Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 129 |
| Acc65I | GGTACC | 3 cut(s) | 6, 291, 468 |
| AccB1I | GGYRCC | 4 cut(s) | 6, 55, 291, 468 |
| AccBSI | CCGCTC | 1 cut(s) | 1204 |
| AccI | GTMKAC | 2 cut(s) | 1045, 1221 |
| AciI | CCGC | 6 cut(s) | 188, 365, 607, 1139, 1189, 1204 |
| AclI | AACGTT | 2 cut(s) | 279, 456 |
| AclWI | GGATC | 1 cut(s) | 41 |
| AcsI | RAATTY | 1 cut(s) | 968 |
| AcyI | GRCGYC | 1 cut(s) | 126 |
| AfaI | GTAC | 4 cut(s) | 8, 293, 470, 825 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 94, 988, 1040 |
| AflIII | ACRYGT | 2 cut(s) | 715, 847 |
| AgsI | TTSAA | 7 cut(s) | 316, 493, 805, 926, 944, 1179, 1252 |
| AjnI | CCWGG | 3 cut(s) | 9, 632, 900 |
| AluBI | AGCT | 4 cut(s) | 69, 562, 641, 794 |
| AluI | AGCT | 4 cut(s) | 69, 562, 641, 794 |
| AlwI | GGATC | 1 cut(s) | 41 |
| AoxI | GGCC | 2 cut(s) | 735, 1010 |
| ApeKI | GCWGC | 1 cut(s) | 791 |
| ApoI | RAATTY | 1 cut(s) | 968 |
| Asp718I | GGTACC | 3 cut(s) | 6, 291, 468 |
| AspS9I | GGNCC | 3 cut(s) | 736, 761, 1011 |
| AsuHPI | GGTGA | 6 cut(s) | 29, 182, 205, 359, 382, 854 |
| AvaII | GGWCC | 1 cut(s) | 761 |
| BaeGI | GKGCMC | 1 cut(s) | 60 |
| BanI | GGYRCC | 4 cut(s) | 6, 55, 291, 468 |
| BbsI | GAAGAC | 3 cut(s) | 392, 533, 1201 |
| BbvI | GCAGC | 1 cut(s) | 803 |
| BccI | CCATC | 6 cut(s) | 14, 313, 490, 990, 1058, 1117 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 372, 406 |
| BciT130I | CCWGG | 3 cut(s) | 11, 634, 902 |
| BfaI | CTAG | 2 cut(s) | 795, 996 |
| BisI | GCNGC | 2 cut(s) | 792, 1140 |
| BlsI | GCNGC | 2 cut(s) | 793, 1141 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 634, 902 |
| Bme18I | GGWCC | 1 cut(s) | 761 |
| BmgT120I | GGNCC | 3 cut(s) | 736, 761, 1011 |
| BmiI | GGNNCC | 4 cut(s) | 8, 57, 293, 470 |
| BmrFI | CCNGG | 3 cut(s) | 11, 634, 902 |
| BmrI | ACTGGG | 1 cut(s) | 717 |
| BmsI | GCATC | 7 cut(s) | 124, 175, 215, 352, 392, 610, 1108 |
| BmuI | ACTGGG | 1 cut(s) | 717 |
| BpiI | GAAGAC | 3 cut(s) | 392, 533, 1201 |
| BpmI | CTGGAG | 1 cut(s) | 725 |
| Bsa29I | ATCGAT | 1 cut(s) | 1062 |
| BsaAI | YACGTR | 1 cut(s) | 653 |
| BsaHI | GRCGYC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 5 cut(s) | 50, 584, 987, 1014, 1227 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 529, 559, 565, 595, 1095, 1125 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 94, 988, 1040 |
| Bse1I | ACTGG | 3 cut(s) | 712, 742, 831 |
| BseBI | CCWGG | 3 cut(s) | 11, 634, 902 |
| BseCI | ATCGAT | 1 cut(s) | 1062 |
| BseDI | CCNNGG | 5 cut(s) | 50, 584, 987, 1014, 1227 |
| BseGI | GGATG | 3 cut(s) | 190, 367, 982 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 94, 988, 1040 |
