Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 580 |
| AccB1I | GGYRCC | 1 cut(s) | 580 |
| AccIII | TCCGGA | 1 cut(s) | 381 |
| AciI | CCGC | 2 cut(s) | 200, 766 |
| AclWI | GGATC | 1 cut(s) | 1059 |
| AfaI | GTAC | 4 cut(s) | 65, 482, 582, 868 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 291, 619, 1018, 1047, 1048 |
| AgsI | TTSAA | 2 cut(s) | 121, 907 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 959, 991 |
| AluBI | AGCT | 3 cut(s) | 90, 244, 734 |
| AluI | AGCT | 3 cut(s) | 90, 244, 734 |
| Alw21I | GWGCWC | 1 cut(s) | 246 |
| AlwI | GGATC | 1 cut(s) | 1059 |
| Aor13HI | TCCGGA | 1 cut(s) | 381 |
| AoxI | GGCC | 3 cut(s) | 282, 861, 1083 |
| ApeKI | GCWGC | 1 cut(s) | 986 |
| Asp718I | GGTACC | 1 cut(s) | 580 |
| AspS9I | GGNCC | 4 cut(s) | 283, 861, 961, 1083 |
| AvaII | GGWCC | 1 cut(s) | 961 |
| BanI | GGYRCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 1 cut(s) | 246 |
| BbsI | GAAGAC | 3 cut(s) | 65, 167, 740 |
| Bbv12I | GWGCWC | 1 cut(s) | 246 |
| BbvI | GCAGC | 1 cut(s) | 973 |
| BccI | CCATC | 5 cut(s) | 144, 226, 274, 359, 514 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BfaI | CTAG | 1 cut(s) | 1013 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| BisI | GCNGC | 1 cut(s) | 987 |
| BlsI | GCNGC | 1 cut(s) | 988 |
| BmcAI | AGTACT | 2 cut(s) | 65, 482 |
| Bme18I | GGWCC | 1 cut(s) | 961 |
| BmgT120I | GGNCC | 4 cut(s) | 283, 861, 961, 1083 |
| BmiI | GGNNCC | 3 cut(s) | 582, 862, 963 |
| BoxI | GACNNNNGTC | 1 cut(s) | 312 |
| BpiI | GAAGAC | 3 cut(s) | 65, 167, 740 |
| BpmI | CTGGAG | 1 cut(s) | 916 |
| Bpu10I | CCTNAGC | 2 cut(s) | 515, 849 |
| BpuEI | CTTGAG | 1 cut(s) | 129 |
| Bsa29I | ATCGAT | 1 cut(s) | 668 |
| BsaJI | CCNNGG | 1 cut(s) | 78 |
| BsaWI | WCCGGW | 1 cut(s) | 381 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 332, 362, 623, 653 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 291, 619, 1018, 1047, 1048 |
| Bse1I | ACTGG | 1 cut(s) | 332 |
| BseAI | TCCGGA | 1 cut(s) | 381 |
| BseCI | ATCGAT | 1 cut(s) | 668 |
| BseDI | CCNNGG | 1 cut(s) | 78 |
| BseGI | GGATG | 5 cut(s) | 155, 218, 307, 525, 763 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 291, 619, 1018, 1047, 1048 |
| BseMII | CTCAG | 2 cut(s) | 518, 1034 |
| BseNI | ACTGG | 1 cut(s) | 332 |
| BseRI | GAGGAG | 1 cut(s) | 861 |
| BseXI | GCAGC | 1 cut(s) | 973 |
| BshFI | GGCC | 3 cut(s) | 284, 863, 1085 |
| BshNI | GGYRCC | 1 cut(s) | 580 |
| BshVI | ATCGAT | 1 cut(s) | 668 |
| BsiHKAI | GWGCWC | 1 cut(s) | 246 |
| BsiSI | CCGG | 1 cut(s) | 382 |
| BslFI | GGGAC | 1 cut(s) | 537 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 291, 619, 1018, 1047, 1048 |
| BsmFI | GGGAC | 1 cut(s) | 537 |
| BsnI | GGCC | 3 cut(s) | 284, 863, 1085 |
| Bsp1286I | GDGCHC | 1 cut(s) | 246 |
| Bsp13I | TCCGGA | 1 cut(s) | 381 |
| Bsp143I | GATC | 3 cut(s) | 192, 771, 1051 |
| BspACI | CCGC | 2 cut(s) | 200, 766 |
| BspANI | GGCC | 3 cut(s) | 284, 863, 1085 |
| BspCNI | CTCAG | 2 cut(s) | 519, 1035 |
| BspDI | ATCGAT | 1 cut(s) | 668 |
| BspEI | TCCGGA | 1 cut(s) | 381 |
