ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 996, 1174 |
| AcsI | RAATTY | 1 cut(s) | 508 |
| AcyI | GRCGYC | 1 cut(s) | 1079 |
| AfaI | GTAC | 4 cut(s) | 87, 963, 1061, 1071 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 410, 1168, 1169 |
| AflII | CTTAAG | 1 cut(s) | 1178 |
| AflIII | ACRYGT | 1 cut(s) | 322 |
| AgsI | TTSAA | 3 cut(s) | 133, 904, 1054 |
| AhlI | ACTAGT | 1 cut(s) | 656 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 90, 122, 718, 750 |
| AluBI | AGCT | 8 cut(s) | 140, 242, 487, 691, 722, 775, 895, 1148 |
| AluI | AGCT | 8 cut(s) | 140, 242, 487, 691, 722, 775, 895, 1148 |
| Alw21I | GWGCWC | 1 cut(s) | 975 |
| Alw26I | GTCTC | 1 cut(s) | 413 |
| ApeKI | GCWGC | 1 cut(s) | 923 |
| ApoI | RAATTY | 1 cut(s) | 508 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 470 |
| AspS9I | GGNCC | 1 cut(s) | 358 |
| AsuHPI | GGTGA | 4 cut(s) | 220, 517, 955, 1106 |
| AsuII | TTCGAA | 1 cut(s) | 115 |
| AvaII | GGWCC | 1 cut(s) | 358 |
| BanII | GRGCYC | 2 cut(s) | 545, 886 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 244, 276 |
| BbsI | GAAGAC | 2 cut(s) | 252, 1042 |
| Bbv12I | GWGCWC | 1 cut(s) | 975 |
| BbvCI | CCTCAGC | 1 cut(s) | 243 |
| BbvI | GCAGC | 1 cut(s) | 910 |
| BccI | CCATC | 2 cut(s) | 7, 1187 |
| BciVI | GTATCC | 1 cut(s) | 1134 |
| BclI | TGATCA | 1 cut(s) | 445 |
| BcoDI | GTCTC | 1 cut(s) | 413 |
| BcuI | ACTAGT | 1 cut(s) | 656 |
| BfaI | CTAG | 2 cut(s) | 615, 657 |
| BfrI | CTTAAG | 1 cut(s) | 1178 |
| BfuI | GTATCC | 1 cut(s) | 1134 |
| BisI | GCNGC | 1 cut(s) | 924 |
| BlsI | GCNGC | 1 cut(s) | 925 |
| Bme18I | GGWCC | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 1 cut(s) | 358 |
| BmiI | GGNNCC | 1 cut(s) | 360 |
| BmrI | ACTGGG | 1 cut(s) | 539 |
| BmsI | GCATC | 2 cut(s) | 574, 653 |
| BmuI | ACTGGG | 1 cut(s) | 539 |
| BpiI | GAAGAC | 2 cut(s) | 252, 1042 |
| BpmI | CTGGAG | 1 cut(s) | 521 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| Bpu14I | TTCGAA | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 305 |
| BsaHI | GRCGYC | 1 cut(s) | 1079 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 65, 95, 446, 476 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 410, 1168, 1169 |
| Bse1I | ACTGG | 2 cut(s) | 545, 662 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 2 cut(s) | 168, 439 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 410, 1168, 1169 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseMII | CTCAG | 3 cut(s) | 234, 627, 960 |
| BseNI | ACTGG | 2 cut(s) | 545, 662 |
| BseRI | GAGGAG | 1 cut(s) | 467 |
| BseXI | GCAGC | 1 cut(s) | 910 |
| BseYI | CCCAGC | 1 cut(s) | 895 |
| BsgI | GTGCAG | 3 cut(s) | 146, 366, 846 |
| BsiHKAI | GWGCWC | 1 cut(s) | 975 |
| BslFI | GGGAC | 1 cut(s) | 324 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 410, 1168, 1169 |
| BsmAI | GTCTC | 1 cut(s) | 413 |
| BsmFI | GGGAC | 1 cut(s) | 324 |
| BsmI | GAATGC | 1 cut(s) | 753 |
| Bsp119I | TTCGAA | 1 cut(s) | 115 |
| Bsp1286I | GDGCHC | 3 cut(s) | 545, 886, 975 |
| Bsp1407I | TGTACA | 1 cut(s) | 1069 |
| Bsp143I | GATC | 2 cut(s) | 445, 1182 |
| Bsp19I | CCATGG | 1 cut(s) | 362 |
| BspCNI | CTCAG | 3 cut(s) | 235, 628, 961 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspLI | GGNNCC | 1 cut(s) | 360 |
| BspT104I | TTCGAA | 1 cut(s) | 115 |
| BspTI | CTTAAG | 1 cut(s) | 1178 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrGI | TGTACA | 1 cut(s) | 1069 |
