Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 745 |
| AccII | CGCG | 1 cut(s) | 628 |
| AciI | CCGC | 5 cut(s) | 71, 534, 842, 932, 1026 |
| AclWI | GGATC | 1 cut(s) | 984 |
| AcsI | RAATTY | 3 cut(s) | 169, 597, 728 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 100, 702 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 995, 1027 |
| AluBI | AGCT | 4 cut(s) | 98, 674, 806, 868 |
| AluI | AGCT | 4 cut(s) | 98, 674, 806, 868 |
| Alw21I | GWGCWC | 1 cut(s) | 870 |
| Alw26I | GTCTC | 1 cut(s) | 814 |
| AlwI | GGATC | 1 cut(s) | 984 |
| Ama87I | CYCGRG | 1 cut(s) | 832 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 2 cut(s) | 839, 929 |
| ApoI | RAATTY | 3 cut(s) | 169, 597, 728 |
| AspLEI | GCGC | 1 cut(s) | 628 |
| AspS9I | GGNCC | 1 cut(s) | 384 |
| AsuC2I | CCSGG | 1 cut(s) | 388 |
| AsuHPI | GGTGA | 2 cut(s) | 64, 652 |
| AvaI | CYCGRG | 1 cut(s) | 832 |
| BanII | GRGCYC | 1 cut(s) | 870 |
| BauI | CACGAG | 1 cut(s) | 700 |
| BbsI | GAAGAC | 1 cut(s) | 275 |
| Bbv12I | GWGCWC | 1 cut(s) | 870 |
| BbvI | GCAGC | 2 cut(s) | 851, 941 |
| BccI | CCATC | 2 cut(s) | 957, 998 |
| BceAI | ACGGC | 1 cut(s) | 372 |
| BclI | TGATCA | 2 cut(s) | 3, 402 |
| BcnI | CCSGG | 1 cut(s) | 388 |
| BcoDI | GTCTC | 1 cut(s) | 814 |
| BfaI | CTAG | 2 cut(s) | 473, 723 |
| BfuAI | ACCTGC | 1 cut(s) | 745 |
| BisI | GCNGC | 2 cut(s) | 840, 930 |
| BlsI | GCNGC | 2 cut(s) | 841, 931 |
| Bme1390I | CCNGG | 1 cut(s) | 388 |
| BmeT110I | CYCGRG | 1 cut(s) | 832 |
| BmgT120I | GGNCC | 1 cut(s) | 384 |
| BmiI | GGNNCC | 2 cut(s) | 13, 385 |
| BmrFI | CCNGG | 1 cut(s) | 388 |
| BmsI | GCATC | 2 cut(s) | 466, 720 |
| BpiI | GAAGAC | 1 cut(s) | 275 |
| BpuMI | CCSGG | 1 cut(s) | 388 |
| BsaAI | YACGTR | 2 cut(s) | 221, 295 |
| BsaI | GGTCTC | 1 cut(s) | 814 |
| BsaWI | WCCGGW | 1 cut(s) | 233 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 521, 551 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 100, 702 |
| Bse1I | ACTGG | 1 cut(s) | 497 |
| Bse3DI | GCAATG | 1 cut(s) | 579 |
| BseGI | GGATG | 2 cut(s) | 973, 1009 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 100, 702 |
| BseMI | GCAATG | 1 cut(s) | 579 |
| BseMII | CTCAG | 1 cut(s) | 801 |
| BseNI | ACTGG | 1 cut(s) | 497 |
| BseRI | GAGGAG | 2 cut(s) | 542, 938 |
| BseXI | GCAGC | 2 cut(s) | 851, 941 |
| BsgI | GTGCAG | 1 cut(s) | 858 |
| Bsh1236I | CGCG | 1 cut(s) | 628 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 870 |
| BsiHKCI | CYCGRG | 1 cut(s) | 832 |
| BsiSI | CCGG | 2 cut(s) | 234, 387 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 100, 702 |
| BsmAI | GTCTC | 1 cut(s) | 814 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bso31I | GGTCTC | 1 cut(s) | 814 |
| BsoBI | CYCGRG | 1 cut(s) | 832 |
| Bsp1286I | GDGCHC | 1 cut(s) | 870 |
| Bsp143I | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| BspACI | CCGC | 5 cut(s) | 71, 534, 842, 932, 1026 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 1 cut(s) | 800 |
| BspFNI | CGCG | 1 cut(s) | 628 |
| BspLI | GGNNCC | 2 cut(s) | 13, 385 |
| BspMI | ACCTGC | 1 cut(s) | 745 |
| BspPI | GGATC | 1 cut(s) | 984 |
| BspTNI | GGTCTC | 1 cut(s) | 814 |
| BsrDI | GCAATG | 1 cut(s) | 579 |
| BsrI | ACTGG | 1 cut(s) | 497 |
