Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Acc16I | TGCGCA | 1 cut(s) | 881 |
| Acc36I | ACCTGC | 2 cut(s) | 67, 88 |
| AciI | CCGC | 2 cut(s) | 53, 95 |
| AclWI | GGATC | 1 cut(s) | 123 |
| AcsI | RAATTY | 1 cut(s) | 813 |
| AfaI | GTAC | 4 cut(s) | 61, 189, 243, 871 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 968 |
| AgeI | ACCGGT | 1 cut(s) | 9 |
| AgsI | TTSAA | 4 cut(s) | 128, 158, 237, 739 |
| AjnI | CCWGG | 1 cut(s) | 110 |
| AluBI | AGCT | 4 cut(s) | 41, 380, 540, 575 |
| AluI | AGCT | 4 cut(s) | 41, 380, 540, 575 |
| Alw26I | GTCTC | 3 cut(s) | 299, 604, 834 |
| AlwI | GGATC | 1 cut(s) | 123 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 898 |
| AoxI | GGCC | 3 cut(s) | 92, 207, 981 |
| ApeKI | GCWGC | 4 cut(s) | 24, 437, 575, 1067 |
| ApoI | RAATTY | 1 cut(s) | 813 |
| AseI | ATTAAT | 2 cut(s) | 497, 701 |
| AsiGI | ACCGGT | 1 cut(s) | 9 |
| AspLEI | GCGC | 1 cut(s) | 882 |
| AspS9I | GGNCC | 1 cut(s) | 92 |
| AsuC2I | CCSGG | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 754, 773, 783 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 861, 894 |
| BanII | GRGCYC | 1 cut(s) | 328 |
| BbvI | GCAGC | 4 cut(s) | 11, 424, 562, 1054 |
| BccI | CCATC | 1 cut(s) | 629 |
| BciT130I | CCWGG | 1 cut(s) | 112 |
| BciVI | GTATCC | 2 cut(s) | 242, 1003 |
| BcnI | CCSGG | 1 cut(s) | 57 |
| BcoDI | GTCTC | 3 cut(s) | 299, 604, 834 |
| BfaI | CTAG | 2 cut(s) | 272, 966 |
| BfmI | CTRYAG | 2 cut(s) | 416, 1068 |
| BfuAI | ACCTGC | 2 cut(s) | 67, 88 |
| BfuI | GTATCC | 2 cut(s) | 242, 1003 |
| BglII | AGATCT | 1 cut(s) | 652 |
| BisI | GCNGC | 5 cut(s) | 25, 95, 438, 576, 1068 |
| BlsI | GCNGC | 5 cut(s) | 26, 96, 439, 577, 1069 |
| BmcAI | AGTACT | 1 cut(s) | 243 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 112 |
| BmgT120I | GGNCC | 1 cut(s) | 92 |
| BmiI | GGNNCC | 3 cut(s) | 93, 202, 327 |
| BmrFI | CCNGG | 2 cut(s) | 57, 112 |
| BmrI | ACTGGG | 1 cut(s) | 254 |
| BmuI | ACTGGG | 1 cut(s) | 254 |
| Bpu10I | CCTNAGC | 2 cut(s) | 465, 513 |
| BpuEI | CTTGAG | 1 cut(s) | 741 |
| BpuMI | CCSGG | 1 cut(s) | 57 |
| BsaI | GGTCTC | 2 cut(s) | 299, 834 |
| BsaJI | CCNNGG | 6 cut(s) | 111, 196, 204, 289, 301, 941 |
| BsaWI | WCCGGW | 1 cut(s) | 9 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 185, 215, 812, 842, 1014, 1044 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 968 |
| Bse118I | RCCGGY | 1 cut(s) | 9 |
| Bse1I | ACTGG | 2 cut(s) | 249, 599 |
| BseBI | CCWGG | 1 cut(s) | 112 |
| BseDI | CCNNGG | 6 cut(s) | 111, 196, 204, 289, 301, 941 |