| BsrI | ACTGG | 2 cut(s) | 545, 662 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 2 cut(s) | 445, 1182 |
| BssNI | GRCGYC | 1 cut(s) | 1079 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst4CI | ACNGT | 1 cut(s) | 629 |
| Bst6I | CTCTTC | 2 cut(s) | 269, 992 |
| BstACI | GRCGYC | 1 cut(s) | 1079 |
| BstAFI | CTTAAG | 1 cut(s) | 1178 |
| BstAUI | TGTACA | 1 cut(s) | 1069 |
| BstBAI | YACGTR | 1 cut(s) | 305 |
| BstBI | TTCGAA | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 4 cut(s) | 66, 702, 874, 893 |
| BstDEI | CTNAG | 6 cut(s) | 243, 314, 530, 636, 969, 1149 |
| BstDSI | CCRYGG | 1 cut(s) | 362 |
| BstEII | GGTNACC | 1 cut(s) | 602 |
| BstF5I | GGATG | 2 cut(s) | 168, 439 |
| BstKTI | GATC | 2 cut(s) | 448, 1185 |
| BstMAI | GTCTC | 1 cut(s) | 413 |
| BstMBI | GATC | 2 cut(s) | 445, 1182 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 146, 493, 697, 897 |
| BstNSI | RCATGY | 3 cut(s) | 326, 704, 876 |
| BstPI | GGTNACC | 1 cut(s) | 602 |
| BstSNI | TACGTA | 1 cut(s) | 305 |
| BstV1I | GCAGC | 1 cut(s) | 910 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 1042 |
| BsuI | GTATCC | 1 cut(s) | 1134 |
| BtgI | CCRYGG | 1 cut(s) | 362 |
| BtsCI | GGATG | 2 cut(s) | 168, 439 |
| BtsIMutI | CAGTG | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 4 cut(s) | 66, 702, 874, 893 |
| CciI | TCATGA | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 1 cut(s) | 358 |
| CseI | GACGC | 2 cut(s) | 799, 1068 |
| Csp6I | GTAC | 4 cut(s) | 86, 962, 1060, 1070 |
| CviQI | GTAC | 4 cut(s) | 86, 962, 1060, 1070 |
| DdeI | CTNAG | 6 cut(s) | 243, 314, 530, 636, 969, 1149 |
| DpnI | GATC | 2 cut(s) | 447, 1184 |
| DpnII | GATC | 2 cut(s) | 445, 1182 |
| DraI | TTTAAA | 1 cut(s) | 672 |
| Eam1104I | CTCTTC | 2 cut(s) | 269, 992 |
| EarI | CTCTTC | 2 cut(s) | 269, 992 |
| Eco105I | TACGTA | 1 cut(s) | 305 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco24I | GRGCYC | 2 cut(s) | 545, 886 |
| Eco47I | GGWCC | 1 cut(s) | 358 |
| Eco91I | GGTNACC | 1 cut(s) | 602 |
| EcoO65I | GGTNACC | 1 cut(s) | 602 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 545, 886 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 90, 122, 129, 161, 741, 773, 884, 916 |
| FaqI | GGGAC | 1 cut(s) | 324 |
| FbaI | TGATCA | 1 cut(s) | 445 |
| FblI | GTMKAC | 2 cut(s) | 996, 1174 |
| Fnu4HI | GCNGC | 1 cut(s) | 924 |
| FokI | GGATG | 2 cut(s) | 155, 446 |
| FriOI | GRGCYC | 2 cut(s) | 545, 886 |
| Fsp4HI | GCNGC | 1 cut(s) | 924 |
| FspBI | CTAG | 2 cut(s) | 615, 657 |
| GluI | GCNGC | 1 cut(s) | 924 |
| GsaI | CCCAGC | 1 cut(s) | 899 |
| GsuI | CTGGAG | 1 cut(s) | 521 |
| HgaI | GACGC | 2 cut(s) | 799, 1068 |
| Hin1I | GRCGYC | 1 cut(s) | 1079 |
| HindIII | AAGCTT | 1 cut(s) | 689 |
| HinfI | GANTC | 2 cut(s) | 165, 709 |
| HphI | GGTGA | 4 cut(s) | 220, 517, 955, 1106 |
| Hpy166II | GTNNAC | 5 cut(s) | 86, 625, 997, 1111, 1175 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 222, 389, 708 |
| Hpy188III | TCNNGA | 4 cut(s) | 449, 500, 569, 1134 |
| Hpy8I | GTNNAC | 5 cut(s) | 86, 625, 997, 1111, 1175 |
| HpyAV | CCTTC | 3 cut(s) | 85, 92, 1131 |
| HpyCH4III | ACNGT | 1 cut(s) | 629 |
| HpyCH4IV | ACGT | 3 cut(s) | 304, 383, 979 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 146, 493, 697, 897 |
| HpyF3I | CTNAG | 6 cut(s) | 243, 314, 530, 636, 969, 1149 |
| HpySE526I | ACGT | 3 cut(s) | 304, 383, 979 |
| Hsp92I | GRCGYC | 1 cut(s) | 1079 |
