ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 79 - 200 | 6.9e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 139, 218 |
| AccI | GTMKAC | 1 cut(s) | 400 |
| AcsI | RAATTY | 2 cut(s) | 478, 733 |
| AdeI | CACNNNGTG | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 139, 218, 263, 361, 762 |
| AgsI | TTSAA | 3 cut(s) | 122, 431, 744 |
| AjnI | CCWGG | 1 cut(s) | 755 |
| AluBI | AGCT | 6 cut(s) | 326, 368, 383, 581, 698, 780 |
| AluI | AGCT | 6 cut(s) | 326, 368, 383, 581, 698, 780 |
| Alw26I | GTCTC | 1 cut(s) | 632 |
| Ama87I | CYCGRG | 1 cut(s) | 699 |
| AoxI | GGCC | 1 cut(s) | 188 |
| ApeKI | GCWGC | 2 cut(s) | 317, 578 |
| ApoI | RAATTY | 2 cut(s) | 478, 733 |
| AseI | ATTAAT | 1 cut(s) | 234 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 479 |
| AspLEI | GCGC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 502 |
| AvaI | CYCGRG | 1 cut(s) | 699 |
| AxyI | CCTNAGG | 1 cut(s) | 165 |
| BbsI | GAAGAC | 1 cut(s) | 380 |
| BbvCI | CCTCAGC | 1 cut(s) | 369 |
| BbvI | GCAGC | 2 cut(s) | 304, 590 |
| BccI | CCATC | 1 cut(s) | 236 |
| BciT130I | CCWGG | 1 cut(s) | 757 |
| BclI | TGATCA | 1 cut(s) | 22 |
| BcoDI | GTCTC | 1 cut(s) | 632 |
| BfaI | CTAG | 3 cut(s) | 216, 603, 781 |
| BfmI | CTRYAG | 1 cut(s) | 693 |
| BisI | GCNGC | 2 cut(s) | 318, 579 |
| BlpI | GCTNAGC | 1 cut(s) | 768 |
| BlsI | GCNGC | 2 cut(s) | 319, 580 |
| Bme1390I | CCNGG | 1 cut(s) | 757 |
| BmeT110I | CYCGRG | 1 cut(s) | 699 |
| BmiI | GGNNCC | 1 cut(s) | 754 |
| BmrFI | CCNGG | 1 cut(s) | 757 |
| BmsI | GCATC | 2 cut(s) | 289, 717 |
| BpiI | GAAGAC | 1 cut(s) | 380 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| Bpu10I | CCTNAGC | 1 cut(s) | 369 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 768 |
| BsaJI | CCNNGG | 1 cut(s) | 394 |
| BsaWI | WCCGGW | 1 cut(s) | 256 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 139, 218, 263, 361, 762 |
| Bse21I | CCTNAGG | 1 cut(s) | 165 |
| Bse3DI | GCAATG | 1 cut(s) | 212 |
| BseBI | CCWGG | 1 cut(s) | 757 |
| BseDI | CCNNGG | 1 cut(s) | 394 |
| BseGI | GGATG | 3 cut(s) | 13, 511, 664 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 139, 218, 263, 361, 762 |
| BseMI | GCAATG | 1 cut(s) | 212 |
| BseMII | CTCAG | 3 cut(s) | 360, 363, 759 |
| BseXI | GCAGC | 2 cut(s) | 304, 590 |
| BseYI | CCCAGC | 1 cut(s) | 776 |
| BsgI | GTGCAG | 2 cut(s) | 397, 597 |
| Bsh1285I | CGRYCG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 190 |
| BsiEI | CGRYCG | 1 cut(s) | 257 |
| BsiHKCI | CYCGRG | 1 cut(s) | 699 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BslFI | GGGAC | 1 cut(s) | 703 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 139, 218, 263, 361, 762 |
| BsmAI | GTCTC | 1 cut(s) | 632 |
| BsmFI | GGGAC | 1 cut(s) | 703 |
| BsnI | GGCC | 1 cut(s) | 190 |
| BsoBI | CYCGRG | 1 cut(s) | 699 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 768 |
| BspANI | GGCC | 1 cut(s) | 190 |
