ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HMA | PF00403 | 31 - 85 | 5.6e-14 | Heavy-metal-associated domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 294 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 82 |
| AccI | GTMKAC | 2 cut(s) | 297, 321 |
| AccII | CGCG | 2 cut(s) | 237, 242 |
| AciI | CCGC | 2 cut(s) | 47, 178 |
| AcoI | YGGCCR | 1 cut(s) | 272 |
| AcsI | RAATTY | 1 cut(s) | 70 |
| AcvI | CACGTG | 1 cut(s) | 389 |
| AcyI | GRCGYC | 1 cut(s) | 291 |
| AfaI | GTAC | 3 cut(s) | 287, 347, 413 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 408 |
| AflIII | ACRYGT | 1 cut(s) | 235 |
| AluBI | AGCT | 3 cut(s) | 193, 396, 443 |
| AluI | AGCT | 3 cut(s) | 193, 396, 443 |
| Alw21I | GWGCWC | 2 cut(s) | 10, 398 |
| AoxI | GGCC | 2 cut(s) | 183, 272 |
| ApeKI | GCWGC | 1 cut(s) | 443 |
| ApoI | RAATTY | 1 cut(s) | 70 |
| AspLEI | GCGC | 1 cut(s) | 244 |
| AsuC2I | CCSGG | 1 cut(s) | 373 |
| AsuHPI | GGTGA | 3 cut(s) | 106, 139, 211 |
| BanII | GRGCYC | 2 cut(s) | 219, 398 |
| BbrPI | CACGTG | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 2 cut(s) | 10, 398 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 2 cut(s) | 94, 369 |
| BceAI | ACGGC | 3 cut(s) | 259, 268, 435 |
| BcnI | CCSGG | 1 cut(s) | 373 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BglII | AGATCT | 1 cut(s) | 267 |
| BisI | GCNGC | 1 cut(s) | 444 |
| BlsI | GCNGC | 1 cut(s) | 445 |
| Bme1390I | CCNGG | 1 cut(s) | 373 |
| BmiI | GGNNCC | 2 cut(s) | 216, 336 |
| BmrFI | CCNGG | 1 cut(s) | 373 |
| BmsI | GCATC | 1 cut(s) | 253 |
| BpuEI | CTTGAG | 1 cut(s) | 25 |
| BpuMI | CCSGG | 1 cut(s) | 373 |
| BsaAI | YACGTR | 3 cut(s) | 211, 349, 389 |
| BsaHI | GRCGYC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 408 |
| Bse118I | RCCGGY | 1 cut(s) | 203 |
| Bse1I | ACTGG | 1 cut(s) | 387 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 408 |
| BseNI | ACTGG | 1 cut(s) | 387 |
| BseRI | GAGGAG | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BseYI | CCCAGC | 1 cut(s) | 439 |
| BsgI | GTGCAG | 1 cut(s) | 433 |
| Bsh1236I | CGCG | 2 cut(s) | 237, 242 |
| BshFI | GGCC | 2 cut(s) | 185, 274 |
| BsiHKAI | GWGCWC | 2 cut(s) | 10, 398 |
| BsiSI | CCGG | 2 cut(s) | 204, 372 |
| BsiWI | CGTACG | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 408 |
| BsnI | GGCC | 2 cut(s) | 185, 274 |
| Bsp1286I | GDGCHC | 3 cut(s) | 10, 219, 398 |
| Bsp143I | GATC | 3 cut(s) | 13, 134, 267 |
| BspACI | CCGC | 2 cut(s) | 47, 178 |
| BspANI | GGCC | 2 cut(s) | 185, 274 |
| BspFNI | CGCG | 2 cut(s) | 237, 242 |
| BspLI | GGNNCC | 2 cut(s) | 216, 336 |
| BsrFI | RCCGGY | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 387 |
| BssAI | RCCGGY | 1 cut(s) | 203 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 3 cut(s) | 13, 134, 267 |
| BssNAI | GTATAC | 1 cut(s) | 322 |
| BssNI | GRCGYC | 1 cut(s) | 291 |
| Bst1107I | GTATAC | 1 cut(s) | 322 |
| Bst4CI | ACNGT | 3 cut(s) | 82, 199, 454 |
| Bst6I | CTCTTC | 1 cut(s) | 251 |
| BstACI | GRCGYC | 1 cut(s) | 291 |
| BstBAI | YACGTR | 3 cut(s) | 211, 349, 389 |
| BstC8I | GCNNGC | 5 cut(s) | 187, 191, 235, 394, 448 |
| BstEII | GGTNACC | 1 cut(s) | 199 |
| BstFNI | CGCG | 2 cut(s) | 237, 242 |
| BstHHI | GCGC | 1 cut(s) | 244 |
