Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 815 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1311 |
| AccI | GTMKAC | 4 cut(s) | 377, 494, 1161, 1721 |
| AccII | CGCG | 1 cut(s) | 40 |
| AccIII | TCCGGA | 1 cut(s) | 28 |
| AciI | CCGC | 8 cut(s) | 38, 45, 123, 209, 595, 928, 1190, 1431 |
| AclWI | GGATC | 7 cut(s) | 20, 272, 304, 398, 880, 997, 1292 |
| AcoI | YGGCCR | 4 cut(s) | 35, 1440, 1567, 1653 |
| AcuI | CTGAAG | 1 cut(s) | 840 |
| AdeI | CACNNNGTG | 1 cut(s) | 1741 |
| AfaI | GTAC | 3 cut(s) | 248, 1390, 1734 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 44, 264, 889, 1218, 1311, 1648 |
| AflIII | ACRYGT | 1 cut(s) | 249 |
| AgeI | ACCGGT | 2 cut(s) | 872, 1724 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 373, 490 |
| AjnI | CCWGG | 4 cut(s) | 192, 443, 560, 1799 |
| AluBI | AGCT | 7 cut(s) | 241, 349, 466, 662, 1363, 1757, 1909 |
| AluI | AGCT | 7 cut(s) | 241, 349, 466, 662, 1363, 1757, 1909 |
| Alw26I | GTCTC | 4 cut(s) | 58, 136, 1037, 1590 |
| AlwI | GGATC | 7 cut(s) | 20, 272, 304, 398, 880, 997, 1292 |
| Aor13HI | TCCGGA | 1 cut(s) | 28 |
| ApeKI | GCWGC | 7 cut(s) | 284, 316, 346, 659, 833, 1673, 1757 |
| AsiGI | ACCGGT | 2 cut(s) | 872, 1724 |
| AspLEI | GCGC | 2 cut(s) | 461, 578 |
| AsuC2I | CCSGG | 2 cut(s) | 729, 890 |
| AsuHPI | GGTGA | 2 cut(s) | 1739, 1811 |
| BalI | TGGCCA | 2 cut(s) | 1569, 1655 |
| BauI | CACGAG | 1 cut(s) | 1143 |
| BbvI | GCAGC | 7 cut(s) | 271, 303, 358, 671, 845, 1660, 1744 |
| BccI | CCATC | 1 cut(s) | 1659 |
| BceAI | ACGGC | 1 cut(s) | 1427 |
| BciT130I | CCWGG | 4 cut(s) | 194, 445, 562, 1801 |
| BclI | TGATCA | 2 cut(s) | 610, 741 |
| BcnI | CCSGG | 2 cut(s) | 729, 890 |
| BcoDI | GTCTC | 4 cut(s) | 58, 136, 1037, 1590 |
| BfaI | CTAG | 4 cut(s) | 987, 1386, 1695, 1878 |
| BfmI | CTRYAG | 1 cut(s) | 1758 |
| BfoI | RGCGCY | 2 cut(s) | 462, 579 |
| BfuAI | ACCTGC | 1 cut(s) | 815 |
| BglII | AGATCT | 1 cut(s) | 520 |
| BisI | GCNGC | 8 cut(s) | 38, 285, 317, 347, 660, 834, 1674, 1758 |
| BlpI | GCTNAGC | 1 cut(s) | 462 |
| BlsI | GCNGC | 8 cut(s) | 39, 286, 318, 348, 661, 835, 1675, 1759 |
| BmcAI | AGTACT | 1 cut(s) | 1390 |
| Bme1390I | CCNGG | 6 cut(s) | 194, 445, 562, 729, 890, 1801 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 373, 490 |
| BmiI | GGNNCC | 6 cut(s) | 22, 93, 171, 851, 926, 951 |
| BmrFI | CCNGG | 6 cut(s) | 194, 445, 562, 729, 890, 1801 |
| BmsI | GCATC | 1 cut(s) | 799 |
| BoxI | GACNNNNGTC | 3 cut(s) | 383, 500, 1117 |
| BpmI | CTGGAG | 1 cut(s) | 1614 |
| Bpu10I | CCTNAGC | 1 cut(s) | 579 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 462 |
| BpuMI | CCSGG | 2 cut(s) | 729, 890 |
| BsaAI | YACGTR | 1 cut(s) | 250 |
| BsaI | GGTCTC | 3 cut(s) | 58, 136, 1590 |
| BsaJI | CCNNGG | 4 cut(s) | 444, 561, 727, 1800 |