| BseNI | ACTGG | 3 cut(s) | 712, 742, 831 |
| BseSI | GKGCMC | 1 cut(s) | 60 |
| BseXI | GCAGC | 1 cut(s) | 803 |
| BseYI | CCCAGC | 1 cut(s) | 530 |
| BsgI | GTGCAG | 1 cut(s) | 1218 |
| BshFI | GGCC | 2 cut(s) | 737, 1012 |
| BshNI | GGYRCC | 4 cut(s) | 6, 55, 291, 468 |
| BshVI | ATCGAT | 1 cut(s) | 1062 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 94, 988, 1040 |
| BsmI | GAATGC | 1 cut(s) | 222 |
| BsnI | GGCC | 2 cut(s) | 737, 1012 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| BspACI | CCGC | 6 cut(s) | 188, 365, 607, 1139, 1189, 1204 |
| BspANI | GGCC | 2 cut(s) | 737, 1012 |
| BspDI | ATCGAT | 1 cut(s) | 1062 |
| BspLI | GGNNCC | 4 cut(s) | 8, 57, 293, 470 |
| BspPI | GGATC | 1 cut(s) | 41 |
| BspT107I | GGYRCC | 4 cut(s) | 6, 55, 291, 468 |
| BsrBI | CCGCTC | 1 cut(s) | 1204 |
| BsrI | ACTGG | 3 cut(s) | 712, 742, 831 |
| BssECI | CCNNGG | 5 cut(s) | 50, 584, 987, 1014, 1227 |
| BssMI | GATC | 1 cut(s) | 46 |
| BssNAI | GTATAC | 1 cut(s) | 1222 |
| BssNI | GRCGYC | 1 cut(s) | 126 |
| BssT1I | CCWWGG | 4 cut(s) | 50, 584, 987, 1227 |
| Bst1107I | GTATAC | 1 cut(s) | 1222 |
| Bst2UI | CCWGG | 3 cut(s) | 11, 634, 902 |
| Bst4CI | ACNGT | 2 cut(s) | 577, 1088 |
| Bst6I | CTCTTC | 1 cut(s) | 1001 |
| BstACI | GRCGYC | 1 cut(s) | 126 |
| BstBAI | YACGTR | 1 cut(s) | 653 |
| BstC8I | GCNNGC | 3 cut(s) | 953, 1164, 1197 |
| BstDSI | CCRYGG | 1 cut(s) | 1014 |
| BstF5I | GGATG | 3 cut(s) | 190, 367, 982 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 613, 1145, 1172, 1201 |
| BstNI | CCWGG | 3 cut(s) | 11, 634, 902 |
| BstNSI | RCATGY | 3 cut(s) | 719, 851, 1166 |
| BstSCI | CCNGG | 3 cut(s) | 9, 632, 900 |
| BstSLI | GKGCMC | 1 cut(s) | 60 |
| BstV1I | GCAGC | 1 cut(s) | 803 |
| BstV2I | GAAGAC | 3 cut(s) | 392, 533, 1201 |
| BstZ17I | GTATAC | 1 cut(s) | 1222 |
| Bsu15I | ATCGAT | 1 cut(s) | 1062 |
| BsuRI | GGCC | 2 cut(s) | 737, 1012 |
| BsuTUI | ATCGAT | 1 cut(s) | 1062 |
| BtgI | CCRYGG | 1 cut(s) | 1014 |
| BtgZI | GCGATG | 1 cut(s) | 1136 |
| BtsCI | GGATG | 3 cut(s) | 190, 367, 982 |
| BtsIMutI | CAGTG | 1 cut(s) | 749 |
| Cac8I | GCNNGC | 3 cut(s) | 953, 1164, 1197 |
| Cfr13I | GGNCC | 3 cut(s) | 736, 761, 1011 |
| ClaI | ATCGAT | 1 cut(s) | 1062 |
| CsiI | ACCWGGT | 3 cut(s) | 9, 632, 900 |
| Csp6I | GTAC | 4 cut(s) | 7, 292, 469, 824 |
| CviQI | GTAC | 4 cut(s) | 7, 292, 469, 824 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| DraI | TTTAAA | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 1 cut(s) | 1001 |
| EarI | CTCTTC | 1 cut(s) | 1001 |
| Eco130I | CCWWGG | 4 cut(s) | 50, 584, 987, 1227 |
