ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 578 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 537, 641 |
| Acc36I | ACCTGC | 1 cut(s) | 1066 |
| AccI | GTMKAC | 1 cut(s) | 799 |
| AccII | CGCG | 1 cut(s) | 258 |
| AciI | CCGC | 2 cut(s) | 5, 160 |
| AclWI | GGATC | 2 cut(s) | 494, 507 |
| AcoI | YGGCCR | 1 cut(s) | 975 |
| AcsI | RAATTY | 1 cut(s) | 745 |
| AcyI | GRCGYC | 1 cut(s) | 304 |
| AfaI | GTAC | 4 cut(s) | 215, 344, 454, 925 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1027 |
| AflII | CTTAAG | 1 cut(s) | 1022 |
| AflIII | ACRYGT | 1 cut(s) | 455 |
| AgsI | TTSAA | 1 cut(s) | 561 |
| AjiI | CACGTC | 1 cut(s) | 959 |
| AjnI | CCWGG | 1 cut(s) | 675 |
| Alw26I | GTCTC | 2 cut(s) | 516, 547 |
| AlwI | GGATC | 2 cut(s) | 494, 507 |
| AoxI | GGCC | 2 cut(s) | 819, 975 |
| ApeKI | GCWGC | 3 cut(s) | 162, 962, 1159 |
| ApoI | RAATTY | 1 cut(s) | 745 |
| AspA2I | CCTAGG | 1 cut(s) | 217 |
| AsuHPI | GGTGA | 1 cut(s) | 925 |
| AsuII | TTCGAA | 1 cut(s) | 290 |
| AvrII | CCTAGG | 1 cut(s) | 217 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 915, 948 |
| BalI | TGGCCA | 1 cut(s) | 977 |
| BamHI | GGATCC | 1 cut(s) | 499 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 910, 942 |
| BauI | CACGAG | 2 cut(s) | 432, 513 |
| BbvI | GCAGC | 2 cut(s) | 174, 974 |
| BccI | CCATC | 5 cut(s) | 294, 328, 467, 697, 967 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 248, 270, 282, 304 |
| BciT130I | CCWGG | 1 cut(s) | 677 |
| BcoDI | GTCTC | 2 cut(s) | 516, 547 |
| BfaI | CTAG | 5 cut(s) | 218, 662, 738, 966, 1171 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BfrI | CTTAAG | 1 cut(s) | 1022 |
| BfuAI | ACCTGC | 1 cut(s) | 1066 |
| BisI | GCNGC | 3 cut(s) | 163, 963, 1160 |
| BlnI | CCTAGG | 1 cut(s) | 217 |
| BlsI | GCNGC | 3 cut(s) | 164, 964, 1161 |
| Bme1390I | CCNGG | 1 cut(s) | 677 |
| BmgBI | CACGTC | 1 cut(s) | 959 |
| BmiI | GGNNCC | 1 cut(s) | 501 |
| BmrFI | CCNGG | 1 cut(s) | 677 |
| BmsI | GCATC | 1 cut(s) | 25 |
| Bpu10I | CCTNAGC | 1 cut(s) | 23 |
| Bpu14I | TTCGAA | 1 cut(s) | 290 |
| BsaHI | GRCGYC | 1 cut(s) | 304 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 217, 503, 676 |
| BsaWI | WCCGGW | 1 cut(s) | 95 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 488, 518 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1027 |
| Bse3DI | GCAATG | 2 cut(s) | 281, 599 |
| BseBI | CCWGG | 1 cut(s) | 677 |
| BseDI | CCNNGG | 4 cut(s) | 42, 217, 503, 676 |
| BseGI | GGATG | 3 cut(s) | 40, 305, 478 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1027 |
| BseMI | GCAATG | 2 cut(s) | 281, 599 |
| BseRI | GAGGAG | 2 cut(s) | 59, 251 |
| BseXI | GCAGC | 2 cut(s) | 174, 974 |
| BsgI | GTGCAG | 1 cut(s) | 981 |
| Bsh1236I | CGCG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 821, 977 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslFI | GGGAC | 3 cut(s) | 630, 888, 1067 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1027 |
| BsmAI | GTCTC | 2 cut(s) | 516, 547 |