| BspCNI | CTCAG | 3 cut(s) | 361, 362, 760 |
| BspLI | GGNNCC | 1 cut(s) | 754 |
| BsrDI | GCAATG | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 394 |
| BssMI | GATC | 1 cut(s) | 22 |
| BssNAI | GTATAC | 1 cut(s) | 401 |
| BssT1I | CCWWGG | 1 cut(s) | 394 |
| Bst1107I | GTATAC | 1 cut(s) | 401 |
| Bst2UI | CCWGG | 1 cut(s) | 757 |
| Bst4CI | ACNGT | 2 cut(s) | 130, 563 |
| Bst6I | CTCTTC | 1 cut(s) | 179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 4 cut(s) | 165, 349, 369, 768 |
| BstF5I | GGATG | 3 cut(s) | 13, 511, 664 |
| BstHHI | GCGC | 1 cut(s) | 595 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMAI | GTCTC | 1 cut(s) | 632 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstMCI | CGRYCG | 1 cut(s) | 257 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 62, 323, 380, 575, 599 |
| BstNI | CCWGG | 1 cut(s) | 757 |
| BstNSI | RCATGY | 1 cut(s) | 344 |
| BstSCI | CCNGG | 1 cut(s) | 755 |
| BstSFI | CTRYAG | 1 cut(s) | 693 |
| BstV1I | GCAGC | 2 cut(s) | 304, 590 |
| BstV2I | GAAGAC | 1 cut(s) | 380 |
| BstZ17I | GTATAC | 1 cut(s) | 401 |
| Bsu36I | CCTNAGG | 1 cut(s) | 165 |
| BsuRI | GGCC | 1 cut(s) | 190 |
| BtsCI | GGATG | 3 cut(s) | 13, 511, 664 |
| BtsI | GCAGTG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| CfoI | GCGC | 1 cut(s) | 595 |
| CviAII | CATG | 1 cut(s) | 341 |
| DdeI | CTNAG | 4 cut(s) | 165, 349, 369, 768 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| DraIII | CACNNNGTG | 1 cut(s) | 218 |
| Eam1104I | CTCTTC | 1 cut(s) | 179 |
| EarI | CTCTTC | 1 cut(s) | 179 |
| Eco130I | CCWWGG | 1 cut(s) | 394 |
| Eco81I | CCTNAGG | 1 cut(s) | 165 |
| Eco88I | CYCGRG | 1 cut(s) | 699 |
| EcoRII | CCWGG | 1 cut(s) | 755 |
| EcoT14I | CCWWGG | 1 cut(s) | 394 |
| ErhI | CCWWGG | 1 cut(s) | 394 |
| FaeI | CATG | 1 cut(s) | 344 |
| FaqI | GGGAC | 1 cut(s) | 703 |
| FatI | CATG | 1 cut(s) | 340 |
| FbaI | TGATCA | 1 cut(s) | 22 |
| FblI | GTMKAC | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 2 cut(s) | 318, 579 |
| FokI | GGATG | 3 cut(s) | 20, 518, 671 |
| Fsp4HI | GCNGC | 2 cut(s) | 318, 579 |
| FspBI | CTAG | 3 cut(s) | 216, 603, 781 |
| GlaI | GCGC | 1 cut(s) | 594 |
| GluI | GCNGC | 2 cut(s) | 318, 579 |
| GsaI | CCCAGC | 1 cut(s) | 780 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeIII | GGCC | 1 cut(s) | 190 |
| HapII | CCGG | 1 cut(s) | 257 |
| HhaI | GCGC | 1 cut(s) | 595 |
| Hin1II | CATG | 1 cut(s) | 344 |
| Hin6I | GCGC | 1 cut(s) | 593 |
| HinP1I | GCGC | 1 cut(s) | 593 |
| HinfI | GANTC | 4 cut(s) | 437, 493, 640, 740 |
| HpaII | CCGG | 1 cut(s) | 257 |
| HphI | GGTGA | 2 cut(s) | 152, 502 |
| Hpy166II | GTNNAC | 2 cut(s) | 212, 401 |
| Hpy188I | TCNGA | 5 cut(s) | 153, 293, 418, 450, 487 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 656 |
| Hpy8I | GTNNAC | 2 cut(s) | 212, 401 |
| HpyCH4III | ACNGT | 2 cut(s) | 130, 563 |
| HpyCH4V | TGCA | 4 cut(s) | 378, 513, 578, 730 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 62, 323, 380, 575, 599 |
