Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 120, 939 |
| Acc16I | TGCGCA | 1 cut(s) | 518 |
| AccB1I | GGYRCC | 1 cut(s) | 703 |
| AccI | GTMKAC | 1 cut(s) | 874 |
| AccIII | TCCGGA | 1 cut(s) | 445 |
| AciI | CCGC | 1 cut(s) | 1040 |
| AcuI | CTGAAG | 1 cut(s) | 674 |
| AcyI | GRCGYC | 1 cut(s) | 704 |
| AfaI | GTAC | 4 cut(s) | 77, 377, 720, 833 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 395, 905 |
| AflII | CTTAAG | 1 cut(s) | 526 |
| AgsI | TTSAA | 6 cut(s) | 192, 424, 752, 780, 916, 1120 |
| AjnI | CCWGG | 1 cut(s) | 791 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 672, 704 |
| Alw21I | GWGCWC | 1 cut(s) | 844 |
| Alw26I | GTCTC | 2 cut(s) | 653, 791 |
| Aor13HI | TCCGGA | 1 cut(s) | 445 |
| AoxI | GGCC | 4 cut(s) | 92, 135, 386, 577 |
| AspLEI | GCGC | 2 cut(s) | 519, 706 |
| AspS9I | GGNCC | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 4 cut(s) | 73, 814, 1064, 1073 |
| BamHI | GGATCC | 2 cut(s) | 675, 787 |
| BanI | GGYRCC | 1 cut(s) | 703 |
| BanII | GRGCYC | 1 cut(s) | 844 |
| Bbv12I | GWGCWC | 1 cut(s) | 844 |
| BccI | CCATC | 3 cut(s) | 215, 397, 801 |
| BceAI | ACGGC | 1 cut(s) | 592 |
| BciT130I | CCWGG | 1 cut(s) | 793 |
| BciVI | GTATCC | 1 cut(s) | 357 |
| BclI | TGATCA | 1 cut(s) | 510 |
| BcoDI | GTCTC | 2 cut(s) | 653, 791 |
| BfaI | CTAG | 5 cut(s) | 185, 369, 554, 612, 903 |
| BfmI | CTRYAG | 1 cut(s) | 849 |
| BfoI | RGCGCY | 1 cut(s) | 707 |
| BfrI | CTTAAG | 1 cut(s) | 526 |
| BfuI | GTATCC | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 1041 |
| BlsI | GCNGC | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 1 cut(s) | 793 |
| BmgT120I | GGNCC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 3 cut(s) | 677, 705, 789 |
| BmrFI | CCNGG | 1 cut(s) | 793 |
| BmsI | GCATC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BsaAI | YACGTR | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 1 cut(s) | 704 |
| BsaI | GGTCTC | 1 cut(s) | 653 |
| BsaJI | CCNNGG | 4 cut(s) | 132, 359, 791, 792 |
| BsaWI | WCCGGW | 2 cut(s) | 175, 445 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 59, 89, 607, 637 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 395, 905 |
| Bse118I | RCCGGY | 1 cut(s) | 700 |
| Bse1I | ACTGG | 1 cut(s) | 417 |
| Bse3DI | GCAATG | 1 cut(s) | 819 |
| BseAI | TCCGGA | 1 cut(s) | 445 |
| BseBI | CCWGG | 1 cut(s) | 793 |
| BseDI | CCNNGG | 4 cut(s) | 132, 359, 791, 792 |
| BseGI | GGATG | 3 cut(s) | 405, 468, 832 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 395, 905 |
| BseMI | GCAATG | 1 cut(s) | 819 |
| BseMII | CTCAG | 2 cut(s) | 139, 611 |
| BseNI | ACTGG | 1 cut(s) | 417 |
| BseRI | GAGGAG | 4 cut(s) | 286, 607, 972, 991 |
| BshFI | GGCC | 4 cut(s) | 94, 137, 388, 579 |
| BshNI | GGYRCC | 1 cut(s) | 703 |
| BsiHKAI | GWGCWC | 1 cut(s) | 844 |
| BsiSI | CCGG | 3 cut(s) | 176, 446, 701 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 395, 905 |
| BsmAI | GTCTC | 2 cut(s) | 653, 791 |
| BsmBI | CGTCTC | 1 cut(s) | 791 |
| BsmI | GAATGC | 1 cut(s) | 309 |
| BsnI | GGCC | 4 cut(s) | 94, 137, 388, 579 |
| Bso31I | GGTCTC | 1 cut(s) | 653 |