| BsaWI | WCCGGW | 8 cut(s) | 13, 28, 49, 127, 228, 852, 872, 1724 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1015, 1045 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 44, 264, 889, 1218, 1311, 1648 |
| Bse118I | RCCGGY | 5 cut(s) | 33, 83, 161, 872, 1724 |
| Bse1I | ACTGG | 5 cut(s) | 851, 1140, 1396, 1597, 1865 |
| Bse3DI | GCAATG | 1 cut(s) | 1285 |
| BseAI | TCCGGA | 1 cut(s) | 28 |
| BseBI | CCWGG | 4 cut(s) | 194, 445, 562, 1801 |
| BseDI | CCNNGG | 4 cut(s) | 444, 561, 727, 1800 |
| BseGI | GGATG | 1 cut(s) | 1670 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 44, 264, 889, 1218, 1311, 1648 |
| BseMI | GCAATG | 1 cut(s) | 1285 |
| BseMII | CTCAG | 2 cut(s) | 228, 453 |
| BseNI | ACTGG | 5 cut(s) | 851, 1140, 1396, 1597, 1865 |
| BseX3I | CGGCCG | 1 cut(s) | 35 |
| BseXI | GCAGC | 7 cut(s) | 271, 303, 358, 671, 845, 1660, 1744 |
| BsgI | GTGCAG | 2 cut(s) | 270, 302 |
| Bsh1236I | CGCG | 1 cut(s) | 40 |
| Bsh1285I | CGRYCG | 1 cut(s) | 38 |
| BshTI | ACCGGT | 2 cut(s) | 872, 1724 |
| BsiEI | CGRYCG | 1 cut(s) | 38 |
| BslFI | GGGAC | 8 cut(s) | 34, 77, 155, 866, 910, 935, 1495, 1625 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 44, 264, 889, 1218, 1311, 1648 |
| BsmAI | GTCTC | 4 cut(s) | 58, 136, 1037, 1590 |
| BsmFI | GGGAC | 8 cut(s) | 34, 77, 155, 866, 910, 935, 1495, 1625 |
| BsmI | GAATGC | 1 cut(s) | 1819 |
| Bso31I | GGTCTC | 3 cut(s) | 58, 136, 1590 |
| Bsp13I | TCCGGA | 1 cut(s) | 28 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 462 |
| BspACI | CCGC | 8 cut(s) | 38, 45, 123, 209, 595, 928, 1190, 1431 |
| BspCNI | CTCAG | 2 cut(s) | 229, 454 |
| BspEI | TCCGGA | 1 cut(s) | 28 |
| BspFNI | CGCG | 1 cut(s) | 40 |
| BspLI | GGNNCC | 6 cut(s) | 22, 93, 171, 851, 926, 951 |
| BspMAI | CTGCAG | 1 cut(s) | 1762 |
| BspMI | ACCTGC | 1 cut(s) | 815 |
| BspPI | GGATC | 7 cut(s) | 20, 272, 304, 398, 880, 997, 1292 |
| BspTNI | GGTCTC | 3 cut(s) | 58, 136, 1590 |
| BsrDI | GCAATG | 1 cut(s) | 1285 |
| BsrFI | RCCGGY | 5 cut(s) | 33, 83, 161, 872, 1724 |
| BsrI | ACTGG | 5 cut(s) | 851, 1140, 1396, 1597, 1865 |
| BssAI | RCCGGY | 5 cut(s) | 33, 83, 161, 872, 1724 |
| BssECI | CCNNGG | 4 cut(s) | 444, 561, 727, 1800 |
| BssNAI | GTATAC | 1 cut(s) | 1722 |
| BssSI | CACGAG | 1 cut(s) | 1143 |
| Bst1107I | GTATAC | 1 cut(s) | 1722 |
| Bst2BI | CACGAG | 1 cut(s) | 1143 |
| Bst2UI | CCWGG | 4 cut(s) | 194, 445, 562, 1801 |
| Bst4CI | ACNGT | 8 cut(s) | 112, 190, 605, 736, 924, 1354, 1739, 1851 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1418 |
| BstBAI | YACGTR | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 8 cut(s) | 441, 558, 587, 718, 806, 1423, 1552, 1671 |
| BstDEI | CTNAG | 3 cut(s) | 237, 462, 579 |
| BstF5I | GGATG | 1 cut(s) | 1670 |