| BstKTI | GATC | 3 cut(s) | 16, 137, 270 |
| BstMBI | GATC | 3 cut(s) | 13, 134, 267 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 114, 186, 239, 280 |
| BstPI | GGTNACC | 1 cut(s) | 199 |
| BstSCI | CCNGG | 1 cut(s) | 371 |
| BstUI | CGCG | 2 cut(s) | 237, 242 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 1 cut(s) | 267 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 267 |
| BstZ17I | GTATAC | 1 cut(s) | 322 |
| BsuRI | GGCC | 2 cut(s) | 185, 274 |
| BtsIMutI | CAGTG | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 5 cut(s) | 187, 191, 235, 394, 448 |
| CfoI | GCGC | 1 cut(s) | 244 |
| Cfr10I | RCCGGY | 1 cut(s) | 203 |
| CseI | GACGC | 1 cut(s) | 226 |
| Csp6I | GTAC | 3 cut(s) | 286, 346, 412 |
| CviAII | CATG | 1 cut(s) | 457 |
| CviJI | RGCY | 9 cut(s) | 185, 193, 207, 217, 274, 335, 396, 422, 443 |
| CviKI_1 | RGCY | 9 cut(s) | 185, 193, 207, 217, 274, 335, 396, 422, 443 |
| CviQI | GTAC | 3 cut(s) | 286, 346, 412 |
| DpnI | GATC | 3 cut(s) | 15, 136, 269 |
| DpnII | GATC | 3 cut(s) | 13, 134, 267 |
| EaeI | YGGCCR | 1 cut(s) | 272 |
| Eam1104I | CTCTTC | 1 cut(s) | 251 |
| EarI | CTCTTC | 1 cut(s) | 251 |
| Ecl136II | GAGCTC | 1 cut(s) | 396 |
| Eco24I | GRGCYC | 2 cut(s) | 219, 398 |
| Eco53kI | GAGCTC | 1 cut(s) | 396 |
| Eco72I | CACGTG | 1 cut(s) | 389 |
| Eco91I | GGTNACC | 1 cut(s) | 199 |
| EcoICRI | GAGCTC | 1 cut(s) | 396 |
| EcoO65I | GGTNACC | 1 cut(s) | 199 |
| EcoT38I | GRGCYC | 2 cut(s) | 219, 398 |
| FaeI | CATG | 1 cut(s) | 460 |
| FaiI | YATR | 5 cut(s) | 173, 279, 307, 322, 458 |
| FatI | CATG | 1 cut(s) | 456 |
| FauI | CCCGC | 1 cut(s) | 40 |
| FblI | GTMKAC | 2 cut(s) | 297, 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 444 |
| FriOI | GRGCYC | 2 cut(s) | 219, 398 |
| Fsp4HI | GCNGC | 1 cut(s) | 444 |
| FspBI | CTAG | 1 cut(s) | 11 |
| GlaI | GCGC | 1 cut(s) | 243 |
| GluI | GCNGC | 1 cut(s) | 444 |
| GsaI | CCCAGC | 1 cut(s) | 443 |
| HaeIII | GGCC | 2 cut(s) | 185, 274 |
| HapII | CCGG | 2 cut(s) | 204, 372 |
| HgaI | GACGC | 1 cut(s) | 226 |
| HhaI | GCGC | 1 cut(s) | 244 |
| Hin1I | GRCGYC | 1 cut(s) | 291 |
| Hin1II | CATG | 1 cut(s) | 460 |
| Hin6I | GCGC | 1 cut(s) | 242 |
| HinP1I | GCGC | 1 cut(s) | 242 |
| HincII | GTYRAC | 1 cut(s) | 298 |
| HindII | GTYRAC | 1 cut(s) | 298 |
| HpaII | CCGG | 2 cut(s) | 204, 372 |
| HphI | GGTGA | 3 cut(s) | 106, 139, 211 |
| Hpy166II | GTNNAC | 4 cut(s) | 169, 298, 322, 414 |
| Hpy188I | TCNGA | 2 cut(s) | 249, 366 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 76 |
| Hpy8I | GTNNAC | 4 cut(s) | 169, 298, 322, 414 |
| Hpy99I | CGWCG | 5 cut(s) | 242, 293, 296, 299, 343 |
| HpyAV | CCTTC | 5 cut(s) | 104, 118, 145, 217, 325 |
| HpyCH4III | ACNGT | 3 cut(s) | 82, 199, 454 |
| HpyCH4IV | ACGT | 4 cut(s) | 210, 291, 348, 388 |
| HpyCH4V | TGCA | 1 cut(s) | 450 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 114, 186, 239, 280 |
| HpySE526I | ACGT | 4 cut(s) | 210, 291, 348, 388 |
| Hsp92I | GRCGYC | 1 cut(s) | 291 |
| Hsp92II | CATG | 1 cut(s) | 460 |
| HspAI | GCGC | 1 cut(s) | 242 |
| Kzo9I | GATC | 3 cut(s) | 13, 134, 267 |
| LmnI | GCTCC | 3 cut(s) | 214, 340, 401 |
