ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 789 |
| Acc36I | ACCTGC | 1 cut(s) | 789 |
| Acc65I | GGTACC | 1 cut(s) | 153 |
| AccB1I | GGYRCC | 3 cut(s) | 153, 856, 1091 |
| AccII | CGCG | 1 cut(s) | 516 |
| AclWI | GGATC | 1 cut(s) | 1002 |
| AcsI | RAATTY | 2 cut(s) | 56, 881 |
| AcuI | CTGAAG | 4 cut(s) | 464, 469, 1130, 1170 |
| AfaI | GTAC | 2 cut(s) | 155, 936 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 736 |
| AgsI | TTSAA | 7 cut(s) | 34, 280, 371, 478, 496, 542, 677 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 723, 755 |
| AleI | CACNNNNGTG | 1 cut(s) | 22 |
| AluBI | AGCT | 9 cut(s) | 169, 178, 276, 283, 442, 492, 951, 1001, 1100 |
| AluI | AGCT | 9 cut(s) | 169, 178, 276, 283, 442, 492, 951, 1001, 1100 |
| Alw26I | GTCTC | 4 cut(s) | 205, 210, 493, 614 |
| AlwI | GGATC | 1 cut(s) | 1002 |
| AoxI | GGCC | 2 cut(s) | 262, 525 |
| ApoI | RAATTY | 2 cut(s) | 56, 881 |
| Asp718I | GGTACC | 1 cut(s) | 153 |
| AspLEI | GCGC | 1 cut(s) | 516 |
| AspS9I | GGNCC | 2 cut(s) | 263, 526 |
| AsuHPI | GGTGA | 3 cut(s) | 595, 770, 1128 |
| AsuII | TTCGAA | 1 cut(s) | 793 |
| BanI | GGYRCC | 3 cut(s) | 153, 856, 1091 |
| BauI | CACGAG | 2 cut(s) | 786, 1255 |
| BbsI | GAAGAC | 1 cut(s) | 802 |
| BccI | CCATC | 6 cut(s) | 153, 182, 318, 342, 590, 729 |
| BceAI | ACGGC | 1 cut(s) | 12 |
| BclI | TGATCA | 1 cut(s) | 238 |
| BcoDI | GTCTC | 4 cut(s) | 205, 210, 493, 614 |
| BfaI | CTAG | 3 cut(s) | 302, 753, 971 |
| BfmI | CTRYAG | 1 cut(s) | 891 |
| BfuAI | ACCTGC | 1 cut(s) | 789 |
| BmgT120I | GGNCC | 2 cut(s) | 263, 526 |
| BmiI | GGNNCC | 5 cut(s) | 155, 265, 741, 858, 1093 |
| BmsI | GCATC | 5 cut(s) | 106, 610, 685, 883, 1092 |
| BpiI | GAAGAC | 1 cut(s) | 802 |
| BpmI | CTGGAG | 2 cut(s) | 734, 935 |
| Bpu14I | TTCGAA | 1 cut(s) | 793 |
| BpuEI | CTTGAG | 2 cut(s) | 554, 596 |
| Bsa29I | ATCGAT | 2 cut(s) | 318, 322 |
| BsaBI | GATNNNNATC | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 2 cut(s) | 522, 1224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 736 |
| Bse1I | ACTGG | 1 cut(s) | 306 |
| Bse8I | GATNNNNATC | 1 cut(s) | 318 |
| BseCI | ATCGAT | 2 cut(s) | 318, 322 |
| BseDI | CCNNGG | 2 cut(s) | 522, 1224 |
| BseGI | GGATG | 2 cut(s) | 121, 1158 |
| BseJI | GATNNNNATC | 1 cut(s) | 318 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 736 |
| BseMII | CTCAG | 1 cut(s) | 935 |
| BseNI | ACTGG | 1 cut(s) | 306 |
| BseRI | GAGGAG | 1 cut(s) | 932 |
