ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 251 |
| Acc36I | ACCTGC | 1 cut(s) | 251 |
| AccI | GTMKAC | 1 cut(s) | 471 |
| AclWI | GGATC | 2 cut(s) | 314, 327 |
| AcoI | YGGCCR | 1 cut(s) | 837 |
| AfaI | GTAC | 3 cut(s) | 345, 356, 420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 703, 846 |
| AgsI | TTSAA | 4 cut(s) | 68, 409, 519, 665 |
| AhlI | ACTAGT | 1 cut(s) | 566 |
| AluBI | AGCT | 1 cut(s) | 23 |
| AluI | AGCT | 1 cut(s) | 23 |
| Alw26I | GTCTC | 3 cut(s) | 229, 260, 521 |
| AlwI | GGATC | 2 cut(s) | 314, 327 |
| AoxI | GGCC | 7 cut(s) | 54, 107, 137, 147, 156, 173, 837 |
| ApaI | GGGCCC | 1 cut(s) | 58 |
| ApeKI | GCWGC | 1 cut(s) | 596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 786, 818 |
| AspA2I | CCTAGG | 1 cut(s) | 170 |
| AspLEI | GCGC | 1 cut(s) | 296 |
| AspS9I | GGNCC | 7 cut(s) | 54, 55, 107, 137, 147, 157, 325 |
| AsuC2I | CCSGG | 1 cut(s) | 111 |
| AsuHPI | GGTGA | 2 cut(s) | 275, 734 |
| AvaII | GGWCC | 1 cut(s) | 325 |
| AvrII | CCTAGG | 1 cut(s) | 170 |
| BaeGI | GKGCMC | 1 cut(s) | 58 |
| BalI | TGGCCA | 1 cut(s) | 839 |
| BamHI | GGATCC | 1 cut(s) | 319 |
| BanII | GRGCYC | 1 cut(s) | 58 |
| BbsI | GAAGAC | 2 cut(s) | 156, 284 |
| BbvI | GCAGC | 1 cut(s) | 608 |
| BccI | CCATC | 3 cut(s) | 92, 310, 649 |
| BceAI | ACGGC | 1 cut(s) | 608 |
| BcnI | CCSGG | 1 cut(s) | 111 |
| BcoDI | GTCTC | 3 cut(s) | 229, 260, 521 |
| BcuI | ACTAGT | 1 cut(s) | 566 |
| BfaI | CTAG | 4 cut(s) | 144, 171, 180, 567 |
| BfmI | CTRYAG | 1 cut(s) | 386 |
| BfuAI | ACCTGC | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 155, 836 |
| BisI | GCNGC | 1 cut(s) | 597 |
| BlnI | CCTAGG | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 598 |
| Bme1390I | CCNGG | 1 cut(s) | 111 |
| Bme18I | GGWCC | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 7 cut(s) | 54, 55, 107, 137, 147, 157, 325 |
| BmiI | GGNNCC | 4 cut(s) | 56, 138, 159, 321 |
| BmrFI | CCNGG | 1 cut(s) | 111 |
| BpiI | GAAGAC | 2 cut(s) | 156, 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 630 |
| BpuEI | CTTGAG | 1 cut(s) | 721 |
| BpuMI | CCSGG | 1 cut(s) | 111 |
| BsaI | GGTCTC | 1 cut(s) | 521 |
| BsaJI | CCNNGG | 2 cut(s) | 170, 624 |
| BsaWI | WCCGGW | 1 cut(s) | 322 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 755, 785 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 703, 846 |
| Bse118I | RCCGGY | 1 cut(s) | 696 |
| Bse1I | ACTGG | 2 cut(s) | 274, 840 |
| BseDI | CCNNGG | 2 cut(s) | 170, 624 |
| BseGI | GGATG | 2 cut(s) | 100, 774 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 703, 846 |
| BseMII | CTCAG | 1 cut(s) | 644 |
| BseNI | ACTGG | 2 cut(s) | 274, 840 |
| BseRI | GAGGAG | 1 cut(s) | 539 |
| BseSI | GKGCMC | 1 cut(s) | 58 |
| BseXI | GCAGC | 1 cut(s) | 608 |
| BsgI | GTGCAG | 1 cut(s) | 615 |
| BshFI | GGCC | 7 cut(s) | 56, 109, 139, 149, 158, 175, 839 |
| BsiSI | CCGG | 3 cut(s) | 110, 323, 697 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 703, 846 |
| BsmAI | GTCTC | 3 cut(s) | 229, 260, 521 |
| BsmBI | CGTCTC | 1 cut(s) | 229 |
| BsmI | GAATGC | 1 cut(s) | 455 |
| BsnI | GGCC | 7 cut(s) | 56, 109, 139, 149, 158, 175, 839 |
| Bso31I | GGTCTC | 1 cut(s) | 521 |
| Bsp120I | GGGCCC | 1 cut(s) | 54 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 1 cut(s) | 319 |
| BspANI | GGCC | 7 cut(s) | 56, 109, 139, 149, 158, 175, 839 |
| BspCNI | CTCAG | 1 cut(s) | 643 |
| BspHI | TCATGA | 2 cut(s) | 427, 685 |
| BspLI | GGNNCC | 4 cut(s) | 56, 138, 159, 321 |
| BspMI | ACCTGC | 1 cut(s) | 251 |
| BspPI | GGATC | 2 cut(s) | 314, 327 |
| BspTNI | GGTCTC | 1 cut(s) | 521 |
| BsrFI | RCCGGY | 1 cut(s) | 696 |
| BsrI | ACTGG | 2 cut(s) | 274, 840 |
| BssAI | RCCGGY | 1 cut(s) | 696 |
| BssECI | CCNNGG | 2 cut(s) | 170, 624 |
| BssMI | GATC | 1 cut(s) | 319 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 313 |
| Bst6I | CTCTTC | 2 cut(s) | 386, 429 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 439 |
| BstC8I | GCNNGC | 1 cut(s) | 444 |
| BstDEI | CTNAG | 2 cut(s) | 590, 630 |
| BstDSI | CCRYGG | 1 cut(s) | 624 |
| BstF5I | GGATG | 2 cut(s) | 100, 774 |
| BstHHI | GCGC | 1 cut(s) | 296 |
| BstKTI | GATC | 1 cut(s) | 322 |
| BstMAI | GTCTC | 3 cut(s) | 229, 260, 521 |
| BstMBI | GATC | 1 cut(s) | 319 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 155, 439, 836 |
| BstNSI | RCATGY | 1 cut(s) | 814 |
| BstSCI | CCNGG | 1 cut(s) | 109 |
| BstSFI | CTRYAG | 1 cut(s) | 386 |
| BstSLI | GKGCMC | 1 cut(s) | 58 |
| BstV1I | GCAGC | 1 cut(s) | 608 |
| BstV2I | GAAGAC | 2 cut(s) | 156, 284 |
| BstX2I | RGATCY | 1 cut(s) | 319 |
| BstYI | RGATCY | 1 cut(s) | 319 |
| BsuRI | GGCC | 7 cut(s) | 56, 109, 139, 149, 158, 175, 839 |
| BtgI | CCRYGG | 1 cut(s) | 624 |
| BtsCI | GGATG | 2 cut(s) | 100, 774 |
| BtsI | GCAGTG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 2 cut(s) | 15, 197 |
| BveI | ACCTGC | 1 cut(s) | 251 |
| Cac8I | GCNNGC | 1 cut(s) | 444 |
| CciI | TCATGA | 2 cut(s) | 427, 685 |
| CfoI | GCGC | 1 cut(s) | 296 |
| Cfr10I | RCCGGY | 1 cut(s) | 696 |
| Cfr13I | GGNCC | 7 cut(s) | 54, 55, 107, 137, 147, 157, 325 |
| Csp6I | GTAC | 3 cut(s) | 344, 355, 419 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 698, 733 |
| CviAII | CATG | 6 cut(s) | 428, 479, 686, 703, 811, 815 |
| CviQI | GTAC | 3 cut(s) | 344, 355, 419 |
| DdeI | CTNAG | 2 cut(s) | 590, 630 |
| DpnI | GATC | 1 cut(s) | 321 |
| DpnII | GATC | 1 cut(s) | 319 |
| EaeI | YGGCCR | 1 cut(s) | 837 |
| Eam1104I | CTCTTC | 2 cut(s) | 386, 429 |