| Eco47I | GGWCC | 1 cut(s) | 761 |
| EcoO109I | RGGNCCY | 1 cut(s) | 736 |
| EcoRI | GAATTC | 1 cut(s) | 968 |
| EcoRII | CCWGG | 3 cut(s) | 9, 632, 900 |
| EcoT14I | CCWWGG | 4 cut(s) | 50, 584, 987, 1227 |
| EcoT22I | ATGCAT | 2 cut(s) | 669, 936 |
| ErhI | CCWWGG | 4 cut(s) | 50, 584, 987, 1227 |
| FauI | CCCGC | 1 cut(s) | 1197 |
| FauNDI | CATATG | 1 cut(s) | 936 |
| FblI | GTMKAC | 2 cut(s) | 1045, 1221 |
| Fnu4HI | GCNGC | 2 cut(s) | 792, 1140 |
| FokI | GGATG | 3 cut(s) | 197, 374, 969 |
| Fsp4HI | GCNGC | 2 cut(s) | 792, 1140 |
| FspBI | CTAG | 2 cut(s) | 795, 996 |
| GluI | GCNGC | 2 cut(s) | 792, 1140 |
| GsaI | CCCAGC | 1 cut(s) | 534 |
| GsuI | CTGGAG | 1 cut(s) | 725 |
| HaeIII | GGCC | 2 cut(s) | 737, 1012 |
| Hin1I | GRCGYC | 1 cut(s) | 126 |
| HinfI | GANTC | 3 cut(s) | 397, 538, 784 |
| HphI | GGTGA | 6 cut(s) | 29, 182, 205, 359, 382, 854 |
| Hpy166II | GTNNAC | 4 cut(s) | 845, 1046, 1081, 1222 |
| Hpy188I | TCNGA | 4 cut(s) | 231, 408, 1038, 1115 |
| Hpy188III | TCNNGA | 1 cut(s) | 565 |
| Hpy8I | GTNNAC | 4 cut(s) | 845, 1046, 1081, 1222 |
| Hpy99I | CGWCG | 2 cut(s) | 343, 520 |
| HpyAV | CCTTC | 3 cut(s) | 91, 92, 904 |
| HpyCH4III | ACNGT | 2 cut(s) | 577, 1088 |
| HpyCH4IV | ACGT | 8 cut(s) | 126, 279, 338, 456, 515, 652, 672, 831 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 613, 1145, 1172, 1201 |
| HpySE526I | ACGT | 8 cut(s) | 126, 279, 338, 456, 515, 652, 672, 831 |
| Hsp92I | GRCGYC | 1 cut(s) | 126 |
| KpnI | GGTACC | 3 cut(s) | 10, 295, 472 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| Lsp1109I | GCAGC | 1 cut(s) | 803 |
| LweI | GCATC | 7 cut(s) | 124, 175, 215, 352, 392, 610, 1108 |
| MabI | ACCWGGT | 3 cut(s) | 9, 632, 900 |
| MaeI | CTAG | 2 cut(s) | 795, 996 |
| MaeII | ACGT | 8 cut(s) | 126, 279, 338, 456, 515, 652, 672, 831 |
| MaeIII | GTNAC | 2 cut(s) | 118, 609 |
| MalI | GATC | 1 cut(s) | 48 |
| MbiI | CCGCTC | 1 cut(s) | 1204 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 9 cut(s) | 152, 328, 392, 505, 533, 1015, 1018, 1201, 1204 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MlyI | GAGTC | 2 cut(s) | 406, 547 |
| MmeI | TCCRAC | 3 cut(s) | 942, 1072, 1213 |
| Mph1103I | ATGCAT | 2 cut(s) | 669, 936 |
| MseI | TTAA | 8 cut(s) | 75, 155, 306, 483, 675, 723, 773, 1074 |
| MslI | CAYNNNNRTG | 2 cut(s) | 300, 477 |
| MspR9I | CCNGG | 3 cut(s) | 11, 634, 902 |
| Mva1269I | GAATGC | 1 cut(s) | 222 |
| MvaI | CCWGG | 3 cut(s) | 11, 634, 902 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 613, 1145, 1172, 1201 |
| NdeI | CATATG | 1 cut(s) | 936 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIV | GGNNCC | 4 cut(s) | 8, 57, 293, 470 |
