ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 1 - 50 | 1e-08 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 264 |
| AfaI | GTAC | 3 cut(s) | 180, 386, 505 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 264, 455 |
| AgsI | TTSAA | 2 cut(s) | 22, 119 |
| AhlI | ACTAGT | 1 cut(s) | 500 |
| AjnI | CCWGG | 4 cut(s) | 169, 348, 378, 437 |
| AluBI | AGCT | 1 cut(s) | 272 |
| AluI | AGCT | 1 cut(s) | 272 |
| Alw26I | GTCTC | 2 cut(s) | 104, 380 |
| AoxI | GGCC | 1 cut(s) | 80 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| AseI | ATTAAT | 1 cut(s) | 471 |
| AsuHPI | GGTGA | 2 cut(s) | 355, 475 |
| BbvI | GCAGC | 1 cut(s) | 281 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BciT130I | CCWGG | 4 cut(s) | 171, 350, 380, 439 |
| BcoDI | GTCTC | 2 cut(s) | 104, 380 |
| BcuI | ACTAGT | 1 cut(s) | 500 |
| BfaI | CTAG | 2 cut(s) | 204, 501 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| BmcAI | AGTACT | 1 cut(s) | 505 |
| Bme1390I | CCNGG | 4 cut(s) | 171, 350, 380, 439 |
| BmiI | GGNNCC | 1 cut(s) | 556 |
| BmrFI | CCNGG | 4 cut(s) | 171, 350, 380, 439 |
| BmrI | ACTGGG | 1 cut(s) | 516 |
| BmsI | GCATC | 3 cut(s) | 151, 190, 403 |
| BmuI | ACTGGG | 1 cut(s) | 516 |
| BpmI | CTGGAG | 3 cut(s) | 92, 192, 362 |
| BsaJI | CCNNGG | 1 cut(s) | 437 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 264, 455 |
| Bse1I | ACTGG | 1 cut(s) | 511 |
| BseBI | CCWGG | 4 cut(s) | 171, 350, 380, 439 |
| BseDI | CCNNGG | 1 cut(s) | 437 |
| BseGI | GGATG | 1 cut(s) | 166 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 264, 455 |
| BseNI | ACTGG | 1 cut(s) | 511 |
| BseXI | GCAGC | 1 cut(s) | 281 |
| BsgI | GTGCAG | 1 cut(s) | 474 |
| BshFI | GGCC | 1 cut(s) | 82 |
| BslFI | GGGAC | 1 cut(s) | 419 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 264, 455 |
| BsmAI | GTCTC | 2 cut(s) | 104, 380 |
| BsmBI | CGTCTC | 1 cut(s) | 380 |
| BsmFI | GGGAC | 1 cut(s) | 419 |
| BsnI | GGCC | 1 cut(s) | 82 |
| BspANI | GGCC | 1 cut(s) | 82 |
| BspLI | GGNNCC | 1 cut(s) | 556 |
| BsrI | ACTGG | 1 cut(s) | 511 |
| BssECI | CCNNGG | 1 cut(s) | 437 |
| Bst2UI | CCWGG | 4 cut(s) | 171, 350, 380, 439 |
| Bst4CI | ACNGT | 1 cut(s) | 482 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 199 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 453 |
| BstF5I | GGATG | 1 cut(s) | 166 |
| BstMAI | GTCTC | 2 cut(s) | 104, 380 |
| BstNI | CCWGG | 4 cut(s) | 171, 350, 380, 439 |
| BstSCI | CCNGG | 4 cut(s) | 169, 348, 378, 437 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 1 cut(s) | 281 |
| BsuRI | GGCC | 1 cut(s) | 82 |
| BtsCI | GGATG | 1 cut(s) | 166 |
| CsiI | ACCWGGT | 1 cut(s) | 348 |
| Csp6I | GTAC | 3 cut(s) | 179, 385, 504 |
| CviJI | RGCY | 5 cut(s) | 82, 133, 272, 371, 557 |
| CviKI_1 | RGCY | 5 cut(s) | 82, 133, 272, 371, 557 |
| CviQI | GTAC | 3 cut(s) | 179, 385, 504 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 199 |
| EarI | CTCTTC | 2 cut(s) | 102, 199 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 453 |
| EcoRII | CCWGG | 4 cut(s) | 169, 348, 378, 437 |
| Esp3I | CGTCTC | 1 cut(s) | 380 |
| FaiI | YATR | 8 cut(s) | 41, 127, 144, 265, 282, 338, 492, 539 |
| FaqI | GGGAC | 1 cut(s) | 419 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 1 cut(s) | 173 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| FspBI | CTAG | 2 cut(s) | 204, 501 |
| GluI | GCNGC | 1 cut(s) | 270 |
| GsuI | CTGGAG | 3 cut(s) | 92, 192, 362 |
| HaeIII | GGCC | 1 cut(s) | 82 |
| HincII | GTYRAC | 1 cut(s) | 478 |
| HindII | GTYRAC | 1 cut(s) | 478 |
| HinfI | GANTC | 2 cut(s) | 318, 519 |
| HphI | GGTGA | 2 cut(s) | 355, 475 |
| Hpy166II | GTNNAC | 3 cut(s) | 32, 346, 478 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy188III | TCNNGA | 1 cut(s) | 71 |
| Hpy8I | GTNNAC | 3 cut(s) | 32, 346, 478 |
| HpyAV | CCTTC | 3 cut(s) | 7, 264, 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 482 |
| HpyCH4IV | ACGT | 1 cut(s) | 334 |
| HpyCH4V | TGCA | 2 cut(s) | 455, 485 |
| HpySE526I | ACGT | 1 cut(s) | 334 |
| LmnI | GCTCC | 1 cut(s) | 554 |
| Lsp1109I | GCAGC | 1 cut(s) | 281 |
| LweI | GCATC | 3 cut(s) | 151, 190, 403 |
| MabI | ACCWGGT | 1 cut(s) | 348 |
| MaeI | CTAG | 2 cut(s) | 204, 501 |
| MaeII | ACGT | 1 cut(s) | 334 |
| MboII | GAAGA | 3 cut(s) | 119, 186, 478 |
| MfeI | CAATTG | 2 cut(s) | 25, 114 |
| MluCI | AATT | 4 cut(s) | 25, 114, 259, 283 |
| MlyI | GAGTC | 2 cut(s) | 327, 528 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 7 cut(s) | 78, 141, 334, 384, 410, 456, 568 |
| MseI | TTAA | 1 cut(s) | 471 |
| MspR9I | CCNGG | 4 cut(s) | 171, 350, 380, 439 |
| MunI | CAATTG | 2 cut(s) | 25, 114 |
| MvaI | CCWGG | 4 cut(s) | 171, 350, 380, 439 |
| NlaIV | GGNNCC | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 264 |
| PfoI | TCCNGGA | 1 cut(s) | 378 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PleI | GAGTC | 2 cut(s) | 326, 527 |
| PpsI | GAGTC | 2 cut(s) | 326, 527 |
| PshBI | ATTAAT | 1 cut(s) | 471 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| Psp6I | CCWGG | 4 cut(s) | 169, 348, 378, 437 |
| PspGI | CCWGG | 4 cut(s) | 169, 348, 378, 437 |
| PspN4I | GGNNCC | 1 cut(s) | 556 |
| RsaI | GTAC | 3 cut(s) | 180, 386, 505 |
| RsaNI | GTAC | 3 cut(s) | 179, 385, 504 |
| SaqAI | TTAA | 1 cut(s) | 471 |
| SatI | GCNGC | 1 cut(s) | 270 |
| ScaI | AGTACT | 1 cut(s) | 505 |
| SchI | GAGTC | 2 cut(s) | 327, 528 |
| ScrFI | CCNGG | 4 cut(s) | 171, 350, 380, 439 |
| SetI | ASST | 9 cut(s) | 18, 37, 126, 209, 274, 337, 345, 354, 448 |
| SexAI | ACCWGGT | 1 cut(s) | 348 |
| SfaNI | GCATC | 3 cut(s) | 151, 190, 403 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SpeI | ACTAGT | 1 cut(s) | 500 |
| Sse9I | AATT | 4 cut(s) | 25, 114, 259, 283 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SspMI | CTAG | 2 cut(s) | 204, 501 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyD4I | CCNGG | 4 cut(s) | 169, 348, 378, 437 |
| TaaI | ACNGT | 1 cut(s) | 482 |
| TaiI | ACGT | 1 cut(s) | 337 |
| TasI | AATT | 4 cut(s) | 25, 114, 259, 283 |
| TatI | WGTACW | 1 cut(s) | 503 |
| Tru1I | TTAA | 1 cut(s) | 471 |
| Tru9I | TTAA | 1 cut(s) | 471 |
| TseI | GCWGC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 1 cut(s) | 479 |
| TspGWI | ACGGA | 3 cut(s) | 129, 196, 518 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 264 |
| VspI | ATTAAT | 1 cut(s) | 471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 453 |
| XspI | CTAG | 2 cut(s) | 204, 501 |
| ZrmI | AGTACT | 1 cut(s) | 505 |