| BseGI | GGATG | 2 cut(s) | 640, 716 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 968 |
| BseMII | CTCAG | 2 cut(s) | 527, 890 |
| BseNI | ACTGG | 2 cut(s) | 249, 599 |
| BseRI | GAGGAG | 6 cut(s) | 214, 287, 404, 443, 644, 951 |
| BseXI | GCAGC | 4 cut(s) | 11, 424, 562, 1054 |
| BshFI | GGCC | 3 cut(s) | 94, 209, 983 |
| BshTI | ACCGGT | 1 cut(s) | 9 |
| BsiSI | CCGG | 2 cut(s) | 10, 57 |
| BslFI | GGGAC | 1 cut(s) | 606 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 968 |
| BsmAI | GTCTC | 3 cut(s) | 299, 604, 834 |
| BsmFI | GGGAC | 1 cut(s) | 606 |
| BsmI | GAATGC | 1 cut(s) | 223 |
| BsnI | GGCC | 3 cut(s) | 94, 209, 983 |
| Bso31I | GGTCTC | 2 cut(s) | 299, 834 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp143I | GATC | 2 cut(s) | 115, 652 |
| BspACI | CCGC | 2 cut(s) | 53, 95 |
| BspANI | GGCC | 3 cut(s) | 94, 209, 983 |
| BspCNI | CTCAG | 2 cut(s) | 526, 891 |
| BspLI | GGNNCC | 3 cut(s) | 93, 202, 327 |
| BspMAI | CTGCAG | 1 cut(s) | 1072 |
| BspMI | ACCTGC | 2 cut(s) | 67, 88 |
| BspPI | GGATC | 1 cut(s) | 123 |
| BspTNI | GGTCTC | 2 cut(s) | 299, 834 |
| BsrFI | RCCGGY | 1 cut(s) | 9 |
| BsrI | ACTGG | 2 cut(s) | 249, 599 |
| BssAI | RCCGGY | 1 cut(s) | 9 |
| BssECI | CCNNGG | 6 cut(s) | 111, 196, 204, 289, 301, 941 |
| BssMI | GATC | 2 cut(s) | 115, 652 |
| BssT1I | CCWWGG | 4 cut(s) | 196, 289, 301, 941 |
| Bst2UI | CCWGG | 1 cut(s) | 112 |
| Bst4CI | ACNGT | 1 cut(s) | 64 |
| BstDEI | CTNAG | 3 cut(s) | 465, 513, 899 |
| BstF5I | GGATG | 2 cut(s) | 640, 716 |
| BstHHI | GCGC | 1 cut(s) | 882 |
| BstKTI | GATC | 2 cut(s) | 118, 655 |
| BstMAI | GTCTC | 3 cut(s) | 299, 604, 834 |
| BstMBI | GATC | 2 cut(s) | 115, 652 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 151, 572, 680 |
| BstNI | CCWGG | 1 cut(s) | 112 |
| BstSCI | CCNGG | 2 cut(s) | 55, 110 |
| BstSFI | CTRYAG | 2 cut(s) | 416, 1068 |
| BstV1I | GCAGC | 4 cut(s) | 11, 424, 562, 1054 |
| BstX2I | RGATCY | 1 cut(s) | 652 |
| BstYI | RGATCY | 1 cut(s) | 652 |
| BsuI | GTATCC | 2 cut(s) | 242, 1003 |
| BsuRI | GGCC | 3 cut(s) | 94, 209, 983 |
| BtsCI | GGATG | 2 cut(s) | 640, 716 |
| BtsIMutI | CAGTG | 1 cut(s) | 592 |
| BveI | ACCTGC | 2 cut(s) | 67, 88 |
| CaiI | CAGNNNCTG | 1 cut(s) | 898 |
| CfoI | GCGC | 1 cut(s) | 882 |
| Cfr10I | RCCGGY | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 1 cut(s) | 92 |
| Csp6I | GTAC | 4 cut(s) | 60, 188, 242, 870 |
| CspAI | ACCGGT | 1 cut(s) | 9 |
| CviAII | CATG | 4 cut(s) | 320, 470, 535, 951 |
| CviQI | GTAC | 4 cut(s) | 60, 188, 242, 870 |
| DdeI | CTNAG | 3 cut(s) | 465, 513, 899 |
| DpnI | GATC | 2 cut(s) | 117, 654 |
| DpnII | GATC | 2 cut(s) | 115, 652 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 4 cut(s) | 196, 289, 301, 941 |
| Eco24I | GRGCYC | 1 cut(s) | 328 |
| Eco31I | GGTCTC | 2 cut(s) | 299, 834 |
| Eco32I | GATATC | 1 cut(s) | 600 |
| EcoRII | CCWGG | 1 cut(s) | 110 |
| EcoRV | GATATC | 1 cut(s) | 600 |
| EcoT14I | CCWWGG | 4 cut(s) | 196, 289, 301, 941 |
| EcoT38I | GRGCYC | 1 cut(s) | 328 |
| ErhI | CCWWGG | 4 cut(s) | 196, 289, 301, 941 |
| FaeI | CATG | 4 cut(s) | 323, 473, 538, 954 |
| FaqI | GGGAC | 1 cut(s) | 606 |
| FatI | CATG | 4 cut(s) | 319, 469, 534, 950 |
| Fnu4HI | GCNGC | 5 cut(s) | 25, 95, 438, 576, 1068 |
| FokI | GGATG | 2 cut(s) | 647, 703 |
| FriOI | GRGCYC | 1 cut(s) | 328 |
| Fsp4HI | GCNGC | 5 cut(s) | 25, 95, 438, 576, 1068 |
| FspBI | CTAG | 2 cut(s) | 272, 966 |
| FspI | TGCGCA | 1 cut(s) | 881 |
| GlaI | GCGC | 1 cut(s) | 881 |
| GluI | GCNGC | 5 cut(s) | 25, 95, 438, 576, 1068 |
| HaeIII | GGCC | 3 cut(s) | 94, 209, 983 |
| HapII | CCGG | 2 cut(s) | 10, 57 |
| HhaI | GCGC | 1 cut(s) | 882 |
| Hin1II | CATG | 4 cut(s) | 323, 473, 538, 954 |
| Hin6I | GCGC | 1 cut(s) | 880 |
| HinP1I | GCGC | 1 cut(s) | 880 |
| HindIII | AAGCTT | 1 cut(s) | 378 |
| HinfI | GANTC | 2 cut(s) | 307, 589 |
| HpaII | CCGG | 2 cut(s) | 10, 57 |
| HphI | GGTGA | 4 cut(s) | 16, 754, 773, 783 |
| Hpy166II | GTNNAC | 2 cut(s) | 7, 398 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy188III | TCNNGA | 3 cut(s) | 650, 915, 1007 |
| Hpy8I | GTNNAC | 2 cut(s) | 7, 398 |
| HpyAV | CCTTC | 2 cut(s) | 723, 798 |
| HpyCH4III | ACNGT | 1 cut(s) | 64 |
| HpyCH4IV | ACGT | 1 cut(s) | 919 |
| HpyCH4V | TGCA | 2 cut(s) | 856, 1070 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 151, 572, 680 |
| HpyF3I | CTNAG | 3 cut(s) | 465, 513, 899 |
| HpySE526I | ACGT | 1 cut(s) | 919 |
| Hsp92II | CATG | 4 cut(s) | 323, 473, 538, 954 |
| HspAI | GCGC | 1 cut(s) | 880 |
| Kzo9I | GATC | 2 cut(s) | 115, 652 |
| LmnI | GCTCC | 4 cut(s) | 38, 206, 331, 555 |
| Lsp1109I | GCAGC | 4 cut(s) | 11, 424, 562, 1054 |
| MaeI | CTAG | 2 cut(s) | 272, 966 |
| MaeII | ACGT | 1 cut(s) | 919 |
| MaeIII | GTNAC | 1 cut(s) | 894 |
| MalI | GATC | 2 cut(s) | 117, 654 |
| MboI | GATC | 2 cut(s) | 115, 652 |
| MboII | GAAGA | 1 cut(s) | 116 |
| MflI | RGATCY | 1 cut(s) | 652 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MluCI | AATT | 3 cut(s) | 333, 702, 813 |
| MmeI | TCCRAC | 2 cut(s) | 674, 785 |
| MseI | TTAA | 4 cut(s) | 497, 701, 782, 1002 |