| EarI | CTCTTC | 2 cut(s) | 386, 429 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco147I | AGGCCT | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 1 cut(s) | 58 |
| Eco31I | GGTCTC | 1 cut(s) | 521 |
| Eco47I | GGWCC | 1 cut(s) | 325 |
| EcoO109I | RGGNCCY | 3 cut(s) | 54, 137, 157 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 816 |
| EcoT38I | GRGCYC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| Esp3I | CGTCTC | 1 cut(s) | 229 |
| FaeI | CATG | 6 cut(s) | 431, 482, 689, 706, 814, 818 |
| FaiI | YATR | 9 cut(s) | 429, 480, 558, 648, 682, 687, 704, 812, 816 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 124, 156, 330, 362, 596, 628 |
| FatI | CATG | 6 cut(s) | 427, 478, 685, 702, 810, 814 |
| FblI | GTMKAC | 1 cut(s) | 471 |
| Fnu4HI | GCNGC | 1 cut(s) | 597 |
| FokI | GGATG | 2 cut(s) | 107, 781 |
| FriOI | GRGCYC | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 1 cut(s) | 597 |
| FspBI | CTAG | 4 cut(s) | 144, 171, 180, 567 |
| GlaI | GCGC | 1 cut(s) | 295 |
| GluI | GCNGC | 1 cut(s) | 597 |
| HaeIII | GGCC | 7 cut(s) | 56, 109, 139, 149, 158, 175, 839 |
| HapII | CCGG | 3 cut(s) | 110, 323, 697 |
| HhaI | GCGC | 1 cut(s) | 296 |
| Hin1II | CATG | 6 cut(s) | 431, 482, 689, 706, 814, 818 |
| Hin6I | GCGC | 1 cut(s) | 294 |
| HinP1I | GCGC | 1 cut(s) | 294 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 3 cut(s) | 468, 725, 776 |
| HpaII | CCGG | 3 cut(s) | 110, 323, 697 |
| HphI | GGTGA | 2 cut(s) | 275, 734 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 4 cut(s) | 351, 414, 465, 730 |
| Hpy188III | TCNNGA | 4 cut(s) | 374, 428, 613, 686 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| Hpy99I | CGWCG | 1 cut(s) | 243 |
| HpyAV | CCTTC | 7 cut(s) | 126, 148, 150, 186, 237, 242, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 313 |
| HpyCH4V | TGCA | 6 cut(s) | 227, 398, 596, 694, 748, 814 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 155, 439, 836 |
| HpyF3I | CTNAG | 2 cut(s) | 590, 630 |
| Hsp92II | CATG | 6 cut(s) | 431, 482, 689, 706, 814, 818 |
| HspAI | GCGC | 1 cut(s) | 294 |
| Kzo9I | GATC | 1 cut(s) | 319 |
| LmnI | GCTCC | 1 cut(s) | 20 |
| Lsp1109I | GCAGC | 1 cut(s) | 608 |
| MaeI | CTAG | 4 cut(s) | 144, 171, 180, 567 |
| MaeIII | GTNAC | 2 cut(s) | 82, 806 |
| MalI | GATC | 1 cut(s) | 321 |
| MboI | GATC | 1 cut(s) | 319 |
| MboII | GAAGA | 5 cut(s) | 156, 220, 289, 403, 416 |
| MflI | RGATCY | 1 cut(s) | 319 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MlsI | TGGCCA | 1 cut(s) | 839 |
| MluCI | AATT | 5 cut(s) | 399, 434, 543, 584, 710 |
| MluNI | TGGCCA | 1 cut(s) | 839 |
| MlyI | GAGTC | 1 cut(s) | 477 |
| MnlI | CCTC | 8 cut(s) | 10, 28, 345, 370, 432, 517, 759, 785 |
| Mox20I | TGGCCA | 1 cut(s) | 839 |
| Mph1103I | ATGCAT | 1 cut(s) | 816 |
| MscI | TGGCCA | 1 cut(s) | 839 |