| NmeAIII | GCCGAG | 1 cut(s) | 1151 |
| NsiI | ATGCAT | 2 cut(s) | 669, 936 |
| NspI | RCATGY | 3 cut(s) | 719, 851, 1166 |
| PaeI | GCATGC | 1 cut(s) | 1166 |
| PciI | ACATGT | 2 cut(s) | 715, 847 |
| PctI | GAATGC | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 784 |
| PkrI | GCNGC | 2 cut(s) | 793, 1141 |
| PleI | GAGTC | 2 cut(s) | 405, 546 |
| PpsI | GAGTC | 2 cut(s) | 405, 546 |
| Ppu21I | YACGTR | 1 cut(s) | 653 |
| PscI | ACATGT | 2 cut(s) | 715, 847 |
| Psp1406I | AACGTT | 2 cut(s) | 279, 456 |
| Psp6I | CCWGG | 3 cut(s) | 9, 632, 900 |
| PspFI | CCCAGC | 1 cut(s) | 530 |
| PspGI | CCWGG | 3 cut(s) | 9, 632, 900 |
| PspN4I | GGNNCC | 4 cut(s) | 8, 57, 293, 470 |
| PspPI | GGNCC | 3 cut(s) | 736, 761, 1011 |
| RsaI | GTAC | 4 cut(s) | 8, 293, 470, 825 |
| RsaNI | GTAC | 4 cut(s) | 7, 292, 469, 824 |
| RseI | CAYNNNNRTG | 2 cut(s) | 300, 477 |
| SaqAI | TTAA | 8 cut(s) | 75, 155, 306, 483, 675, 723, 773, 1074 |
| SatI | GCNGC | 2 cut(s) | 792, 1140 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| Sau96I | GGNCC | 3 cut(s) | 736, 761, 1011 |
| SchI | GAGTC | 2 cut(s) | 406, 547 |
| ScrFI | CCNGG | 3 cut(s) | 11, 634, 902 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SexAI | ACCWGGT | 3 cut(s) | 9, 632, 900 |
| SfaNI | GCATC | 7 cut(s) | 124, 175, 215, 352, 392, 610, 1108 |
| SinI | GGWCC | 1 cut(s) | 761 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 300, 477 |
| SphI | GCATGC | 1 cut(s) | 1166 |
| SsiI | CCGC | 6 cut(s) | 188, 365, 607, 1139, 1189, 1204 |
| SspMI | CTAG | 2 cut(s) | 795, 996 |
| StyD4I | CCNGG | 3 cut(s) | 9, 632, 900 |
| StyI | CCWWGG | 4 cut(s) | 50, 584, 987, 1227 |
| TaaI | ACNGT | 2 cut(s) | 577, 1088 |
| TaiI | ACGT | 8 cut(s) | 129, 282, 341, 459, 518, 655, 675, 834 |
| TaqI | TCGA | 1 cut(s) | 1062 |
| TatI | WGTACW | 1 cut(s) | 823 |
| TauI | GCSGC | 1 cut(s) | 1142 |
| TfiI | GAWTC | 1 cut(s) | 784 |
| Tru1I | TTAA | 8 cut(s) | 75, 155, 306, 483, 675, 723, 773, 1074 |
| Tru9I | TTAA | 8 cut(s) | 75, 155, 306, 483, 675, 723, 773, 1074 |
| TscAI | CASTG | 1 cut(s) | 749 |
| TseI | GCWGC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 2 cut(s) | 169, 346 |
| TspGWI | ACGGA | 5 cut(s) | 137, 204, 248, 425, 1252 |
| TspRI | CASTG | 1 cut(s) | 749 |
| VpaK11BI | GGWCC | 1 cut(s) | 761 |
| XapI | RAATTY | 1 cut(s) | 968 |
| XceI | RCATGY | 3 cut(s) | 719, 851, 1166 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 17 |
| XmiI | GTMKAC | 2 cut(s) | 1045, 1221 |
| XspI | CTAG | 2 cut(s) | 795, 996 |
| ZraI | GACGTC | 1 cut(s) | 127 |
| Zsp2I | ATGCAT | 2 cut(s) | 669, 936 |