| HpyF3I | CTNAG | 4 cut(s) | 165, 349, 369, 768 |
| Hsp92II | CATG | 1 cut(s) | 344 |
| HspAI | GCGC | 1 cut(s) | 593 |
| Ksp22I | TGATCA | 1 cut(s) | 22 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LpnPI | CCDG | 9 cut(s) | 125, 270, 288, 369, 641, 657, 693, 742, 769 |
| Lsp1109I | GCAGC | 2 cut(s) | 304, 590 |
| LweI | GCATC | 2 cut(s) | 289, 717 |
| MaeI | CTAG | 3 cut(s) | 216, 603, 781 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 5 cut(s) | 28, 193, 196, 380, 683 |
| MluCI | AATT | 6 cut(s) | 117, 231, 420, 478, 688, 733 |
| MlyI | GAGTC | 3 cut(s) | 431, 502, 634 |
| MnlI | CCTC | 6 cut(s) | 136, 180, 266, 364, 481, 783 |
| MroXI | GAANNNNTTC | 1 cut(s) | 479 |
| MseI | TTAA | 4 cut(s) | 102, 116, 194, 234 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspI | CCGG | 1 cut(s) | 257 |
| MspR9I | CCNGG | 1 cut(s) | 757 |
| MvaI | CCWGG | 1 cut(s) | 757 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 62, 323, 380, 575, 599 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 1 cut(s) | 344 |
| NlaIV | GGNNCC | 1 cut(s) | 754 |
| NspI | RCATGY | 1 cut(s) | 344 |
| PdmI | GAANNNNTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 1 cut(s) | 740 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 139, 218 |
| PkrI | GCNGC | 2 cut(s) | 319, 580 |
| PleI | GAGTC | 3 cut(s) | 431, 501, 634 |
| PpsI | GAGTC | 3 cut(s) | 431, 501, 634 |
| PshBI | ATTAAT | 1 cut(s) | 234 |
| Psp6I | CCWGG | 1 cut(s) | 755 |
| PspFI | CCCAGC | 1 cut(s) | 776 |
| PspGI | CCWGG | 1 cut(s) | 755 |
| PspN4I | GGNNCC | 1 cut(s) | 754 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| SaqAI | TTAA | 4 cut(s) | 102, 116, 194, 234 |
| SatI | GCNGC | 2 cut(s) | 318, 579 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| SchI | GAGTC | 3 cut(s) | 431, 502, 634 |
| ScrFI | CCNGG | 1 cut(s) | 757 |
| SfaNI | GCATC | 2 cut(s) | 289, 717 |
| SfcI | CTRYAG | 1 cut(s) | 693 |
| Sse9I | AATT | 6 cut(s) | 117, 231, 420, 478, 688, 733 |
| SspMI | CTAG | 3 cut(s) | 216, 603, 781 |
| StyD4I | CCNGG | 1 cut(s) | 755 |
| StyI | CCWWGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 2 cut(s) | 130, 563 |
| TaqI | TCGA | 3 cut(s) | 253, 328, 550 |
| TasI | AATT | 6 cut(s) | 117, 231, 420, 478, 688, 733 |
| TfiI | GAWTC | 1 cut(s) | 740 |
| Tru1I | TTAA | 4 cut(s) | 102, 116, 194, 234 |
| Tru9I | TTAA | 4 cut(s) | 102, 116, 194, 234 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TseI | GCWGC | 2 cut(s) | 317, 578 |
| TspRI | CASTG | 1 cut(s) | 177 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 139, 218 |
| VspI | ATTAAT | 1 cut(s) | 234 |
| XapI | RAATTY | 2 cut(s) | 478, 733 |
| XceI | RCATGY | 1 cut(s) | 344 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 198 |
| XmiI | GTMKAC | 1 cut(s) | 400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 479 |
| XspI | CTAG | 3 cut(s) | 216, 603, 781 |