| BstFNI | CGCG | 1 cut(s) | 40 |
| BstH2I | RGCGCY | 2 cut(s) | 462, 579 |
| BstHHI | GCGC | 2 cut(s) | 461, 578 |
| BstMAI | GTCTC | 4 cut(s) | 58, 136, 1037, 1590 |
| BstMCI | CGRYCG | 1 cut(s) | 38 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 582, 717, 830, 1418, 1439, 1709 |
| BstNI | CCWGG | 4 cut(s) | 194, 445, 562, 1801 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 383, 500, 1117 |
| BstSCI | CCNGG | 6 cut(s) | 192, 443, 560, 727, 888, 1799 |
| BstSFI | CTRYAG | 1 cut(s) | 1758 |
| BstUI | CGCG | 1 cut(s) | 40 |
| BstV1I | GCAGC | 7 cut(s) | 271, 303, 358, 671, 845, 1660, 1744 |
| BstX2I | RGATCY | 6 cut(s) | 277, 309, 403, 520, 1002, 1284 |
| BstYI | RGATCY | 6 cut(s) | 277, 309, 403, 520, 1002, 1284 |
| BstZ17I | GTATAC | 1 cut(s) | 1722 |
| BstZI | CGGCCG | 1 cut(s) | 35 |
| BtsCI | GGATG | 1 cut(s) | 1670 |
| BtsIMutI | CAGTG | 4 cut(s) | 816, 1133, 1350, 1735 |
| BveI | ACCTGC | 1 cut(s) | 815 |
| Cac8I | GCNNGC | 8 cut(s) | 441, 558, 587, 718, 806, 1423, 1552, 1671 |
| CfoI | GCGC | 2 cut(s) | 461, 578 |
| Cfr10I | RCCGGY | 5 cut(s) | 33, 83, 161, 872, 1724 |
| CpoI | CGGWCCG | 3 cut(s) | 31, 47, 125 |
| CseI | GACGC | 1 cut(s) | 1569 |
| Csp6I | GTAC | 3 cut(s) | 247, 1389, 1733 |
| CspAI | ACCGGT | 2 cut(s) | 872, 1724 |
| CspI | CGGWCCG | 3 cut(s) | 31, 47, 125 |
| CviAII | CATG | 4 cut(s) | 708, 1090, 1418, 1885 |
| CviQI | GTAC | 3 cut(s) | 247, 1389, 1733 |
| DdeI | CTNAG | 3 cut(s) | 237, 462, 579 |
| DraI | TTTAAA | 1 cut(s) | 1063 |
| DraIII | CACNNNGTG | 1 cut(s) | 1741 |
| DriI | GACNNNNNGTC | 2 cut(s) | 373, 490 |
| EaeI | YGGCCR | 4 cut(s) | 35, 1440, 1567, 1653 |
| EagI | CGGCCG | 1 cut(s) | 35 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 373, 490 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| EclXI | CGGCCG | 1 cut(s) | 35 |
| Eco147I | AGGCCT | 1 cut(s) | 1622 |
| Eco31I | GGTCTC | 3 cut(s) | 58, 136, 1590 |
| Eco32I | GATATC | 1 cut(s) | 705 |
| Eco52I | CGGCCG | 1 cut(s) | 35 |
| Eco57I | CTGAAG | 1 cut(s) | 840 |
| EcoRII | CCWGG | 4 cut(s) | 192, 443, 560, 1799 |
| EcoRV | GATATC | 1 cut(s) | 705 |
| FaeI | CATG | 4 cut(s) | 711, 1093, 1421, 1888 |
| FaqI | GGGAC | 8 cut(s) | 34, 77, 155, 866, 910, 935, 1495, 1625 |
| FatI | CATG | 4 cut(s) | 707, 1089, 1417, 1884 |
| FauI | CCCGC | 1 cut(s) | 935 |
| FbaI | TGATCA | 2 cut(s) | 610, 741 |
| FblI | GTMKAC | 4 cut(s) | 377, 494, 1161, 1721 |
| Fnu4HI | GCNGC | 8 cut(s) | 38, 285, 317, 347, 660, 834, 1674, 1758 |
| FokI | GGATG | 1 cut(s) | 1677 |
| Fsp4HI | GCNGC | 8 cut(s) | 38, 285, 317, 347, 660, 834, 1674, 1758 |
| FspBI | CTAG | 4 cut(s) | 987, 1386, 1695, 1878 |
| GlaI | GCGC | 2 cut(s) | 460, 577 |
| GluI | GCNGC | 8 cut(s) | 38, 285, 317, 347, 660, 834, 1674, 1758 |
| GsuI | CTGGAG | 1 cut(s) | 1614 |
| HaeII | RGCGCY | 2 cut(s) | 462, 579 |
| HgaI | GACGC | 1 cut(s) | 1569 |
| HhaI | GCGC | 2 cut(s) | 461, 578 |
| Hin1II | CATG | 4 cut(s) | 711, 1093, 1421, 1888 |
| Hin6I | GCGC | 2 cut(s) | 459, 576 |
| HinP1I | GCGC | 2 cut(s) | 459, 576 |
| HincII | GTYRAC | 3 cut(s) | 378, 495, 693 |
| HindII | GTYRAC | 3 cut(s) | 378, 495, 693 |
| HindIII | AAGCTT | 1 cut(s) | 1907 |
| HinfI | GANTC | 5 cut(s) | 374, 491, 1315, 1382, 1403 |
| HpaI | GTTAAC | 1 cut(s) | 693 |
| HphI | GGTGA | 2 cut(s) | 1739, 1811 |
| Hpy166II | GTNNAC | 9 cut(s) | 226, 378, 495, 693, 983, 1162, 1584, 1722, 1735 |
| Hpy188I | TCNGA | 7 cut(s) | 397, 425, 436, 514, 542, 1372, 1455 |
| Hpy188III | TCNNGA | 8 cut(s) | 29, 62, 140, 215, 388, 505, 883, 952 |
| Hpy8I | GTNNAC | 9 cut(s) | 226, 378, 495, 693, 983, 1162, 1584, 1722, 1735 |
| Hpy99I | CGWCG | 7 cut(s) | 382, 401, 422, 491, 499, 518, 539 |
| HpyCH4III | ACNGT | 8 cut(s) | 112, 190, 605, 736, 924, 1354, 1739, 1851 |
| HpyCH4IV | ACGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 8 cut(s) | 287, 319, 711, 916, 1447, 1470, 1538, 1760 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 582, 717, 830, 1418, 1439, 1709 |
| HpyF3I | CTNAG | 3 cut(s) | 237, 462, 579 |
| HpySE526I | ACGT | 1 cut(s) | 249 |
| Hsp92II | CATG | 4 cut(s) | 711, 1093, 1421, 1888 |
| HspAI | GCGC | 2 cut(s) | 459, 576 |
| Kpn2I | TCCGGA | 1 cut(s) | 28 |
| Ksp22I | TGATCA | 2 cut(s) | 610, 741 |
| KspAI | GTTAAC | 1 cut(s) | 693 |
| LmnI | GCTCC | 1 cut(s) | 1042 |
| Lsp1109I | GCAGC | 7 cut(s) | 271, 303, 358, 671, 845, 1660, 1744 |
| LweI | GCATC | 1 cut(s) | 799 |
| MaeI | CTAG | 4 cut(s) | 987, 1386, 1695, 1878 |
| MaeII | ACGT | 1 cut(s) | 249 |
| MaeIII | GTNAC | 3 cut(s) | 814, 1333, 1866 |
| MboII | GAAGA | 5 cut(s) | 281, 413, 530, 1012, 1679 |
| MflI | RGATCY | 6 cut(s) | 277, 309, 403, 520, 1002, 1284 |
| MlsI | TGGCCA | 2 cut(s) | 1569, 1655 |
| MluCI | AATT | 3 cut(s) | 259, 1272, 1843 |
| MluNI | TGGCCA | 2 cut(s) | 1569, 1655 |
| MlyI | GAGTC | 3 cut(s) | 383, 500, 1376 |
| MmeI | TCCRAC | 3 cut(s) | 420, 537, 1715 |
| Mox20I | TGGCCA | 2 cut(s) | 1569, 1655 |
| MroI | TCCGGA | 1 cut(s) | 28 |
| MscI | TGGCCA | 2 cut(s) | 1569, 1655 |
| MseI | TTAA | 4 cut(s) | 692, 1062, 1293, 1530 |
| Msp20I | TGGCCA | 2 cut(s) | 1569, 1655 |
| MspA1I | CMGCKG | 3 cut(s) | 662, 1190, 1433 |
| MspR9I | CCNGG | 6 cut(s) | 194, 445, 562, 729, 890, 1801 |
| MssI | GTTTAAAC | 1 cut(s) | 1063 |
| Mva1269I | GAATGC | 1 cut(s) | 1819 |
| MvaI | CCWGG | 4 cut(s) | 194, 445, 562, 1801 |
| MvnI | CGCG | 1 cut(s) | 40 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 582, 717, 830, 1418, 1439, 1709 |
| NciI | CCSGG | 2 cut(s) | 729, 890 |
| NlaIII | CATG | 4 cut(s) | 711, 1093, 1421, 1888 |
| NlaIV | GGNNCC | 6 cut(s) | 22, 93, 171, 851, 926, 951 |
| NmuCI | GTSAC | 1 cut(s) | 814 |
| PceI | AGGCCT | 1 cut(s) | 1622 |
| PctI | GAATGC | 1 cut(s) | 1819 |
| PfeI | GAWTC | 2 cut(s) | 1315, 1403 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1311 |
| PinAI | ACCGGT | 2 cut(s) | 872, 1724 |
| PkrI | GCNGC | 8 cut(s) | 39, 286, 318, 348, 661, 835, 1675, 1759 |
| PleI | GAGTC | 3 cut(s) | 382, 499, 1376 |
| PmeI | GTTTAAAC | 1 cut(s) | 1063 |
| PpsI | GAGTC | 3 cut(s) | 382, 499, 1376 |
| Ppu21I | YACGTR | 1 cut(s) | 250 |
| PshAI | GACNNNNGTC | 3 cut(s) | 383, 500, 1117 |
| Psp6I | CCWGG | 4 cut(s) | 192, 443, 560, 1799 |
| PspGI | CCWGG | 4 cut(s) | 192, 443, 560, 1799 |
| PspN4I | GGNNCC | 6 cut(s) | 22, 93, 171, 851, 926, 951 |
| PstI | CTGCAG | 1 cut(s) | 1762 |
| PsuI | RGATCY | 6 cut(s) | 277, 309, 403, 520, 1002, 1284 |
| PvuII | CAGCTG | 1 cut(s) | 662 |
| RsaI | GTAC | 3 cut(s) | 248, 1390, 1734 |
| RsaNI | GTAC | 3 cut(s) | 247, 1389, 1733 |
| Rsr2I | CGGWCCG | 3 cut(s) | 31, 47, 125 |
| RsrII | CGGWCCG | 3 cut(s) | 31, 47, 125 |
| SalI | GTCGAC | 2 cut(s) | 376, 493 |
| SaqAI | TTAA | 4 cut(s) | 692, 1062, 1293, 1530 |
| SatI | GCNGC | 8 cut(s) | 38, 285, 317, 347, 660, 834, 1674, 1758 |
| ScaI | AGTACT | 1 cut(s) | 1390 |
| SchI | GAGTC | 3 cut(s) | 383, 500, 1376 |
| ScrFI | CCNGG | 6 cut(s) | 194, 445, 562, 729, 890, 1801 |
| SfaNI | GCATC | 1 cut(s) | 799 |
| SfcI | CTRYAG | 1 cut(s) | 1758 |
| Sse9I | AATT | 3 cut(s) | 259, 1272, 1843 |
| SseBI | AGGCCT | 1 cut(s) | 1622 |
| SsiI | CCGC | 8 cut(s) | 38, 45, 123, 209, 595, 928, 1190, 1431 |
| SspI | AATATT | 1 cut(s) | 1684 |
| SspMI | CTAG | 4 cut(s) | 987, 1386, 1695, 1878 |
| StuI | AGGCCT | 1 cut(s) | 1622 |
| StyD4I | CCNGG | 6 cut(s) | 192, 443, 560, 727, 888, 1799 |
| TaaI | ACNGT | 8 cut(s) | 112, 190, 605, 736, 924, 1354, 1739, 1851 |
| TaiI | ACGT | 1 cut(s) | 252 |
| TaqI | TCGA | 7 cut(s) | 377, 494, 552, 1097, 1339, 1506, 1793 |
| TaqII | GACCGA | 5 cut(s) | 20, 38, 79, 157, 937 |
| TasI | AATT | 3 cut(s) | 259, 1272, 1843 |
| TatI | WGTACW | 1 cut(s) | 1388 |
| TauI | GCSGC | 1 cut(s) | 40 |
| TfiI | GAWTC | 2 cut(s) | 1315, 1403 |
| Tru1I | TTAA | 4 cut(s) | 692, 1062, 1293, 1530 |
| Tru9I | TTAA | 4 cut(s) | 692, 1062, 1293, 1530 |
| TscAI | CASTG | 4 cut(s) | 823, 1140, 1357, 1742 |
| TseFI | GTSAC | 1 cut(s) | 814 |
| TseI | GCWGC | 7 cut(s) | 284, 316, 346, 659, 833, 1673, 1757 |
| Tsp45I | GTSAC | 1 cut(s) | 814 |
| TspDTI | ATGAA | 3 cut(s) | 116, 194, 1406 |
| TspGWI | ACGGA | 2 cut(s) | 406, 523 |
| TspRI | CASTG | 4 cut(s) | 823, 1140, 1357, 1742 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1311 |
| XmiI | GTMKAC | 4 cut(s) | 377, 494, 1161, 1721 |
| XspI | CTAG | 4 cut(s) | 987, 1386, 1695, 1878 |
| ZrmI | AGTACT | 1 cut(s) | 1390 |