Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu_bind_like | PF02298 | 33 - 113 | 3.4e-25 | Plastocyanin-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AdeI | CACNNNGTG | 1 cut(s) | 193 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 124 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 7 cut(s) | 16, 122, 139, 185, 233, 349, 371 |
| AluI | AGCT | 7 cut(s) | 16, 122, 139, 185, 233, 349, 371 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 236, 245 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 2 cut(s) | 230, 407 |
| AseI | ATTAAT | 1 cut(s) | 105 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 350 |
| AspS9I | GGNCC | 2 cut(s) | 99, 338 |
| AsuHPI | GGTGA | 3 cut(s) | 95, 164, 214 |
| AvaII | GGWCC | 2 cut(s) | 99, 338 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 295, 328 |
| BanII | GRGCYC | 2 cut(s) | 130, 187 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BbvI | GCAGC | 2 cut(s) | 242, 419 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BclI | TGATCA | 1 cut(s) | 450 |
| BfaI | CTAG | 2 cut(s) | 281, 384 |
| BfmI | CTRYAG | 2 cut(s) | 237, 405 |
| BisI | GCNGC | 2 cut(s) | 231, 408 |
| BlsI | GCNGC | 2 cut(s) | 232, 409 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 2 cut(s) | 99, 338 |
| BmgT120I | GGNCC | 2 cut(s) | 99, 338 |
| BmiI | GGNNCC | 2 cut(s) | 218, 340 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmrI | ACTGGG | 1 cut(s) | 222 |
| BmsI | GCATC | 1 cut(s) | 465 |
| BmuI | ACTGGG | 1 cut(s) | 222 |
| Bpu10I | CCTNAGC | 1 cut(s) | 129 |
| BsaBI | GATNNNNATC | 1 cut(s) | 479 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 124 |
| Bse1I | ACTGG | 1 cut(s) | 217 |
| Bse8I | GATNNNNATC | 1 cut(s) | 479 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseGI | GGATG | 3 cut(s) | 274, 453, 480 |
| BseJI | GATNNNNATC | 1 cut(s) | 479 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BseNI | ACTGG | 1 cut(s) | 217 |
| BseXI | GCAGC | 2 cut(s) | 242, 419 |
| BsgI | GTGCAG | 1 cut(s) | 249 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BsmI | GAATGC | 1 cut(s) | 465 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 2 cut(s) | 130, 187 |
| Bsp143I | GATC | 1 cut(s) | 450 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspLI | GGNNCC | 2 cut(s) | 218, 340 |
| BspMAI | CTGCAG | 2 cut(s) | 241, 409 |
| BspQI | GCTCTTC | 2 cut(s) | 23, 146 |
| BsrI | ACTGG | 1 cut(s) | 217 |
| BssMI | GATC | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 3 cut(s) | 247, 329, 361 |
| Bst6I | CTCTTC | 3 cut(s) | 13, 23, 146 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 2 cut(s) | 241, 369 |
| BstDEI | CTNAG | 3 cut(s) | 12, 129, 321 |
| BstF5I | GGATG | 3 cut(s) | 274, 453, 480 |
| BstKTI | GATC | 1 cut(s) | 453 |
| BstMBI | GATC | 1 cut(s) | 450 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 236, 377 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstSFI | CTRYAG | 2 cut(s) | 237, 405 |
| BstV1I | GCAGC | 2 cut(s) | 242, 419 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsCI | GGATG | 3 cut(s) | 274, 453, 480 |
| BtsIMutI | CAGTG | 2 cut(s) | 243, 325 |
| Cac8I | GCNNGC | 2 cut(s) | 241, 369 |
| CaiI | CAGNNNCTG | 2 cut(s) | 236, 245 |
| Cfr13I | GGNCC | 2 cut(s) | 99, 338 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 3 cut(s) | 12, 129, 321 |
| DpnI | GATC | 1 cut(s) | 452 |
| DpnII | GATC | 1 cut(s) | 450 |
| DraIII | CACNNNGTG | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 3 cut(s) | 13, 23, 146 |
| EarI | CTCTTC | 3 cut(s) | 13, 23, 146 |
| Ecl136II | GAGCTC | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 2 cut(s) | 130, 187 |
| Eco47I | GGWCC | 2 cut(s) | 99, 338 |
| Eco53kI | GAGCTC | 1 cut(s) | 185 |