| Bsp1286I | GDGCHC | 1 cut(s) | 844 |
| Bsp13I | TCCGGA | 1 cut(s) | 445 |
| Bsp143I | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| BspACI | CCGC | 1 cut(s) | 1040 |
| BspANI | GGCC | 4 cut(s) | 94, 137, 388, 579 |
| BspCNI | CTCAG | 2 cut(s) | 138, 612 |
| BspEI | TCCGGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 3 cut(s) | 677, 705, 789 |
| BspT107I | GGYRCC | 1 cut(s) | 703 |
| BspTI | CTTAAG | 1 cut(s) | 526 |
| BspTNI | GGTCTC | 1 cut(s) | 653 |
| BsrDI | GCAATG | 1 cut(s) | 819 |
| BsrFI | RCCGGY | 1 cut(s) | 700 |
| BsrI | ACTGG | 1 cut(s) | 417 |
| BssAI | RCCGGY | 1 cut(s) | 700 |
| BssECI | CCNNGG | 4 cut(s) | 132, 359, 791, 792 |
| BssMI | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| BssNI | GRCGYC | 1 cut(s) | 704 |
| BssT1I | CCWWGG | 2 cut(s) | 132, 359 |
| Bst2UI | CCWGG | 1 cut(s) | 793 |
| Bst4CI | ACNGT | 5 cut(s) | 375, 664, 802, 1052, 1061 |
| Bst6I | CTCTTC | 2 cut(s) | 411, 474 |
| BstACI | GRCGYC | 1 cut(s) | 704 |
| BstAFI | CTTAAG | 1 cut(s) | 526 |
| BstBAI | YACGTR | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 1 cut(s) | 840 |
| BstDEI | CTNAG | 3 cut(s) | 125, 142, 620 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 903 |
| BstF5I | GGATG | 3 cut(s) | 405, 468, 832 |
| BstH2I | RGCGCY | 1 cut(s) | 707 |
| BstHHI | GCGC | 2 cut(s) | 519, 706 |
| BstKTI | GATC | 9 cut(s) | 54, 131, 227, 358, 445, 513, 678, 790, 953 |
| BstMAI | GTCTC | 2 cut(s) | 653, 791 |
| BstMBI | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 91, 143, 263, 559 |
| BstNI | CCWGG | 1 cut(s) | 793 |
| BstSCI | CCNGG | 1 cut(s) | 791 |
| BstSFI | CTRYAG | 1 cut(s) | 849 |
| BstX2I | RGATCY | 4 cut(s) | 128, 355, 675, 787 |
| BstYI | RGATCY | 4 cut(s) | 128, 355, 675, 787 |
| BsuI | GTATCC | 1 cut(s) | 357 |
| BsuRI | GGCC | 4 cut(s) | 94, 137, 388, 579 |
| BtsCI | GGATG | 3 cut(s) | 405, 468, 832 |
| Cac8I | GCNNGC | 1 cut(s) | 840 |
| CfoI | GCGC | 2 cut(s) | 519, 706 |
| Cfr10I | RCCGGY | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 1 cut(s) | 136 |
| CseI | GACGC | 1 cut(s) | 246 |
| Csp6I | GTAC | 4 cut(s) | 76, 376, 719, 832 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 483, 518 |
| CviAII | CATG | 3 cut(s) | 41, 514, 605 |
| CviQI | GTAC | 4 cut(s) | 76, 376, 719, 832 |
| DdeI | CTNAG | 3 cut(s) | 125, 142, 620 |
| DinI | GGCGCC | 1 cut(s) | 705 |
| DpnI | GATC | 9 cut(s) | 53, 130, 226, 357, 444, 512, 677, 789, 952 |
| DpnII | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| Eam1104I | CTCTTC | 2 cut(s) | 411, 474 |
| EarI | CTCTTC | 2 cut(s) | 411, 474 |
| Ecl136II | GAGCTC | 1 cut(s) | 842 |
| Eco130I | CCWWGG | 2 cut(s) | 132, 359 |
| Eco147I | AGGCCT | 1 cut(s) | 388 |
| Eco24I | GRGCYC | 1 cut(s) | 844 |
| Eco31I | GGTCTC | 1 cut(s) | 653 |
| Eco32I | GATATC | 1 cut(s) | 602 |
| Eco53kI | GAGCTC | 1 cut(s) | 842 |
| Eco57I | CTGAAG | 1 cut(s) | 674 |
| EcoICRI | GAGCTC | 1 cut(s) | 842 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 903 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoRII | CCWGG | 1 cut(s) | 791 |
| EcoRV | GATATC | 1 cut(s) | 602 |