| MspI | CCGG | 2 cut(s) | 10, 57 |
| MspR9I | CCNGG | 2 cut(s) | 57, 112 |
| Mva1269I | GAATGC | 1 cut(s) | 223 |
| MvaI | CCWGG | 1 cut(s) | 112 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 151, 572, 680 |
| NciI | CCSGG | 1 cut(s) | 57 |
| NdeII | GATC | 2 cut(s) | 115, 652 |
| NlaIII | CATG | 4 cut(s) | 323, 473, 538, 954 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 202, 327 |
| NsbI | TGCGCA | 1 cut(s) | 881 |
| PctI | GAATGC | 1 cut(s) | 223 |
| PfeI | GAWTC | 2 cut(s) | 307, 589 |
| PflFI | GACNNNGTC | 1 cut(s) | 615 |
| PinAI | ACCGGT | 1 cut(s) | 9 |
| PkrI | GCNGC | 5 cut(s) | 26, 96, 439, 577, 1069 |
| PshBI | ATTAAT | 2 cut(s) | 497, 701 |
| Psp6I | CCWGG | 1 cut(s) | 110 |
| PspGI | CCWGG | 1 cut(s) | 110 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 202, 327 |
| PspPI | GGNCC | 1 cut(s) | 92 |
| PstI | CTGCAG | 1 cut(s) | 1072 |
| PstNI | CAGNNNCTG | 1 cut(s) | 898 |
| PsuI | RGATCY | 1 cut(s) | 652 |
| PsyI | GACNNNGTC | 1 cut(s) | 615 |
| RsaI | GTAC | 4 cut(s) | 61, 189, 243, 871 |
| RsaNI | GTAC | 4 cut(s) | 60, 188, 242, 870 |
| SaqAI | TTAA | 4 cut(s) | 497, 701, 782, 1002 |
| SatI | GCNGC | 5 cut(s) | 25, 95, 438, 576, 1068 |
| Sau3AI | GATC | 2 cut(s) | 115, 652 |
| Sau96I | GGNCC | 1 cut(s) | 92 |
| ScaI | AGTACT | 1 cut(s) | 243 |
| ScrFI | CCNGG | 2 cut(s) | 57, 112 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SfcI | CTRYAG | 2 cut(s) | 416, 1068 |
| SmlI | CTYRAG | 1 cut(s) | 756 |
| SmoI | CTYRAG | 1 cut(s) | 756 |
| Sse9I | AATT | 3 cut(s) | 333, 702, 813 |
| SsiI | CCGC | 2 cut(s) | 53, 95 |
| SspI | AATATT | 2 cut(s) | 19, 988 |
| SspMI | CTAG | 2 cut(s) | 272, 966 |
| StyD4I | CCNGG | 2 cut(s) | 55, 110 |
| StyI | CCWWGG | 4 cut(s) | 196, 289, 301, 941 |
| TaaI | ACNGT | 1 cut(s) | 64 |
| TaiI | ACGT | 1 cut(s) | 922 |
| TaqI | TCGA | 2 cut(s) | 118, 649 |
| TaqII | GACCGA | 1 cut(s) | 816 |
| TasI | AATT | 3 cut(s) | 333, 702, 813 |
| TatI | WGTACW | 1 cut(s) | 241 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 2 cut(s) | 307, 589 |
| Tru1I | TTAA | 4 cut(s) | 497, 701, 782, 1002 |
| Tru9I | TTAA | 4 cut(s) | 497, 701, 782, 1002 |
| TscAI | CASTG | 1 cut(s) | 599 |
| TseI | GCWGC | 4 cut(s) | 24, 437, 575, 1067 |
| TspDTI | ATGAA | 4 cut(s) | 119, 308, 326, 486 |
| TspRI | CASTG | 1 cut(s) | 599 |
| Tth111I | GACNNNGTC | 1 cut(s) | 615 |
| VspI | ATTAAT | 2 cut(s) | 497, 701 |
| XapI | RAATTY | 1 cut(s) | 813 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 948 |
| XspI | CTAG | 2 cut(s) | 272, 966 |
| ZrmI | AGTACT | 1 cut(s) | 243 |