| EcoICRI | GAGCTC | 1 cut(s) | 185 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT38I | GRGCYC | 2 cut(s) | 130, 187 |
| FaiI | YATR | 7 cut(s) | 23, 147, 308, 310, 356, 365, 416 |
| FauNDI | CATATG | 1 cut(s) | 308 |
| FbaI | TGATCA | 1 cut(s) | 450 |
| Fnu4HI | GCNGC | 2 cut(s) | 231, 408 |
| FokI | GGATG | 3 cut(s) | 281, 460, 487 |
| FriOI | GRGCYC | 2 cut(s) | 130, 187 |
| Fsp4HI | GCNGC | 2 cut(s) | 231, 408 |
| FspBI | CTAG | 2 cut(s) | 281, 384 |
| GluI | GCNGC | 2 cut(s) | 231, 408 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HindIII | AAGCTT | 2 cut(s) | 120, 347 |
| HphI | GGTGA | 3 cut(s) | 95, 164, 214 |
| Hpy166II | GTNNAC | 1 cut(s) | 263 |
| Hpy8I | GTNNAC | 1 cut(s) | 263 |
| HpyAV | CCTTC | 1 cut(s) | 173 |
| HpyCH4III | ACNGT | 3 cut(s) | 247, 329, 361 |
| HpyCH4V | TGCA | 3 cut(s) | 230, 239, 407 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 236, 377 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 129, 321 |
| Ksp22I | TGATCA | 1 cut(s) | 450 |
| Kzo9I | GATC | 1 cut(s) | 450 |
| LguI | GCTCTTC | 2 cut(s) | 23, 146 |
| LmnI | GCTCC | 3 cut(s) | 182, 238, 385 |
| Lsp1109I | GCAGC | 2 cut(s) | 242, 419 |
| LweI | GCATC | 1 cut(s) | 465 |
| MaeI | CTAG | 2 cut(s) | 281, 384 |
| MaeIII | GTNAC | 1 cut(s) | 152 |
| MalI | GATC | 1 cut(s) | 452 |
| MboI | GATC | 1 cut(s) | 450 |
| MboII | GAAGA | 3 cut(s) | 10, 133, 306 |
| MhlI | GDGCHC | 2 cut(s) | 130, 187 |
| MluCI | AATT | 1 cut(s) | 57 |
| MmeI | TCCRAC | 2 cut(s) | 77, 316 |
| MnlI | CCTC | 2 cut(s) | 16, 412 |
| MroXI | GAANNNNTTC | 1 cut(s) | 350 |
| MseI | TTAA | 5 cut(s) | 105, 168, 198, 254, 426 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| Mva1269I | GAATGC | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 236, 377 |
| NdeI | CATATG | 1 cut(s) | 308 |
| NdeII | GATC | 1 cut(s) | 450 |
| NlaIV | GGNNCC | 2 cut(s) | 218, 340 |
| NmuCI | GTSAC | 1 cut(s) | 152 |
| PciSI | GCTCTTC | 2 cut(s) | 23, 146 |
| PctI | GAATGC | 1 cut(s) | 465 |
| PdmI | GAANNNNTTC | 1 cut(s) | 350 |
| PkrI | GCNGC | 2 cut(s) | 232, 409 |
| PshBI | ATTAAT | 1 cut(s) | 105 |
| Psp124BI | GAGCTC | 1 cut(s) | 187 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 2 cut(s) | 218, 340 |
| PspPI | GGNCC | 2 cut(s) | 99, 338 |
| PstI | CTGCAG | 2 cut(s) | 241, 409 |
| PstNI | CAGNNNCTG | 2 cut(s) | 236, 245 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| SacI | GAGCTC | 1 cut(s) | 187 |
| SapI | GCTCTTC | 2 cut(s) | 23, 146 |
| SaqAI | TTAA | 5 cut(s) | 105, 168, 198, 254, 426 |
| SatI | GCNGC | 2 cut(s) | 231, 408 |
| Sau3AI | GATC | 1 cut(s) | 450 |
| Sau96I | GGNCC | 2 cut(s) | 99, 338 |
| SbfI | CCTGCAGG | 1 cut(s) | 241 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SdaI | CCTGCAGG | 1 cut(s) | 241 |
| SduI | GDGCHC | 2 cut(s) | 130, 187 |
| SfaNI | GCATC | 1 cut(s) | 465 |
| SfcI | CTRYAG | 2 cut(s) | 237, 405 |
| SinI | GGWCC | 2 cut(s) | 99, 338 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 241 |
| Sse9I | AATT | 1 cut(s) | 57 |
| SspMI | CTAG | 2 cut(s) | 281, 384 |
| SstI | GAGCTC | 1 cut(s) | 187 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 3 cut(s) | 247, 329, 361 |
| TasI | AATT | 1 cut(s) | 57 |
| Tru1I | TTAA | 5 cut(s) | 105, 168, 198, 254, 426 |
| Tru9I | TTAA | 5 cut(s) | 105, 168, 198, 254, 426 |
| TscAI | CASTG | 2 cut(s) | 250, 332 |
| TseFI | GTSAC | 1 cut(s) | 152 |
| TseI | GCWGC | 2 cut(s) | 230, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 152 |
| TspDTI | ATGAA | 2 cut(s) | 10, 343 |
| TspRI | CASTG | 2 cut(s) | 250, 332 |
| VpaK11BI | GGWCC | 2 cut(s) | 99, 338 |
| VspI | ATTAAT | 1 cut(s) | 105 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 350 |
| XspI | CTAG | 2 cut(s) | 281, 384 |