| EcoT14I | CCWWGG | 2 cut(s) | 132, 359 |
| EcoT38I | GRGCYC | 1 cut(s) | 844 |
| EgeI | GGCGCC | 1 cut(s) | 705 |
| EheI | GGCGCC | 1 cut(s) | 705 |
| ErhI | CCWWGG | 2 cut(s) | 132, 359 |
| Esp3I | CGTCTC | 1 cut(s) | 791 |
| FaeI | CATG | 3 cut(s) | 44, 517, 608 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 125, 157, 672, 704 |
| FatI | CATG | 3 cut(s) | 40, 513, 604 |
| FauNDI | CATATG | 1 cut(s) | 262 |
| FbaI | TGATCA | 1 cut(s) | 510 |
| FblI | GTMKAC | 1 cut(s) | 874 |
| Fnu4HI | GCNGC | 1 cut(s) | 1041 |
| FokI | GGATG | 3 cut(s) | 412, 475, 839 |
| FriOI | GRGCYC | 1 cut(s) | 844 |
| Fsp4HI | GCNGC | 1 cut(s) | 1041 |
| FspAI | RTGCGCAY | 1 cut(s) | 518 |
| FspBI | CTAG | 5 cut(s) | 185, 369, 554, 612, 903 |
| FspI | TGCGCA | 1 cut(s) | 518 |
| GlaI | GCGC | 2 cut(s) | 518, 705 |
| GluI | GCNGC | 1 cut(s) | 1041 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeII | RGCGCY | 1 cut(s) | 707 |
| HaeIII | GGCC | 4 cut(s) | 94, 137, 388, 579 |
| HapII | CCGG | 3 cut(s) | 176, 446, 701 |
| HgaI | GACGC | 1 cut(s) | 246 |
| HhaI | GCGC | 2 cut(s) | 519, 706 |
| Hin1I | GRCGYC | 1 cut(s) | 704 |
| Hin1II | CATG | 3 cut(s) | 44, 517, 608 |
| Hin6I | GCGC | 2 cut(s) | 517, 704 |
| HinP1I | GCGC | 2 cut(s) | 517, 704 |
| HindIII | AAGCTT | 2 cut(s) | 100, 669 |
| HinfI | GANTC | 5 cut(s) | 46, 179, 195, 274, 622 |
| HpaII | CCGG | 3 cut(s) | 176, 446, 701 |
| HphI | GGTGA | 4 cut(s) | 73, 814, 1064, 1073 |
| Hpy166II | GTNNAC | 2 cut(s) | 378, 875 |
| Hpy188I | TCNGA | 7 cut(s) | 10, 51, 128, 220, 693, 1047, 1083 |
| Hpy188III | TCNNGA | 6 cut(s) | 192, 446, 651, 780, 954, 1100 |
| Hpy8I | GTNNAC | 2 cut(s) | 378, 875 |
| HpyAV | CCTTC | 4 cut(s) | 58, 401, 418, 961 |
| HpyCH4III | ACNGT | 5 cut(s) | 375, 664, 802, 1052, 1061 |
| HpyCH4IV | ACGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 3 cut(s) | 169, 431, 494 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 91, 143, 263, 559 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 142, 620 |
| HpySE526I | ACGT | 1 cut(s) | 202 |
| Hsp92I | GRCGYC | 1 cut(s) | 704 |
| Hsp92II | CATG | 3 cut(s) | 44, 517, 608 |
| HspAI | GCGC | 2 cut(s) | 517, 704 |
| KasI | GGCGCC | 1 cut(s) | 703 |
| Kpn2I | TCCGGA | 1 cut(s) | 445 |
| Ksp22I | TGATCA | 1 cut(s) | 510 |
| Kzo9I | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| LmnI | GCTCC | 1 cut(s) | 67 |
| LweI | GCATC | 1 cut(s) | 156 |
| MaeI | CTAG | 5 cut(s) | 185, 369, 554, 612, 903 |
| MaeII | ACGT | 1 cut(s) | 202 |
| MaeIII | GTNAC | 5 cut(s) | 43, 536, 755, 1061, 1100 |
| MalI | GATC | 9 cut(s) | 53, 130, 226, 357, 444, 512, 677, 789, 952 |
| MboI | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| MboII | GAAGA | 4 cut(s) | 23, 428, 491, 557 |
| MfeI | CAATTG | 1 cut(s) | 710 |
| MflI | RGATCY | 4 cut(s) | 128, 355, 675, 787 |
| MhlI | GDGCHC | 1 cut(s) | 844 |
| MluCI | AATT | 6 cut(s) | 114, 228, 247, 438, 710, 741 |
| Mly113I | GGCGCC | 1 cut(s) | 704 |
| MlyI | GAGTC | 5 cut(s) | 40, 173, 204, 283, 631 |
| MmeI | TCCRAC | 2 cut(s) | 804, 1061 |
| MroI | TCCGGA | 1 cut(s) | 445 |
