 1801 |
| PfeI | GAWTC | 9 cut(s) | 9, 176, 543, 580, 973, 1921, 2105, 2246, 2444 |
| PfoI | TCCNGGA | 1 cut(s) | 39 |
| PinAI | ACCGGT | 1 cut(s) | 1573 |
| PkrI | GCNGC | 7 cut(s) | 96, 759, 1014, 1074, 2194, 2272, 2467 |
| PleI | GAGTC | 1 cut(s) | 1120 |
| PpsI | GAGTC | 1 cut(s) | 1120 |
| Ppu21I | YACGTR | 1 cut(s) | 615 |
| Psp6I | CCWGG | 4 cut(s) | 39, 1397, 1925, 2385 |
| PspGI | CCWGG | 4 cut(s) | 39, 1397, 1925, 2385 |
| PspN4I | GGNNCC | 7 cut(s) | 333, 1542, 1551, 1818, 2056, 2116, 2346 |
| PspPI | GGNCC | 2 cut(s) | 59, 2212 |
| PstNI | CAGNNNCTG | 1 cut(s) | 517 |
| PsuI | RGATCY | 4 cut(s) | 34, 500, 1540, 1857 |
| PvuII | CAGCTG | 3 cut(s) | 1015, 2195, 2468 |
| RsaI | GTAC | 8 cut(s) | 426, 444, 510, 613, 1178, 1527, 1818, 1825 |
| RsaNI | GTAC | 8 cut(s) | 425, 443, 509, 612, 1177, 1526, 1817, 1824 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2123 |
| Rsr2I | CGGWCCG | 1 cut(s) | 59 |
| RsrII | CGGWCCG | 1 cut(s) | 59 |
| SatI | GCNGC | 7 cut(s) | 95, 758, 1013, 1073, 2193, 2271, 2466 |
| Sau3AI | GATC | 8 cut(s) | 34, 181, 357, 500, 1254, 1540, 1857, 2407 |
| Sau96I | GGNCC | 2 cut(s) | 59, 2212 |
| ScaI | AGTACT | 2 cut(s) | 444, 1825 |
| SchI | GAGTC | 1 cut(s) | 1121 |
| ScrFI | CCNGG | 7 cut(s) | 41, 828, 829, 1399, 1927, 2387, 2429 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SexAI | ACCWGGT | 1 cut(s) | 2385 |
| SfaNI | GCATC | 4 cut(s) | 169, 709, 1393, 2214 |
| SfuI | TTCGAA | 2 cut(s) | 2146, 2288 |
| SinI | GGWCC | 2 cut(s) | 59, 2212 |
| SmaI | CCCGGG | 1 cut(s) | 829 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2123 |
| SmlI | CTYRAG | 5 cut(s) | 1205, 1607, 1708, 1948, 2036 |
| SmoI | CTYRAG | 5 cut(s) | 1205, 1607, 1708, 1948, 2036 |
| SphI | GCATGC | 2 cut(s) | 2171, 2187 |
| SsiI | CCGC | 2 cut(s) | 1233, 1976 |
| SspI | AATATT | 2 cut(s) | 1127, 2047 |
| SspMI | CTAG | 9 cut(s) | 101, 369, 1086, 1347, 1475, 1716, 1812, 1821, 2454 |
| StyD4I | CCNGG | 7 cut(s) | 39, 826, 827, 1397, 1925, 2385, 2427 |
| StyI | CCWWGG | 2 cut(s) | 233, 1544 |
| TaaI | ACNGT | 4 cut(s) | 59, 214, 284, 513 |
| TaiI | ACGT | 1 cut(s) | 617 |
| TaqI | TCGA | 3 cut(s) | 563, 2146, 2288 |
| TaqII | GACCGA | 1 cut(s) | 546 |
| TatI | WGTACW | 4 cut(s) | 424, 442, 1176, 1823 |
| TfiI | GAWTC | 9 cut(s) | 9, 176, 543, 580, 973, 1921, 2105, 2246, 2444 |
| TscAI | CASTG | 4 cut(s) | 518, 906, 925, 1621 |
| TseFI | GTSAC | 3 cut(s) | 346, 1113, 1834 |
| TseI | GCWGC | 7 cut(s) | 94, 757, 1012, 1072, 2192, 2270, 2465 |
| Tsp45I | GTSAC | 3 cut(s) | 346, 1113, 1834 |
| TspDTI | ATGAA | 6 cut(s) | 539, 764, 1662, 1957, 2267, 2354 |
| TspGWI | ACGGA | 2 cut(s) | 29, 399 |
| TspMI | CCCGGG | 1 cut(s) | 827 |
| TspRI | CASTG | 4 cut(s) | 518, 906, 925, 1621 |
| Vha464I | CTTAAG | 3 cut(s) | 1205, 1607, 1708 |
| VpaK11BI | GGWCC | 2 cut(s) | 59, 2212 |
| XapI | RAATTY | 3 cut(s) | 251, 483, 1021 |
| XceI | RCATGY | 2 cut(s) | 2171, 2187 |
| XmaI | CCCGGG | 1 cut(s) | 827 |
| XspI | CTAG | 9 cut(s) | 101, 369, 1086, 1347, 1475, 1716, 1812, 1821, 2454 |
| ZrmI | AGTACT | 2 cut(s) | 444, 1825 |