| BsmFI | GGGAC | 3 cut(s) | 630, 888, 1067 |
| BsmI | GAATGC | 1 cut(s) | 887 |
| BsnI | GGCC | 2 cut(s) | 821, 977 |
| Bsp119I | TTCGAA | 1 cut(s) | 290 |
| Bsp1407I | TGTACA | 1 cut(s) | 342 |
| Bsp143I | GATC | 4 cut(s) | 259, 499, 517, 637 |
| Bsp68I | TCGCGA | 1 cut(s) | 258 |
| BspACI | CCGC | 2 cut(s) | 5, 160 |
| BspANI | GGCC | 2 cut(s) | 821, 977 |
| BspFNI | CGCG | 1 cut(s) | 258 |
| BspLI | GGNNCC | 1 cut(s) | 501 |
| BspMI | ACCTGC | 1 cut(s) | 1066 |
| BspPI | GGATC | 2 cut(s) | 494, 507 |
| BspT104I | TTCGAA | 1 cut(s) | 290 |
| BspTI | CTTAAG | 1 cut(s) | 1022 |
| BsrDI | GCAATG | 2 cut(s) | 281, 599 |
| BsrGI | TGTACA | 1 cut(s) | 342 |
| BssECI | CCNNGG | 4 cut(s) | 42, 217, 503, 676 |
| BssMI | GATC | 4 cut(s) | 259, 499, 517, 637 |
| BssNI | GRCGYC | 1 cut(s) | 304 |
| BssSI | CACGAG | 2 cut(s) | 432, 513 |
| BssT1I | CCWWGG | 1 cut(s) | 217 |
| Bst2BI | CACGAG | 2 cut(s) | 432, 513 |
| Bst2UI | CCWGG | 1 cut(s) | 677 |
| Bst4CI | ACNGT | 3 cut(s) | 232, 452, 797 |
| Bst6I | CTCTTC | 1 cut(s) | 1113 |
| BstACI | GRCGYC | 1 cut(s) | 304 |
| BstAFI | CTTAAG | 1 cut(s) | 1022 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 959, 968 |
| BstAUI | TGTACA | 1 cut(s) | 342 |
| BstBI | TTCGAA | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 1 cut(s) | 409 |
| BstDEI | CTNAG | 3 cut(s) | 23, 210, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 503 |
| BstEII | GGTNACC | 2 cut(s) | 222, 507 |
| BstF5I | GGATG | 3 cut(s) | 40, 305, 478 |
| BstFNI | CGCG | 1 cut(s) | 258 |
| BstKTI | GATC | 4 cut(s) | 262, 502, 520, 640 |
| BstMAI | GTCTC | 2 cut(s) | 516, 547 |
| BstMBI | GATC | 4 cut(s) | 259, 499, 517, 637 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 292, 301, 959, 968 |
| BstNI | CCWGG | 1 cut(s) | 677 |
| BstNSI | RCATGY | 1 cut(s) | 209 |
| BstPI | GGTNACC | 2 cut(s) | 222, 507 |
| BstSCI | CCNGG | 1 cut(s) | 675 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstUI | CGCG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 2 cut(s) | 174, 974 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| BsuRI | GGCC | 2 cut(s) | 821, 977 |
| BtgI | CCRYGG | 1 cut(s) | 503 |
| BtgZI | GCGATG | 1 cut(s) | 986 |
| BtrI | CACGTC | 1 cut(s) | 959 |
| BtsCI | GGATG | 3 cut(s) | 40, 305, 478 |
| BtsI | GCAGTG | 1 cut(s) | 892 |
| BtsIMutI | CAGTG | 2 cut(s) | 574, 892 |
| BtuMI | TCGCGA | 1 cut(s) | 258 |
| BveI | ACCTGC | 1 cut(s) | 1066 |
| Cac8I | GCNNGC | 1 cut(s) | 409 |
| CseI | GACGC | 1 cut(s) | 293 |
| Csp6I | GTAC | 4 cut(s) | 214, 343, 453, 924 |
| CviAII | CATG | 6 cut(s) | 206, 266, 488, 694, 700, 1135 |
| CviQI | GTAC | 4 cut(s) | 214, 343, 453, 924 |
| DdeI | CTNAG | 3 cut(s) | 23, 210, 588 |
| DpnI | GATC | 4 cut(s) | 261, 501, 519, 639 |
| DpnII | GATC | 4 cut(s) | 259, 499, 517, 637 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 537, 641 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 537, 641 |
| EaeI | YGGCCR | 1 cut(s) | 975 |
| Eam1104I | CTCTTC | 1 cut(s) | 1113 |