| MseI | TTAA | 1 cut(s) | 527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 265 |
| MspCI | CTTAAG | 1 cut(s) | 526 |
| MspI | CCGG | 3 cut(s) | 176, 446, 701 |
| MspR9I | CCNGG | 1 cut(s) | 793 |
| MunI | CAATTG | 1 cut(s) | 710 |
| Mva1269I | GAATGC | 1 cut(s) | 309 |
| MvaI | CCWGG | 1 cut(s) | 793 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 91, 143, 263, 559 |
| NarI | GGCGCC | 1 cut(s) | 704 |
| NdeI | CATATG | 1 cut(s) | 262 |
| NdeII | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| NlaIII | CATG | 3 cut(s) | 44, 517, 608 |
| NlaIV | GGNNCC | 3 cut(s) | 677, 705, 789 |
| NmuCI | GTSAC | 3 cut(s) | 43, 1061, 1100 |
| NsbI | TGCGCA | 1 cut(s) | 518 |
| PasI | CCCWGGG | 1 cut(s) | 792 |
| PceI | AGGCCT | 1 cut(s) | 388 |
| PctI | GAATGC | 1 cut(s) | 309 |
| PkrI | GCNGC | 1 cut(s) | 1042 |
| PleI | GAGTC | 5 cut(s) | 40, 173, 203, 282, 630 |
| PluTI | GGCGCC | 1 cut(s) | 707 |
| PpsI | GAGTC | 5 cut(s) | 40, 173, 203, 282, 630 |
| Ppu21I | YACGTR | 1 cut(s) | 203 |
| PsiI | TTATAA | 2 cut(s) | 120, 939 |
| Psp124BI | GAGCTC | 1 cut(s) | 844 |
| Psp6I | CCWGG | 1 cut(s) | 791 |
| PspGI | CCWGG | 1 cut(s) | 791 |
| PspN4I | GGNNCC | 3 cut(s) | 677, 705, 789 |
| PspPI | GGNCC | 1 cut(s) | 136 |
| PsuI | RGATCY | 4 cut(s) | 128, 355, 675, 787 |
| RsaI | GTAC | 4 cut(s) | 77, 377, 720, 833 |
| RsaNI | GTAC | 4 cut(s) | 76, 376, 719, 832 |
| RseI | CAYNNNNRTG | 1 cut(s) | 265 |
| SacI | GAGCTC | 1 cut(s) | 844 |
| SaqAI | TTAA | 1 cut(s) | 527 |
| SatI | GCNGC | 1 cut(s) | 1041 |
| Sau3AI | GATC | 9 cut(s) | 51, 128, 224, 355, 442, 510, 675, 787, 950 |
| Sau96I | GGNCC | 1 cut(s) | 136 |
| SchI | GAGTC | 5 cut(s) | 40, 173, 204, 283, 631 |
| ScrFI | CCNGG | 1 cut(s) | 793 |
| SduI | GDGCHC | 1 cut(s) | 844 |
| SfaNI | GCATC | 1 cut(s) | 156 |
| SfcI | CTRYAG | 1 cut(s) | 849 |
| SfoI | GGCGCC | 1 cut(s) | 705 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 265 |
| SmlI | CTYRAG | 1 cut(s) | 526 |
| SmoI | CTYRAG | 1 cut(s) | 526 |
| Sse9I | AATT | 6 cut(s) | 114, 228, 247, 438, 710, 741 |
| SseBI | AGGCCT | 1 cut(s) | 388 |
| SsiI | CCGC | 1 cut(s) | 1040 |
| SspDI | GGCGCC | 1 cut(s) | 703 |
| SspI | AATATT | 1 cut(s) | 212 |
| SspMI | CTAG | 5 cut(s) | 185, 369, 554, 612, 903 |
| SstI | GAGCTC | 1 cut(s) | 844 |
| StuI | AGGCCT | 1 cut(s) | 388 |
| StyD4I | CCNGG | 1 cut(s) | 791 |
| StyI | CCWWGG | 2 cut(s) | 132, 359 |
| TaaI | ACNGT | 5 cut(s) | 375, 664, 802, 1052, 1061 |
| TaiI | ACGT | 1 cut(s) | 205 |
| TaqI | TCGA | 2 cut(s) | 927, 1002 |
| TasI | AATT | 6 cut(s) | 114, 228, 247, 438, 710, 741 |
| TatI | WGTACW | 2 cut(s) | 75, 831 |
| TauI | GCSGC | 1 cut(s) | 1043 |
| Tru1I | TTAA | 1 cut(s) | 527 |
| Tru9I | TTAA | 1 cut(s) | 527 |
| TseFI | GTSAC | 3 cut(s) | 43, 1061, 1100 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 1061, 1100 |
| TspDTI | ATGAA | 2 cut(s) | 17, 48 |
| TspGWI | ACGGA | 3 cut(s) | 615, 963, 1080 |
| Vha464I | CTTAAG | 1 cut(s) | 526 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 903 |
| XmiI | GTMKAC | 1 cut(s) | 874 |
| XspI | CTAG | 5 cut(s) | 185, 369, 554, 612, 903 |