| Bsh1236I | CGCG | 1 cut(s) | 516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 322 |
| BshFI | GGCC | 2 cut(s) | 264, 527 |
| BshNI | GGYRCC | 3 cut(s) | 153, 856, 1091 |
| BshVI | ATCGAT | 2 cut(s) | 318, 322 |
| BsiEI | CGRYCG | 1 cut(s) | 322 |
| BsiSI | CCGG | 1 cut(s) | 1210 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 736 |
| BsmAI | GTCTC | 4 cut(s) | 205, 210, 493, 614 |
| BsmBI | CGTCTC | 2 cut(s) | 210, 614 |
| BsmI | GAATGC | 1 cut(s) | 1231 |
| BsnI | GGCC | 2 cut(s) | 264, 527 |
| Bsp119I | TTCGAA | 1 cut(s) | 793 |
| Bsp143I | GATC | 4 cut(s) | 238, 319, 910, 994 |
| BspANI | GGCC | 2 cut(s) | 264, 527 |
| BspCNI | CTCAG | 1 cut(s) | 936 |
| BspDI | ATCGAT | 2 cut(s) | 318, 322 |
| BspFNI | CGCG | 1 cut(s) | 516 |
| BspLI | GGNNCC | 5 cut(s) | 155, 265, 741, 858, 1093 |
| BspMI | ACCTGC | 1 cut(s) | 789 |
| BspPI | GGATC | 1 cut(s) | 1002 |
| BspT104I | TTCGAA | 1 cut(s) | 793 |
| BspT107I | GGYRCC | 3 cut(s) | 153, 856, 1091 |
| BsrI | ACTGG | 1 cut(s) | 306 |
| BssECI | CCNNGG | 2 cut(s) | 522, 1224 |
| BssMI | GATC | 4 cut(s) | 238, 319, 910, 994 |
| BssSI | CACGAG | 2 cut(s) | 786, 1255 |
| BssT1I | CCWWGG | 1 cut(s) | 522 |
| Bst2BI | CACGAG | 2 cut(s) | 786, 1255 |
| Bst4CI | ACNGT | 1 cut(s) | 593 |
| Bst6I | CTCTTC | 2 cut(s) | 491, 570 |
| BstBI | TTCGAA | 1 cut(s) | 793 |
| BstC8I | GCNNGC | 2 cut(s) | 1167, 1221 |
| BstDEI | CTNAG | 3 cut(s) | 250, 640, 944 |
| BstF5I | GGATG | 2 cut(s) | 121, 1158 |
| BstFNI | CGCG | 1 cut(s) | 516 |
| BstHHI | GCGC | 1 cut(s) | 516 |
| BstKTI | GATC | 4 cut(s) | 241, 322, 913, 997 |
| BstMAI | GTCTC | 4 cut(s) | 205, 210, 493, 614 |
| BstMBI | GATC | 4 cut(s) | 238, 319, 910, 994 |
| BstMCI | CGRYCG | 1 cut(s) | 322 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 13, 175, 489, 839 |
| BstSFI | CTRYAG | 1 cut(s) | 891 |
| BstUI | CGCG | 1 cut(s) | 516 |
| BstV2I | GAAGAC | 1 cut(s) | 802 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 712 |
| Bsu15I | ATCGAT | 2 cut(s) | 318, 322 |
| BsuRI | GGCC | 2 cut(s) | 264, 527 |
| BsuTUI | ATCGAT | 2 cut(s) | 318, 322 |
| BtsCI | GGATG | 2 cut(s) | 121, 1158 |
| BtsI | GCAGTG | 2 cut(s) | 126, 392 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 200, 392 |
| BveI | ACCTGC | 1 cut(s) | 789 |
| Cac8I | GCNNGC | 2 cut(s) | 1167, 1221 |
| CfoI | GCGC | 1 cut(s) | 516 |
| Cfr13I | GGNCC | 2 cut(s) | 263, 526 |
| ClaI | ATCGAT | 2 cut(s) | 318, 322 |
| Csp6I | GTAC | 2 cut(s) | 154, 935 |