| BspHI | TCATGA | 1 cut(s) | 505 |
| BspLI | GGNNCC | 3 cut(s) | 582, 862, 963 |
| BspPI | GGATC | 1 cut(s) | 1059 |
| BspT107I | GGYRCC | 1 cut(s) | 580 |
| BsrI | ACTGG | 1 cut(s) | 332 |
| BssECI | CCNNGG | 1 cut(s) | 78 |
| BssMI | GATC | 3 cut(s) | 192, 771, 1051 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 978 |
| BstDEI | CTNAG | 8 cut(s) | 96, 462, 477, 515, 527, 849, 1024, 1043 |
| BstDSI | CCRYGG | 1 cut(s) | 78 |
| BstF5I | GGATG | 5 cut(s) | 155, 218, 307, 525, 763 |
| BstKTI | GATC | 3 cut(s) | 195, 774, 1054 |
| BstMBI | GATC | 3 cut(s) | 192, 771, 1051 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 250, 834, 978 |
| BstNSI | RCATGY | 1 cut(s) | 976 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 312 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstV1I | GCAGC | 1 cut(s) | 973 |
| BstV2I | GAAGAC | 3 cut(s) | 65, 167, 740 |
| Bsu15I | ATCGAT | 1 cut(s) | 668 |
| BsuRI | GGCC | 3 cut(s) | 284, 863, 1085 |
| BsuTUI | ATCGAT | 1 cut(s) | 668 |
| BtgI | CCRYGG | 1 cut(s) | 78 |
| BtsCI | GGATG | 5 cut(s) | 155, 218, 307, 525, 763 |
| BtsI | GCAGTG | 1 cut(s) | 817 |
| BtsIMutI | CAGTG | 2 cut(s) | 325, 817 |
| CciI | TCATGA | 1 cut(s) | 505 |
| Cfr13I | GGNCC | 4 cut(s) | 283, 861, 961, 1083 |
| ClaI | ATCGAT | 1 cut(s) | 668 |
| Csp6I | GTAC | 4 cut(s) | 64, 481, 581, 867 |
| CviQI | GTAC | 4 cut(s) | 64, 481, 581, 867 |
| DdeI | CTNAG | 8 cut(s) | 96, 462, 477, 515, 527, 849, 1024, 1043 |
| DpnI | GATC | 3 cut(s) | 194, 773, 1053 |
| DpnII | GATC | 3 cut(s) | 192, 771, 1051 |
| Ecl136II | GAGCTC | 1 cut(s) | 244 |
| Eco24I | GRGCYC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 961 |
| Eco53kI | GAGCTC | 1 cut(s) | 244 |
| EcoICRI | GAGCTC | 1 cut(s) | 244 |
| EcoO109I | RGGNCCY | 1 cut(s) | 861 |
| EcoT22I | ATGCAT | 2 cut(s) | 273, 696 |
| EcoT38I | GRGCYC | 1 cut(s) | 246 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FaqI | GGGAC | 1 cut(s) | 537 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 987 |
| FokI | GGATG | 5 cut(s) | 162, 205, 314, 532, 770 |
| FriOI | GRGCYC | 1 cut(s) | 246 |
| Fsp4HI | GCNGC | 1 cut(s) | 987 |
| FspBI | CTAG | 1 cut(s) | 1013 |
| GluI | GCNGC | 1 cut(s) | 987 |
| GsuI | CTGGAG | 1 cut(s) | 916 |
| HaeIII | GGCC | 3 cut(s) | 284, 863, 1085 |
| HapII | CCGG | 1 cut(s) | 382 |
| HinfI | GANTC | 6 cut(s) | 45, 142, 322, 449, 665, 1037 |
| HpaII | CCGG | 1 cut(s) | 382 |
| Hpy166II | GTNNAC | 1 cut(s) | 961 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 602 |
| Hpy188III | TCNNGA | 6 cut(s) | 118, 190, 382, 506, 706, 895 |
| Hpy8I | GTNNAC | 1 cut(s) | 961 |
| HpyAV | CCTTC | 2 cut(s) | 8, 175 |
| HpyCH4IV | ACGT | 2 cut(s) | 129, 943 |
| HpyCH4V | TGCA | 8 cut(s) | 10, 40, 271, 391, 694, 940, 972, 981 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 250, 834, 978 |
| HpyF3I | CTNAG | 8 cut(s) | 96, 462, 477, 515, 527, 849, 1024, 1043 |
| HpySE526I | ACGT | 2 cut(s) | 129, 943 |
| Kpn2I | TCCGGA | 1 cut(s) | 381 |
| KpnI | GGTACC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| Kzo9I | GATC | 3 cut(s) | 192, 771, 1051 |