| EarI | CTCTTC | 1 cut(s) | 1113 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 1 cut(s) | 217 |
| Eco91I | GGTNACC | 2 cut(s) | 222, 507 |
| EcoO65I | GGTNACC | 2 cut(s) | 222, 507 |
| EcoRII | CCWGG | 1 cut(s) | 675 |
| EcoT14I | CCWWGG | 1 cut(s) | 217 |
| ErhI | CCWWGG | 1 cut(s) | 217 |
| FaeI | CATG | 6 cut(s) | 209, 269, 491, 697, 703, 1138 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 407, 439 |
| FaqI | GGGAC | 3 cut(s) | 630, 888, 1067 |
| FatI | CATG | 6 cut(s) | 205, 265, 487, 693, 699, 1134 |
| FblI | GTMKAC | 1 cut(s) | 799 |
| Fnu4HI | GCNGC | 3 cut(s) | 163, 963, 1160 |
| FokI | GGATG | 3 cut(s) | 47, 312, 485 |
| Fsp4HI | GCNGC | 3 cut(s) | 163, 963, 1160 |
| FspBI | CTAG | 5 cut(s) | 218, 662, 738, 966, 1171 |
| GluI | GCNGC | 3 cut(s) | 163, 963, 1160 |
| HaeIII | GGCC | 2 cut(s) | 821, 977 |
| HapII | CCGG | 1 cut(s) | 96 |
| HgaI | GACGC | 1 cut(s) | 293 |
| Hin1I | GRCGYC | 1 cut(s) | 304 |
| Hin1II | CATG | 6 cut(s) | 209, 269, 491, 697, 703, 1138 |
| HincII | GTYRAC | 3 cut(s) | 101, 448, 800 |
| HindII | GTYRAC | 3 cut(s) | 101, 448, 800 |
| HindIII | AAGCTT | 1 cut(s) | 945 |
| HinfI | GANTC | 5 cut(s) | 599, 728, 876, 1061, 1147 |
| HpaI | GTTAAC | 1 cut(s) | 448 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 1 cut(s) | 925 |
| Hpy166II | GTNNAC | 4 cut(s) | 101, 448, 455, 800 |
| Hpy188I | TCNGA | 6 cut(s) | 370, 543, 727, 852, 1045, 1144 |
| Hpy188III | TCNNGA | 6 cut(s) | 257, 434, 515, 521, 738, 873 |
| Hpy8I | GTNNAC | 4 cut(s) | 101, 448, 455, 800 |
| HpyAV | CCTTC | 6 cut(s) | 22, 402, 409, 411, 778, 1123 |
| HpyCH4III | ACNGT | 3 cut(s) | 232, 452, 797 |
| HpyCH4IV | ACGT | 2 cut(s) | 457, 958 |
| HpyCH4V | TGCA | 4 cut(s) | 116, 885, 953, 962 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 292, 301, 959, 968 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 210, 588 |
| HpySE526I | ACGT | 2 cut(s) | 457, 958 |
| Hsp92I | GRCGYC | 1 cut(s) | 304 |
| Hsp92II | CATG | 6 cut(s) | 209, 269, 491, 697, 703, 1138 |
| KspAI | GTTAAC | 1 cut(s) | 448 |
| Kzo9I | GATC | 4 cut(s) | 259, 499, 517, 637 |
| LmnI | GCTCC | 2 cut(s) | 7, 388 |
| LpnPI | CCDG | 7 cut(s) | 109, 397, 662, 669, 689, 939, 1061 |
| Lsp1109I | GCAGC | 2 cut(s) | 174, 974 |
| LweI | GCATC | 1 cut(s) | 25 |
| MaeI | CTAG | 5 cut(s) | 218, 662, 738, 966, 1171 |
| MaeII | ACGT | 2 cut(s) | 457, 958 |
| MaeIII | GTNAC | 2 cut(s) | 222, 507 |
| MalI | GATC | 4 cut(s) | 261, 501, 519, 639 |
| MboI | GATC | 4 cut(s) | 259, 499, 517, 637 |
| MboII | GAAGA | 4 cut(s) | 254, 325, 708, 1100 |
| MfeI | CAATTG | 1 cut(s) | 999 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MlsI | TGGCCA | 1 cut(s) | 977 |
| MluCI | AATT | 9 cut(s) | 109, 274, 364, 387, 464, 688, 745, 999, 1152 |
| MluNI | TGGCCA | 1 cut(s) | 977 |
| MlyI | GAGTC | 2 cut(s) | 737, 870 |
| MmeI | TCCRAC | 2 cut(s) | 521, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 977 |
| MscI | TGGCCA | 1 cut(s) | 977 |
| MseI | TTAA | 6 cut(s) | 108, 447, 536, 1023, 1032, 1092 |