| MseI | TTAA | 4 cut(s) | 381, 542, 618, 822 |
| Msp20I | TGGCCA | 1 cut(s) | 839 |
| MspI | CCGG | 3 cut(s) | 110, 323, 697 |
| MspR9I | CCNGG | 1 cut(s) | 111 |
| Mva1269I | GAATGC | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 155, 439, 836 |
| NciI | CCSGG | 1 cut(s) | 111 |
| NdeII | GATC | 1 cut(s) | 319 |
| NlaIII | CATG | 6 cut(s) | 431, 482, 689, 706, 814, 818 |
| NlaIV | GGNNCC | 4 cut(s) | 56, 138, 159, 321 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| NsiI | ATGCAT | 1 cut(s) | 816 |
| NspI | RCATGY | 1 cut(s) | 814 |
| PagI | TCATGA | 2 cut(s) | 427, 685 |
| PaqCI | CACCTGC | 1 cut(s) | 251 |
| PceI | AGGCCT | 1 cut(s) | 175 |
| PctI | GAATGC | 1 cut(s) | 455 |
| PfeI | GAWTC | 2 cut(s) | 725, 776 |
| PkrI | GCNGC | 1 cut(s) | 598 |
| PleI | GAGTC | 1 cut(s) | 476 |
| PpsI | GAGTC | 1 cut(s) | 476 |
| PspN4I | GGNNCC | 4 cut(s) | 56, 138, 159, 321 |
| PspOMI | GGGCCC | 1 cut(s) | 54 |
| PspPI | GGNCC | 7 cut(s) | 54, 55, 107, 137, 147, 157, 325 |
| PsuI | RGATCY | 1 cut(s) | 319 |
| RsaI | GTAC | 3 cut(s) | 345, 356, 420 |
| RsaNI | GTAC | 3 cut(s) | 344, 355, 419 |
| SalI | GTCGAC | 1 cut(s) | 470 |
| SaqAI | TTAA | 4 cut(s) | 381, 542, 618, 822 |
| SatI | GCNGC | 1 cut(s) | 597 |
| Sau3AI | GATC | 1 cut(s) | 319 |
| Sau96I | GGNCC | 7 cut(s) | 54, 55, 107, 137, 147, 157, 325 |
| SchI | GAGTC | 1 cut(s) | 477 |
| ScrFI | CCNGG | 1 cut(s) | 111 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SetI | ASST | 9 cut(s) | 25, 39, 265, 356, 381, 424, 502, 533, 828 |
| SfcI | CTRYAG | 1 cut(s) | 386 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 155 |
| SinI | GGWCC | 1 cut(s) | 325 |
| SmlI | CTYRAG | 1 cut(s) | 736 |
| SmoI | CTYRAG | 1 cut(s) | 736 |
| SpeI | ACTAGT | 1 cut(s) | 566 |
| Sse9I | AATT | 5 cut(s) | 399, 434, 543, 584, 710 |
| SseBI | AGGCCT | 1 cut(s) | 175 |
| SspI | AATATT | 1 cut(s) | 488 |
| SspMI | CTAG | 4 cut(s) | 144, 171, 180, 567 |
| StuI | AGGCCT | 1 cut(s) | 175 |
| StyD4I | CCNGG | 1 cut(s) | 109 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 2 cut(s) | 88, 313 |
| TaqI | TCGA | 1 cut(s) | 471 |
| TasI | AATT | 5 cut(s) | 399, 434, 543, 584, 710 |
| TatI | WGTACW | 1 cut(s) | 343 |
| TfiI | GAWTC | 2 cut(s) | 725, 776 |
| Tru1I | TTAA | 4 cut(s) | 381, 542, 618, 822 |
| Tru9I | TTAA | 4 cut(s) | 381, 542, 618, 822 |
| TscAI | CASTG | 2 cut(s) | 15, 204 |
| TseI | GCWGC | 1 cut(s) | 596 |
| TspDTI | ATGAA | 4 cut(s) | 416, 545, 668, 702 |
| TspGWI | ACGGA | 1 cut(s) | 577 |
| TspRI | CASTG | 2 cut(s) | 15, 204 |
| VpaK11BI | GGWCC | 1 cut(s) | 325 |
| XceI | RCATGY | 1 cut(s) | 814 |
| XmaJI | CCTAGG | 1 cut(s) | 170 |
| XmiI | GTMKAC | 1 cut(s) | 471 |
| XspI | CTAG | 4 cut(s) | 144, 171, 180, 567 |
| Zsp2I | ATGCAT | 1 cut(s) | 816 |