| LpnPI | CCDG | 8 cut(s) | 89, 199, 217, 256, 299, 368, 385, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| LweI | GCATC | 1 cut(s) | 253 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MaeII | ACGT | 4 cut(s) | 210, 291, 348, 388 |
| MaeIII | GTNAC | 2 cut(s) | 159, 199 |
| MalI | GATC | 3 cut(s) | 15, 136, 269 |
| MboI | GATC | 3 cut(s) | 13, 134, 267 |
| MboII | GAAGA | 2 cut(s) | 109, 268 |
| MflI | RGATCY | 1 cut(s) | 267 |
| MhlI | GDGCHC | 3 cut(s) | 10, 219, 398 |
| MluCI | AATT | 1 cut(s) | 70 |
| MluI | ACGCGT | 1 cut(s) | 235 |
| MnlI | CCTC | 6 cut(s) | 114, 123, 136, 252, 347, 371 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 455 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MspI | CCGG | 2 cut(s) | 204, 372 |
| MspR9I | CCNGG | 1 cut(s) | 373 |
| MvnI | CGCG | 2 cut(s) | 237, 242 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 114, 186, 239, 280 |
| NciI | CCSGG | 1 cut(s) | 373 |
| NdeII | GATC | 3 cut(s) | 13, 134, 267 |
| NlaIII | CATG | 1 cut(s) | 460 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 336 |
| NmuCI | GTSAC | 2 cut(s) | 159, 199 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 294, 354 |
| Pfl23II | CGTACG | 1 cut(s) | 285 |
| PflFI | GACNNNGTC | 1 cut(s) | 293 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 82 |
| PkrI | GCNGC | 1 cut(s) | 445 |
| PmaCI | CACGTG | 1 cut(s) | 389 |
| PmlI | CACGTG | 1 cut(s) | 389 |
| Ppu21I | YACGTR | 3 cut(s) | 211, 349, 389 |
| Psp124BI | GAGCTC | 1 cut(s) | 398 |
| PspCI | CACGTG | 1 cut(s) | 389 |
| PspEI | GGTNACC | 1 cut(s) | 199 |
| PspFI | CCCAGC | 1 cut(s) | 439 |
| PspLI | CGTACG | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 336 |
| PsuI | RGATCY | 1 cut(s) | 267 |
| PsyI | GACNNNGTC | 1 cut(s) | 293 |
| PvuII | CAGCTG | 1 cut(s) | 443 |
| RsaI | GTAC | 3 cut(s) | 287, 347, 413 |
| RsaNI | GTAC | 3 cut(s) | 286, 346, 412 |
| RseI | CAYNNNNRTG | 1 cut(s) | 455 |
| SacI | GAGCTC | 1 cut(s) | 398 |
| SalI | GTCGAC | 1 cut(s) | 296 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 444 |
| Sau3AI | GATC | 3 cut(s) | 13, 134, 267 |
| ScrFI | CCNGG | 1 cut(s) | 373 |
| SduI | GDGCHC | 3 cut(s) | 10, 219, 398 |
| SfaNI | GCATC | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 455 |
| SmlI | CTYRAG | 1 cut(s) | 40 |
| SmoI | CTYRAG | 1 cut(s) | 40 |
| Sse9I | AATT | 1 cut(s) | 70 |
| SsiI | CCGC | 2 cut(s) | 47, 178 |
| SspMI | CTAG | 1 cut(s) | 11 |
| SstI | GAGCTC | 1 cut(s) | 398 |
| StyD4I | CCNGG | 1 cut(s) | 371 |
| TaaI | ACNGT | 3 cut(s) | 82, 199, 454 |
| TaiI | ACGT | 4 cut(s) | 213, 294, 351, 391 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TasI | AATT | 1 cut(s) | 70 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 2 cut(s) | 159, 199 |
| TseI | GCWGC | 1 cut(s) | 443 |
| Tsp45I | GTSAC | 2 cut(s) | 159, 199 |
| TspDTI | ATGAA | 2 cut(s) | 164, 447 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspRI | CASTG | 1 cut(s) | 433 |
| Tth111I | GACNNNGTC | 1 cut(s) | 293 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 82 |
| XapI | RAATTY | 1 cut(s) | 70 |
| XbaI | TCTAGA | 1 cut(s) | 10 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 226 |
| XmiI | GTMKAC | 2 cut(s) | 297, 321 |
| XspI | CTAG | 1 cut(s) | 11 |
| ZraI | GACGTC | 1 cut(s) | 292 |