| Ksp22I | TGATCA | 1 cut(s) | 445 |
| Kzo9I | GATC | 2 cut(s) | 445, 1182 |
| LmnI | GCTCC | 1 cut(s) | 484 |
| LpnPI | CCDG | 9 cut(s) | 353, 467, 485, 547, 558, 675, 810, 838, 881 |
| Lsp1109I | GCAGC | 1 cut(s) | 910 |
| LweI | GCATC | 2 cut(s) | 574, 653 |
| MaeI | CTAG | 2 cut(s) | 615, 657 |
| MaeII | ACGT | 3 cut(s) | 304, 383, 979 |
| MaeIII | GTNAC | 3 cut(s) | 477, 602, 980 |
| MalI | GATC | 2 cut(s) | 447, 1184 |
| MboI | GATC | 2 cut(s) | 445, 1182 |
| MboII | GAAGA | 7 cut(s) | 252, 286, 749, 947, 958, 979, 1042 |
| MhlI | GDGCHC | 3 cut(s) | 545, 886, 975 |
| MluCI | AATT | 4 cut(s) | 296, 508, 618, 954 |
| MmeI | TCCRAC | 1 cut(s) | 140 |
| MnlI | CCTC | 8 cut(s) | 238, 403, 445, 496, 507, 537, 995, 1173 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 470 |
| MseI | TTAA | 6 cut(s) | 594, 671, 746, 912, 1179, 1201 |
| MspCI | CTTAAG | 1 cut(s) | 1178 |
| Mva1269I | GAATGC | 1 cut(s) | 753 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 146, 493, 697, 897 |
| NcoI | CCATGG | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 445, 1182 |
| NlaIV | GGNNCC | 1 cut(s) | 360 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 3 cut(s) | 326, 704, 876 |
| NspV | TTCGAA | 1 cut(s) | 115 |
| PaeI | GCATGC | 2 cut(s) | 704, 876 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PciI | ACATGT | 1 cut(s) | 322 |
| PctI | GAATGC | 1 cut(s) | 753 |
| PdmI | GAANNNNTTC | 1 cut(s) | 470 |
| PfeI | GAWTC | 2 cut(s) | 165, 709 |
| PkrI | GCNGC | 1 cut(s) | 925 |
| Ppu21I | YACGTR | 1 cut(s) | 305 |
| PscI | ACATGT | 1 cut(s) | 322 |
| PspEI | GGTNACC | 1 cut(s) | 602 |
| PspFI | CCCAGC | 1 cut(s) | 895 |
| PspN4I | GGNNCC | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 358 |
| RsaI | GTAC | 4 cut(s) | 87, 963, 1061, 1071 |
| RsaNI | GTAC | 4 cut(s) | 86, 962, 1060, 1070 |
| SaqAI | TTAA | 6 cut(s) | 594, 671, 746, 912, 1179, 1201 |
| SatI | GCNGC | 1 cut(s) | 924 |
| Sau3AI | GATC | 2 cut(s) | 445, 1182 |
| Sau96I | GGNCC | 1 cut(s) | 358 |
| SduI | GDGCHC | 3 cut(s) | 545, 886, 975 |
| SfaNI | GCATC | 2 cut(s) | 574, 653 |
| SfuI | TTCGAA | 1 cut(s) | 115 |
| SinI | GGWCC | 1 cut(s) | 358 |
| SmlI | CTYRAG | 1 cut(s) | 1178 |
| SmoI | CTYRAG | 1 cut(s) | 1178 |
| SnaBI | TACGTA | 1 cut(s) | 305 |
| SpeI | ACTAGT | 1 cut(s) | 656 |
| SphI | GCATGC | 2 cut(s) | 704, 876 |
| Sse9I | AATT | 4 cut(s) | 296, 508, 618, 954 |
| SspI | AATATT | 1 cut(s) | 683 |
| SspMI | CTAG | 2 cut(s) | 615, 657 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 1 cut(s) | 629 |
| TaiI | ACGT | 3 cut(s) | 307, 386, 982 |
| TaqI | TCGA | 3 cut(s) | 115, 724, 1133 |
| TasI | AATT | 4 cut(s) | 296, 508, 618, 954 |
| TatI | WGTACW | 2 cut(s) | 961, 1069 |
| TfiI | GAWTC | 2 cut(s) | 165, 709 |
| Tru1I | TTAA | 6 cut(s) | 594, 671, 746, 912, 1179, 1201 |
| Tru9I | TTAA | 6 cut(s) | 594, 671, 746, 912, 1179, 1201 |
| TscAI | CASTG | 1 cut(s) | 552 |
| TseI | GCWGC | 1 cut(s) | 923 |
| TspDTI | ATGAA | 4 cut(s) | 223, 450, 481, 1142 |
| TspGWI | ACGGA | 1 cut(s) | 371 |
| TspRI | CASTG | 1 cut(s) | 552 |
| Vha464I | CTTAAG | 1 cut(s) | 1178 |
| VpaK11BI | GGWCC | 1 cut(s) | 358 |
| XapI | RAATTY | 1 cut(s) | 508 |
| XceI | RCATGY | 3 cut(s) | 326, 704, 876 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 552 |
| XmiI | GTMKAC | 2 cut(s) | 996, 1174 |
| XmnI | GAANNNNTTC | 1 cut(s) | 470 |
| XspI | CTAG | 2 cut(s) | 615, 657 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |