Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 303 |
| AciI | CCGC | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 252 |
| AgsI | TTSAA | 1 cut(s) | 76 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 169 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AleI | CACNNNNGTG | 1 cut(s) | 27 |
| AluBI | AGCT | 4 cut(s) | 142, 205, 339, 476 |
| AluI | AGCT | 4 cut(s) | 142, 205, 339, 476 |
| Ama87I | CYCGRG | 1 cut(s) | 115 |
| AoxI | GGCC | 1 cut(s) | 367 |
| ApeKI | GCWGC | 1 cut(s) | 476 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 231 |
| AspS9I | GGNCC | 2 cut(s) | 367, 415 |
| AvaI | CYCGRG | 1 cut(s) | 115 |
| AvaII | GGWCC | 1 cut(s) | 415 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BbvI | GCAGC | 1 cut(s) | 463 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BciVI | GTATCC | 1 cut(s) | 95 |
| BfaI | CTAG | 4 cut(s) | 174, 333, 411, 508 |
| BfuI | GTATCC | 1 cut(s) | 95 |
| BglII | AGATCT | 1 cut(s) | 13 |
| BisI | GCNGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 1 cut(s) | 415 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 169 |
| BmeT110I | CYCGRG | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 2 cut(s) | 367, 415 |
| BmiI | GGNNCC | 1 cut(s) | 416 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmrI | ACTGGG | 1 cut(s) | 304 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BmuI | ACTGGG | 1 cut(s) | 304 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 194, 226 |
| BpuEI | CTTGAG | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 2 cut(s) | 363, 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 252 |
| Bse1I | ACTGG | 1 cut(s) | 299 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 2 cut(s) | 363, 364 |
| BseGI | GGATG | 2 cut(s) | 189, 462 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 252 |
| BseMII | CTCAG | 2 cut(s) | 134, 159 |
| BseNI | ACTGG | 1 cut(s) | 299 |
| BseRI | GAGGAG | 3 cut(s) | 152, 215, 233 |
| BseXI | GCAGC | 1 cut(s) | 463 |
| BshFI | GGCC | 1 cut(s) | 369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 115 |
| BslFI | GGGAC | 1 cut(s) | 346 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 252 |
| BsmFI | GGGAC | 1 cut(s) | 346 |
| BsnI | GGCC | 1 cut(s) | 369 |
| BsoBI | CYCGRG | 1 cut(s) | 115 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 271 |
| BspANI | GGCC | 1 cut(s) | 369 |
| BspCNI | CTCAG | 2 cut(s) | 135, 160 |
| BspLI | GGNNCC | 1 cut(s) | 416 |
| BsrI | ACTGG | 1 cut(s) | 299 |
| BssECI | CCNNGG | 2 cut(s) | 363, 364 |
| BssMI | GATC | 1 cut(s) | 13 |
| BssNAI | GTATAC | 1 cut(s) | 304 |
| Bst1107I | GTATAC | 1 cut(s) | 304 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 1 cut(s) | 400 |
| Bst6I | CTCTTC | 2 cut(s) | 4, 308 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 4 cut(s) | 143, 168, 248, 274 |
| BstF5I | GGATG | 2 cut(s) | 189, 462 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstNSI | RCATGY | 1 cut(s) | 410 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 463 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BstZ17I | GTATAC | 1 cut(s) | 304 |
| BsuI | GTATCC | 1 cut(s) | 95 |
| BsuRI | GGCC | 1 cut(s) | 369 |
| BtsCI | GGATG | 2 cut(s) | 189, 462 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 2 cut(s) | 367, 415 |
| CviAII | CATG | 3 cut(s) | 188, 371, 407 |
| DdeI | CTNAG | 4 cut(s) | 143, 168, 248, 274 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| DriI | GACNNNNNGTC | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 2 cut(s) | 4, 308 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 169 |
| EarI | CTCTTC | 2 cut(s) | 4, 308 |
| Eco47I | GGWCC | 1 cut(s) | 415 |
| Eco88I | CYCGRG | 1 cut(s) | 115 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 189 |
| FaeI | CATG | 3 cut(s) | 191, 374, 410 |
| FaiI | YATR | 9 cut(s) | 99, 125, 189, 237, 288, 304, 372, 391, 408 |
| FaqI | GGGAC | 1 cut(s) | 346 |
| FatI | CATG | 3 cut(s) | 187, 370, 406 |
| FblI | GTMKAC | 1 cut(s) | 303 |
| Fnu4HI | GCNGC | 1 cut(s) | 477 |
| FokI | GGATG | 2 cut(s) | 196, 449 |
| Fsp4HI | GCNGC | 1 cut(s) | 477 |
| FspBI | CTAG | 4 cut(s) | 174, 333, 411, 508 |
| GluI | GCNGC | 1 cut(s) | 477 |
| HaeIII | GGCC | 1 cut(s) | 369 |
| Hin1II | CATG | 3 cut(s) | 191, 374, 410 |
| HindIII | AAGCTT | 1 cut(s) | 337 |
| HinfI | GANTC | 2 cut(s) | 170, 232 |
| Hpy166II | GTNNAC | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 1 cut(s) | 154 |
| Hpy188III | TCNNGA | 1 cut(s) | 174 |
| Hpy8I | GTNNAC | 1 cut(s) | 304 |
| HpyAV | CCTTC | 2 cut(s) | 122, 376 |
| HpyCH4III | ACNGT | 1 cut(s) | 400 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 187, 374 |
| HpyF3I | CTNAG | 4 cut(s) | 143, 168, 248, 274 |
| Hsp92II | CATG | 3 cut(s) | 191, 374, 410 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LmnI | GCTCC | 2 cut(s) | 139, 202 |
| LpnPI | CCDG | 8 cut(s) | 36, 103, 180, 276, 280, 350, 377, 431 |
| Lsp1109I | GCAGC | 1 cut(s) | 463 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 4 cut(s) | 174, 333, 411, 508 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 4 cut(s) | 21, 325, 436, 501 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 1 cut(s) | 227 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MnlI | CCTC | 7 cut(s) | 130, 193, 211, 214, 387, 491, 496 |
| Mph1103I | ATGCAT | 1 cut(s) | 189 |
| MroXI | GAANNNNTTC | 1 cut(s) | 231 |
| MseI | TTAA | 1 cut(s) | 105 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 65 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| NdeII | GATC | 1 cut(s) | 13 |
| NlaIII | CATG | 3 cut(s) | 191, 374, 410 |
| NlaIV | GGNNCC | 1 cut(s) | 416 |
| NsiI | ATGCAT | 1 cut(s) | 189 |
| NspI | RCATGY | 1 cut(s) | 410 |
| OliI | CACNNNNGTG | 1 cut(s) | 27 |
| PaeI | GCATGC | 1 cut(s) | 410 |
| PasI | CCCWGGG | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 1 cut(s) | 231 |
| PfeI | GAWTC | 1 cut(s) | 232 |
| PkrI | GCNGC | 1 cut(s) | 478 |
| PleI | GAGTC | 1 cut(s) | 178 |
| PpsI | GAGTC | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 1 cut(s) | 416 |
| PspPI | GGNCC | 2 cut(s) | 367, 415 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 65 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 1 cut(s) | 477 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| Sau96I | GGNCC | 2 cut(s) | 367, 415 |
| SchI | GAGTC | 1 cut(s) | 179 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SetI | ASST | 8 cut(s) | 31, 133, 144, 207, 225, 341, 387, 478 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SinI | GGWCC | 1 cut(s) | 415 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 65 |
| SmlI | CTYRAG | 1 cut(s) | 348 |
| SmoI | CTYRAG | 1 cut(s) | 348 |
| SphI | GCATGC | 1 cut(s) | 410 |
| Sse9I | AATT | 1 cut(s) | 227 |
| SsiI | CCGC | 1 cut(s) | 271 |
| SspMI | CTAG | 4 cut(s) | 174, 333, 411, 508 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| TaaI | ACNGT | 1 cut(s) | 400 |
| TaqI | TCGA | 1 cut(s) | 356 |
| TasI | AATT | 1 cut(s) | 227 |
| TfiI | GAWTC | 1 cut(s) | 232 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TseI | GCWGC | 1 cut(s) | 476 |
| TspDTI | ATGAA | 2 cut(s) | 17, 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 415 |
| XbaI | TCTAGA | 1 cut(s) | 173 |
| XceI | RCATGY | 1 cut(s) | 410 |
| XmiI | GTMKAC | 1 cut(s) | 303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 231 |
| XspI | CTAG | 4 cut(s) | 174, 333, 411, 508 |
| Zsp2I | ATGCAT | 1 cut(s) | 189 |