| CviAII | CATG | 3 cut(s) | 242, 405, 867 |
| CviQI | GTAC | 2 cut(s) | 154, 935 |
| DdeI | CTNAG | 3 cut(s) | 250, 640, 944 |
| DpnI | GATC | 4 cut(s) | 240, 321, 912, 996 |
| DpnII | GATC | 4 cut(s) | 238, 319, 910, 994 |
| DraI | TTTAAA | 3 cut(s) | 364, 438, 822 |
| Eam1104I | CTCTTC | 2 cut(s) | 491, 570 |
| EarI | CTCTTC | 2 cut(s) | 491, 570 |
| Eco130I | CCWWGG | 1 cut(s) | 522 |
| Eco32I | GATATC | 1 cut(s) | 316 |
| Eco57I | CTGAAG | 4 cut(s) | 464, 469, 1130, 1170 |
| EcoRV | GATATC | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 522 |
| ErhI | CCWWGG | 1 cut(s) | 522 |
| Esp3I | CGTCTC | 2 cut(s) | 210, 614 |
| FaeI | CATG | 3 cut(s) | 245, 408, 870 |
| FaiI | YATR | 9 cut(s) | 83, 243, 273, 406, 428, 587, 686, 868, 893 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 522, 554 |
| FatI | CATG | 3 cut(s) | 241, 404, 866 |
| FbaI | TGATCA | 1 cut(s) | 238 |
| FokI | GGATG | 2 cut(s) | 128, 1165 |
| FspBI | CTAG | 3 cut(s) | 302, 753, 971 |
| GlaI | GCGC | 1 cut(s) | 515 |
| GsuI | CTGGAG | 2 cut(s) | 734, 935 |
| HaeIII | GGCC | 2 cut(s) | 264, 527 |
| HapII | CCGG | 1 cut(s) | 1210 |
| HhaI | GCGC | 1 cut(s) | 516 |
| Hin1II | CATG | 3 cut(s) | 245, 408, 870 |
| Hin6I | GCGC | 1 cut(s) | 514 |
| HinP1I | GCGC | 1 cut(s) | 514 |
| HincII | GTYRAC | 1 cut(s) | 727 |
| HindII | GTYRAC | 1 cut(s) | 727 |
| HindIII | AAGCTT | 2 cut(s) | 167, 281 |
| HinfI | GANTC | 2 cut(s) | 430, 1253 |
| HpaII | CCGG | 1 cut(s) | 1210 |
| HphI | GGTGA | 3 cut(s) | 595, 770, 1128 |
| Hpy166II | GTNNAC | 4 cut(s) | 256, 727, 1018, 1136 |
| Hpy188I | TCNGA | 5 cut(s) | 879, 945, 1149, 1189, 1237 |
| Hpy8I | GTNNAC | 4 cut(s) | 256, 727, 1018, 1136 |
| HpyAV | CCTTC | 5 cut(s) | 374, 411, 785, 950, 994 |
| HpyCH4III | ACNGT | 1 cut(s) | 593 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 245, 803, 874, 1231 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 13, 175, 489, 839 |
| HpyF3I | CTNAG | 3 cut(s) | 250, 640, 944 |
| Hsp92II | CATG | 3 cut(s) | 245, 408, 870 |
| HspAI | GCGC | 1 cut(s) | 514 |
| KpnI | GGTACC | 1 cut(s) | 157 |
| Ksp22I | TGATCA | 1 cut(s) | 238 |
| Kzo9I | GATC | 4 cut(s) | 238, 319, 910, 994 |
| LmnI | GCTCC | 4 cut(s) | 489, 628, 956, 1212 |
| LweI | GCATC | 5 cut(s) | 106, 610, 685, 883, 1092 |
| MaeI | CTAG | 3 cut(s) | 302, 753, 971 |
| MaeIII | GTNAC | 5 cut(s) | 96, 226, 517, 700, 812 |
| MalI | GATC | 4 cut(s) | 240, 321, 912, 996 |
| MboI | GATC | 4 cut(s) | 238, 319, 910, 994 |