| LmnI | GCTCC | 1 cut(s) | 249 |
| Lsp1109I | GCAGC | 1 cut(s) | 973 |
| MaeI | CTAG | 1 cut(s) | 1013 |
| MaeII | ACGT | 2 cut(s) | 129, 943 |
| MalI | GATC | 3 cut(s) | 194, 773, 1053 |
| MboI | GATC | 3 cut(s) | 192, 771, 1051 |
| MboII | GAAGA | 5 cut(s) | 65, 172, 740, 919, 1060 |
| MfeI | CAATTG | 1 cut(s) | 1003 |
| MhlI | GDGCHC | 1 cut(s) | 246 |
| MluCI | AATT | 5 cut(s) | 84, 213, 344, 654, 1003 |
| MlyI | GAGTC | 3 cut(s) | 54, 136, 1031 |
| MmeI | TCCRAC | 1 cut(s) | 625 |
| MnlI | CCTC | 9 cut(s) | 147, 417, 423, 522, 616, 625, 882, 891, 922 |
| Mph1103I | ATGCAT | 2 cut(s) | 273, 696 |
| MroI | TCCGGA | 1 cut(s) | 381 |
| MseI | TTAA | 2 cut(s) | 399, 653 |
| MslI | CAYNNNNRTG | 1 cut(s) | 560 |
| MspI | CCGG | 1 cut(s) | 382 |
| MunI | CAATTG | 1 cut(s) | 1003 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 250, 834, 978 |
| NdeII | GATC | 3 cut(s) | 192, 771, 1051 |
| NlaIV | GGNNCC | 3 cut(s) | 582, 862, 963 |
| NsiI | ATGCAT | 2 cut(s) | 273, 696 |
| NspI | RCATGY | 1 cut(s) | 976 |
| PagI | TCATGA | 1 cut(s) | 505 |
| PfeI | GAWTC | 3 cut(s) | 322, 449, 665 |
| PkrI | GCNGC | 1 cut(s) | 988 |
| PleI | GAGTC | 3 cut(s) | 53, 136, 1031 |
| PpsI | GAGTC | 3 cut(s) | 53, 136, 1031 |
| PshAI | GACNNNNGTC | 1 cut(s) | 312 |
| Psp124BI | GAGCTC | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 3 cut(s) | 582, 862, 963 |
| PspPI | GGNCC | 4 cut(s) | 283, 861, 961, 1083 |
| RsaI | GTAC | 4 cut(s) | 65, 482, 582, 868 |
| RsaNI | GTAC | 4 cut(s) | 64, 481, 581, 867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 560 |
| SacI | GAGCTC | 1 cut(s) | 246 |
| SaqAI | TTAA | 2 cut(s) | 399, 653 |
| SatI | GCNGC | 1 cut(s) | 987 |
| Sau3AI | GATC | 3 cut(s) | 192, 771, 1051 |
| Sau96I | GGNCC | 4 cut(s) | 283, 861, 961, 1083 |
| ScaI | AGTACT | 2 cut(s) | 65, 482 |
| SchI | GAGTC | 3 cut(s) | 54, 136, 1031 |
| SduI | GDGCHC | 1 cut(s) | 246 |
| SetI | ASST | 9 cut(s) | 92, 132, 246, 533, 540, 586, 736, 855, 946 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| SinI | GGWCC | 1 cut(s) | 961 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 1 cut(s) | 144 |
| SmoI | CTYRAG | 1 cut(s) | 144 |
| Sse9I | AATT | 5 cut(s) | 84, 213, 344, 654, 1003 |
| SsiI | CCGC | 2 cut(s) | 200, 766 |
| SspI | AATATT | 1 cut(s) | 913 |
| SspMI | CTAG | 1 cut(s) | 1013 |
| SstI | GAGCTC | 1 cut(s) | 246 |
| TaiI | ACGT | 2 cut(s) | 132, 946 |
| TaqI | TCGA | 4 cut(s) | 48, 316, 452, 668 |
| TasI | AATT | 5 cut(s) | 84, 213, 344, 654, 1003 |
| TatI | WGTACW | 3 cut(s) | 63, 480, 866 |
| TfiI | GAWTC | 3 cut(s) | 322, 449, 665 |
| Tru1I | TTAA | 2 cut(s) | 399, 653 |
| Tru9I | TTAA | 2 cut(s) | 399, 653 |
| TscAI | CASTG | 2 cut(s) | 332, 817 |
| TseI | GCWGC | 1 cut(s) | 986 |
| TspDTI | ATGAA | 3 cut(s) | 16, 522, 711 |
| TspGWI | ACGGA | 3 cut(s) | 95, 116, 550 |
| TspRI | CASTG | 2 cut(s) | 332, 817 |
| VpaK11BI | GGWCC | 1 cut(s) | 961 |
| XceI | RCATGY | 1 cut(s) | 976 |
| XspI | CTAG | 1 cut(s) | 1013 |
| ZrmI | AGTACT | 2 cut(s) | 65, 482 |
| Zsp2I | ATGCAT | 2 cut(s) | 273, 696 |