| BssMI | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| BssSI | CACGAG | 1 cut(s) | 700 |
| Bst2BI | CACGAG | 1 cut(s) | 700 |
| Bst4CI | ACNGT | 1 cut(s) | 746 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 578 |
| BstBAI | YACGTR | 2 cut(s) | 221, 295 |
| BstC8I | GCNNGC | 2 cut(s) | 579, 588 |
| BstDEI | CTNAG | 3 cut(s) | 177, 345, 787 |
| BstF5I | GGATG | 2 cut(s) | 973, 1009 |
| BstFNI | CGCG | 1 cut(s) | 628 |
| BstHHI | GCGC | 1 cut(s) | 628 |
| BstKTI | GATC | 6 cut(s) | 6, 217, 405, 433, 511, 979 |
| BstMAI | GTCTC | 1 cut(s) | 814 |
| BstMBI | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 540, 578, 583, 587 |
| BstNSI | RCATGY | 2 cut(s) | 212, 686 |
| BstSCI | CCNGG | 1 cut(s) | 386 |
| BstSNI | TACGTA | 2 cut(s) | 221, 295 |
| BstUI | CGCG | 1 cut(s) | 628 |
| BstV1I | GCAGC | 2 cut(s) | 851, 941 |
| BstV2I | GAAGAC | 1 cut(s) | 275 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtsCI | GGATG | 2 cut(s) | 973, 1009 |
| BtsIMutI | CAGTG | 1 cut(s) | 490 |
| BveI | ACCTGC | 1 cut(s) | 745 |
| Cac8I | GCNNGC | 2 cut(s) | 579, 588 |
| CfoI | GCGC | 1 cut(s) | 628 |
| Cfr13I | GGNCC | 1 cut(s) | 384 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviAII | CATG | 5 cut(s) | 209, 266, 591, 683, 871 |
| CviJI | RGCY | 9 cut(s) | 98, 340, 359, 386, 409, 543, 674, 806, 868 |
| CviKI_1 | RGCY | 9 cut(s) | 98, 340, 359, 386, 409, 543, 674, 806, 868 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 3 cut(s) | 177, 345, 787 |
| DpnI | GATC | 6 cut(s) | 5, 216, 404, 432, 510, 978 |
| DpnII | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| DraI | TTTAAA | 1 cut(s) | 603 |
| Ecl136II | GAGCTC | 1 cut(s) | 868 |
| Eco105I | TACGTA | 2 cut(s) | 221, 295 |
| Eco24I | GRGCYC | 1 cut(s) | 870 |
| Eco31I | GGTCTC | 1 cut(s) | 814 |
| Eco53kI | GAGCTC | 1 cut(s) | 868 |
| Eco88I | CYCGRG | 1 cut(s) | 832 |
| EcoICRI | GAGCTC | 1 cut(s) | 868 |
| EcoT38I | GRGCYC | 1 cut(s) | 870 |
| FaeI | CATG | 5 cut(s) | 212, 269, 594, 686, 874 |
| FatI | CATG | 5 cut(s) | 208, 265, 590, 682, 870 |
| FauI | CCCGC | 2 cut(s) | 527, 835 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| FbaI | TGATCA | 2 cut(s) | 3, 402 |
| Fnu4HI | GCNGC | 2 cut(s) | 840, 930 |
| FokI | GGATG | 2 cut(s) | 980, 1016 |
| FriOI | GRGCYC | 1 cut(s) | 870 |
| Fsp4HI | GCNGC | 2 cut(s) | 840, 930 |
| FspBI | CTAG | 2 cut(s) | 473, 723 |
| GlaI | GCGC | 1 cut(s) | 627 |
| GluI | GCNGC | 2 cut(s) | 840, 930 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HapII | CCGG | 2 cut(s) | 234, 387 |
| HhaI | GCGC | 1 cut(s) | 628 |
| Hin1II | CATG | 5 cut(s) | 212, 269, 594, 686, 874 |
| Hin6I | GCGC | 1 cut(s) | 626 |
| HinP1I | GCGC | 1 cut(s) | 626 |
| HindIII | AAGCTT | 2 cut(s) | 96, 672 |
| HinfI | GANTC | 6 cut(s) | 107, 260, 607, 655, 949, 958 |
| HpaII | CCGG | 2 cut(s) | 234, 387 |
| HphI | GGTGA | 2 cut(s) | 64, 652 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 3 cut(s) | 654, 790, 922 |
| Hpy188III | TCNNGA | 4 cut(s) | 434, 473, 997, 1021 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| HpyAV | CCTTC | 7 cut(s) | 385, 621, 702, 763, 842, 967, 994 |
| HpyCH4III | ACNGT | 1 cut(s) | 746 |
| HpyCH4IV | ACGT | 2 cut(s) | 220, 294 |
| HpyCH4V | TGCA | 7 cut(s) | 44, 208, 269, 479, 581, 736, 839 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 540, 578, 583, 587 |