| MboII | GAAGA | 5 cut(s) | 457, 508, 557, 807, 1176 |
| MluCI | AATT | 6 cut(s) | 56, 108, 448, 635, 881, 1103 |
| MlyI | GAGTC | 1 cut(s) | 1247 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MseI | TTAA | 7 cut(s) | 363, 437, 821, 906, 926, 1130, 1161 |
| MslI | CAYNNNNRTG | 2 cut(s) | 22, 906 |
| MspI | CCGG | 1 cut(s) | 1210 |
| MssI | GTTTAAAC | 1 cut(s) | 364 |
| Mva1269I | GAATGC | 1 cut(s) | 1231 |
| MvnI | CGCG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 13, 175, 489, 839 |
| NdeII | GATC | 4 cut(s) | 238, 319, 910, 994 |
| NlaIII | CATG | 3 cut(s) | 245, 408, 870 |
| NlaIV | GGNNCC | 5 cut(s) | 155, 265, 741, 858, 1093 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| NspV | TTCGAA | 1 cut(s) | 793 |
| OliI | CACNNNNGTG | 1 cut(s) | 22 |
| PaqCI | CACCTGC | 1 cut(s) | 789 |
| PctI | GAATGC | 1 cut(s) | 1231 |
| PfeI | GAWTC | 1 cut(s) | 430 |
| Ple19I | CGATCG | 1 cut(s) | 322 |
| PleI | GAGTC | 1 cut(s) | 1247 |
| PmeI | GTTTAAAC | 1 cut(s) | 364 |
| PpsI | GAGTC | 1 cut(s) | 1247 |
| PspN4I | GGNNCC | 5 cut(s) | 155, 265, 741, 858, 1093 |
| PspPI | GGNCC | 2 cut(s) | 263, 526 |
| PvuI | CGATCG | 1 cut(s) | 322 |
| RsaI | GTAC | 2 cut(s) | 155, 936 |
| RsaNI | GTAC | 2 cut(s) | 154, 935 |
| RseI | CAYNNNNRTG | 2 cut(s) | 22, 906 |
| SaqAI | TTAA | 7 cut(s) | 363, 437, 821, 906, 926, 1130, 1161 |
| Sau3AI | GATC | 4 cut(s) | 238, 319, 910, 994 |
| Sau96I | GGNCC | 2 cut(s) | 263, 526 |
| SchI | GAGTC | 1 cut(s) | 1247 |
| SfaNI | GCATC | 5 cut(s) | 106, 610, 685, 883, 1092 |
| SfcI | CTRYAG | 1 cut(s) | 891 |
| SfuI | TTCGAA | 1 cut(s) | 793 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 22, 906 |
| SmlI | CTYRAG | 2 cut(s) | 569, 611 |
| SmoI | CTYRAG | 2 cut(s) | 569, 611 |
| Sse9I | AATT | 6 cut(s) | 56, 108, 448, 635, 881, 1103 |
| SspMI | CTAG | 3 cut(s) | 302, 753, 971 |
| StyI | CCWWGG | 1 cut(s) | 522 |
| TaaI | ACNGT | 1 cut(s) | 593 |
| TaqI | TCGA | 4 cut(s) | 318, 322, 793, 997 |
| TasI | AATT | 6 cut(s) | 56, 108, 448, 635, 881, 1103 |
| TfiI | GAWTC | 1 cut(s) | 430 |
| Tru1I | TTAA | 7 cut(s) | 363, 437, 821, 906, 926, 1130, 1161 |
| Tru9I | TTAA | 7 cut(s) | 363, 437, 821, 906, 926, 1130, 1161 |
| TscAI | CASTG | 3 cut(s) | 126, 200, 392 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 4 cut(s) | 393, 422, 574, 1102 |
| TspRI | CASTG | 3 cut(s) | 126, 200, 392 |
| XapI | RAATTY | 2 cut(s) | 56, 881 |
| XspI | CTAG | 3 cut(s) | 302, 753, 971 |