| MslI | CAYNNNNRTG | 1 cut(s) | 698 |
| Msp20I | TGGCCA | 1 cut(s) | 977 |
| MspA1I | CMGCKG | 1 cut(s) | 1162 |
| MspCI | CTTAAG | 1 cut(s) | 1022 |
| MspI | CCGG | 1 cut(s) | 96 |
| MspR9I | CCNGG | 1 cut(s) | 677 |
| MunI | CAATTG | 1 cut(s) | 999 |
| Mva1269I | GAATGC | 1 cut(s) | 887 |
| MvaI | CCWGG | 1 cut(s) | 677 |
| MvnI | CGCG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 292, 301, 959, 968 |
| NdeII | GATC | 4 cut(s) | 259, 499, 517, 637 |
| NlaIII | CATG | 6 cut(s) | 209, 269, 491, 697, 703, 1138 |
| NlaIV | GGNNCC | 1 cut(s) | 501 |
| NruI | TCGCGA | 1 cut(s) | 258 |
| NspI | RCATGY | 1 cut(s) | 209 |
| NspV | TTCGAA | 1 cut(s) | 290 |
| PctI | GAATGC | 1 cut(s) | 887 |
| PfeI | GAWTC | 3 cut(s) | 599, 1061, 1147 |
| PkrI | GCNGC | 3 cut(s) | 164, 964, 1161 |
| PleI | GAGTC | 2 cut(s) | 736, 870 |
| PpsI | GAGTC | 2 cut(s) | 736, 870 |
| PsiI | TTATAA | 1 cut(s) | 578 |
| Psp6I | CCWGG | 1 cut(s) | 675 |
| PspEI | GGTNACC | 2 cut(s) | 222, 507 |
| PspGI | CCWGG | 1 cut(s) | 675 |
| PspN4I | GGNNCC | 1 cut(s) | 501 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| PvuII | CAGCTG | 1 cut(s) | 1162 |
| RruI | TCGCGA | 1 cut(s) | 258 |
| RsaI | GTAC | 4 cut(s) | 215, 344, 454, 925 |
| RsaNI | GTAC | 4 cut(s) | 214, 343, 453, 924 |
| RseI | CAYNNNNRTG | 1 cut(s) | 698 |
| SalI | GTCGAC | 1 cut(s) | 798 |
| SaqAI | TTAA | 6 cut(s) | 108, 447, 536, 1023, 1032, 1092 |
| SatI | GCNGC | 3 cut(s) | 163, 963, 1160 |
| Sau3AI | GATC | 4 cut(s) | 259, 499, 517, 637 |
| SchI | GAGTC | 2 cut(s) | 737, 870 |
| ScrFI | CCNGG | 1 cut(s) | 677 |
| SfaNI | GCATC | 1 cut(s) | 25 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SfuI | TTCGAA | 1 cut(s) | 290 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 698 |
| SmlI | CTYRAG | 1 cut(s) | 1022 |
| SmoI | CTYRAG | 1 cut(s) | 1022 |
| Sse9I | AATT | 9 cut(s) | 109, 274, 364, 387, 464, 688, 745, 999, 1152 |
| SsiI | CCGC | 2 cut(s) | 5, 160 |
| SspMI | CTAG | 5 cut(s) | 218, 662, 738, 966, 1171 |
| StyD4I | CCNGG | 1 cut(s) | 675 |
| StyI | CCWWGG | 1 cut(s) | 217 |
| TaaI | ACNGT | 3 cut(s) | 232, 452, 797 |
| TaiI | ACGT | 2 cut(s) | 460, 961 |
| TaqI | TCGA | 6 cut(s) | 290, 337, 520, 799, 879, 1064 |
| TasI | AATT | 9 cut(s) | 109, 274, 364, 387, 464, 688, 745, 999, 1152 |
| TatI | WGTACW | 1 cut(s) | 342 |
| TfiI | GAWTC | 3 cut(s) | 599, 1061, 1147 |
| Tru1I | TTAA | 6 cut(s) | 108, 447, 536, 1023, 1032, 1092 |
| Tru9I | TTAA | 6 cut(s) | 108, 447, 536, 1023, 1032, 1092 |
| TscAI | CASTG | 2 cut(s) | 574, 892 |
| TseI | GCWGC | 3 cut(s) | 162, 962, 1159 |
| TspDTI | ATGAA | 3 cut(s) | 254, 384, 476 |
| TspGWI | ACGGA | 1 cut(s) | 492 |
| TspRI | CASTG | 2 cut(s) | 574, 892 |
| Vha464I | CTTAAG | 1 cut(s) | 1022 |
| XapI | RAATTY | 1 cut(s) | 745 |
| XbaI | TCTAGA | 1 cut(s) | 737 |
| XceI | RCATGY | 1 cut(s) | 209 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 700 |
| XmaJI | CCTAGG | 1 cut(s) | 217 |
| XmiI | GTMKAC | 1 cut(s) | 799 |
| XspI | CTAG | 5 cut(s) | 218, 662, 738, 966, 1171 |