| HpyF3I | CTNAG | 3 cut(s) | 177, 345, 787 |
| HpySE526I | ACGT | 2 cut(s) | 220, 294 |
| Hsp92II | CATG | 5 cut(s) | 212, 269, 594, 686, 874 |
| HspAI | GCGC | 1 cut(s) | 626 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 402 |
| Kzo9I | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| LpnPI | CCDG | 8 cut(s) | 5, 110, 247, 391, 400, 419, 478, 740 |
| Lsp1109I | GCAGC | 2 cut(s) | 851, 941 |
| LweI | GCATC | 2 cut(s) | 466, 720 |
| MaeI | CTAG | 2 cut(s) | 473, 723 |
| MaeII | ACGT | 2 cut(s) | 220, 294 |
| MalI | GATC | 6 cut(s) | 5, 216, 404, 432, 510, 978 |
| MboI | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| MboII | GAAGA | 6 cut(s) | 275, 316, 508, 606, 706, 775 |
| MhlI | GDGCHC | 1 cut(s) | 870 |
| MluCI | AATT | 8 cut(s) | 169, 370, 499, 559, 565, 597, 728, 793 |
| MlyI | GAGTC | 1 cut(s) | 664 |
| MmeI | TCCRAC | 2 cut(s) | 756, 968 |
| MseI | TTAA | 4 cut(s) | 330, 564, 602, 905 |
| MspA1I | CMGCKG | 2 cut(s) | 842, 932 |
| MspI | CCGG | 2 cut(s) | 234, 387 |
| MspR9I | CCNGG | 1 cut(s) | 388 |
| MvnI | CGCG | 1 cut(s) | 628 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 540, 578, 583, 587 |
| NciI | CCSGG | 1 cut(s) | 388 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NdeII | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| NlaIII | CATG | 5 cut(s) | 212, 269, 594, 686, 874 |
| NlaIV | GGNNCC | 2 cut(s) | 13, 385 |
| NspI | RCATGY | 2 cut(s) | 212, 686 |
| PfeI | GAWTC | 5 cut(s) | 107, 260, 607, 949, 958 |
| PkrI | GCNGC | 2 cut(s) | 841, 931 |
| PleI | GAGTC | 1 cut(s) | 663 |
| PpsI | GAGTC | 1 cut(s) | 663 |
| Ppu21I | YACGTR | 2 cut(s) | 221, 295 |
| Psp124BI | GAGCTC | 1 cut(s) | 870 |
| PspN4I | GGNNCC | 2 cut(s) | 13, 385 |
| PspPI | GGNCC | 1 cut(s) | 384 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| SacI | GAGCTC | 1 cut(s) | 870 |
| SaqAI | TTAA | 4 cut(s) | 330, 564, 602, 905 |
| SatI | GCNGC | 2 cut(s) | 840, 930 |
| Sau3AI | GATC | 6 cut(s) | 3, 214, 402, 430, 508, 976 |
| Sau96I | GGNCC | 1 cut(s) | 384 |
| SchI | GAGTC | 1 cut(s) | 664 |
| ScrFI | CCNGG | 1 cut(s) | 388 |
| SduI | GDGCHC | 1 cut(s) | 870 |
| SfaNI | GCATC | 2 cut(s) | 466, 720 |
| SnaBI | TACGTA | 2 cut(s) | 221, 295 |
| Sse9I | AATT | 8 cut(s) | 169, 370, 499, 559, 565, 597, 728, 793 |
| SsiI | CCGC | 5 cut(s) | 71, 534, 842, 932, 1026 |
| SspI | AATATT | 1 cut(s) | 275 |
| SspMI | CTAG | 2 cut(s) | 473, 723 |
| SstI | GAGCTC | 1 cut(s) | 870 |
| StyD4I | CCNGG | 1 cut(s) | 386 |
| TaaI | ACNGT | 1 cut(s) | 746 |
| TaiI | ACGT | 2 cut(s) | 223, 297 |
| TaqI | TCGA | 3 cut(s) | 213, 961, 998 |
| TasI | AATT | 8 cut(s) | 169, 370, 499, 559, 565, 597, 728, 793 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TfiI | GAWTC | 5 cut(s) | 107, 260, 607, 949, 958 |
| Tru1I | TTAA | 4 cut(s) | 330, 564, 602, 905 |
| Tru9I | TTAA | 4 cut(s) | 330, 564, 602, 905 |
| TscAI | CASTG | 1 cut(s) | 497 |
| TseI | GCWGC | 2 cut(s) | 839, 929 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 1 cut(s) | 497 |
| XapI | RAATTY | 3 cut(s) | 169, 597, 728 |
| XbaI | TCTAGA | 1 cut(s) | 472 |
| XceI | RCATGY | 2 cut(s) | 212, 686 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 565, 960 |
| XspI | CTAG | 2 cut(s) | 473, 723 |