Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 142 |
| Acc16I | TGCGCA | 1 cut(s) | 405 |
| Acc65I | GGTACC | 1 cut(s) | 196 |
| AccB1I | GGYRCC | 1 cut(s) | 196 |
| AciI | CCGC | 1 cut(s) | 500 |
| AclWI | GGATC | 1 cut(s) | 149 |
| AfaI | GTAC | 5 cut(s) | 120, 198, 504, 526, 741 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 526 |
| AgsI | TTSAA | 6 cut(s) | 193, 212, 321, 443, 509, 796 |
| AjnI | CCWGG | 5 cut(s) | 199, 271, 486, 579, 704 |
| AluBI | AGCT | 5 cut(s) | 49, 181, 306, 629, 671 |
| AluI | AGCT | 5 cut(s) | 49, 181, 306, 629, 671 |
| Alw26I | GTCTC | 2 cut(s) | 355, 600 |
| AlwI | GGATC | 1 cut(s) | 149 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 487 |
| AoxI | GGCC | 3 cut(s) | 274, 355, 597 |
| ApeKI | GCWGC | 4 cut(s) | 303, 478, 551, 554 |
| Asp718I | GGTACC | 1 cut(s) | 196 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AspS9I | GGNCC | 1 cut(s) | 598 |
| AsuC2I | CCSGG | 1 cut(s) | 615 |
| AxyI | CCTNAGG | 1 cut(s) | 108 |
| BanI | GGYRCC | 1 cut(s) | 196 |
| BbvI | GCAGC | 4 cut(s) | 315, 490, 538, 541 |
| BciT130I | CCWGG | 5 cut(s) | 201, 273, 488, 581, 706 |
| BcnI | CCSGG | 1 cut(s) | 615 |
| BcoDI | GTCTC | 2 cut(s) | 355, 600 |
| BfaI | CTAG | 2 cut(s) | 69, 668 |
| BisI | GCNGC | 4 cut(s) | 304, 479, 552, 555 |
| BlsI | GCNGC | 4 cut(s) | 305, 480, 553, 556 |
| Bme1390I | CCNGG | 6 cut(s) | 201, 273, 488, 581, 615, 706 |
| BmgT120I | GGNCC | 1 cut(s) | 598 |
| BmiI | GGNNCC | 2 cut(s) | 198, 720 |
| BmrFI | CCNGG | 6 cut(s) | 201, 273, 488, 581, 615, 706 |
| BmsI | GCATC | 5 cut(s) | 20, 118, 320, 364, 585 |
| BpmI | CTGGAG | 2 cut(s) | 171, 727 |
| Bpu10I | CCTNAGC | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 2 cut(s) | 355, 480 |
| BpuMI | CCSGG | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 2 cut(s) | 200, 638 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 526 |
| Bse1I | ACTGG | 1 cut(s) | 154 |
| Bse21I | CCTNAGG | 1 cut(s) | 108 |
| BseBI | CCWGG | 5 cut(s) | 201, 273, 488, 581, 706 |
| BseDI | CCNNGG | 2 cut(s) | 200, 638 |
| BseGI | GGATG | 4 cut(s) | 335, 379, 576, 589 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 526 |
| BseMII | CTCAG | 4 cut(s) | 122, 350, 366, 392 |
| BseNI | ACTGG | 1 cut(s) | 154 |
| BseXI | GCAGC | 4 cut(s) | 315, 490, 538, 541 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| BshFI | GGCC | 3 cut(s) | 276, 357, 599 |
| BshNI | GGYRCC | 1 cut(s) | 196 |
| BsiSI | CCGG | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 526 |
| BsmAI | GTCTC | 2 cut(s) | 355, 600 |
| BsmI | GAATGC | 1 cut(s) | 557 |
| BsnI | GGCC | 3 cut(s) | 276, 357, 599 |
| Bsp143I | GATC | 1 cut(s) | 154 |
| BspACI | CCGC | 1 cut(s) | 500 |
| BspANI | GGCC | 3 cut(s) | 276, 357, 599 |
| BspCNI | CTCAG | 4 cut(s) | 121, 351, 365, 391 |
| BspHI | TCATGA | 1 cut(s) | 235 |
| BspLI | GGNNCC | 2 cut(s) | 198, 720 |
| BspPI | GGATC | 1 cut(s) | 149 |
| BspT107I | GGYRCC | 1 cut(s) | 196 |
| BsrI | ACTGG | 1 cut(s) | 154 |
| BssECI | CCNNGG | 2 cut(s) | 200, 638 |
| BssMI | GATC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 1 cut(s) | 638 |
| Bst2UI | CCWGG | 5 cut(s) | 201, 273, 488, 581, 706 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 529 |
| BstC8I | GCNNGC | 4 cut(s) | 228, 341, 345, 786 |
| BstDEI | CTNAG | 7 cut(s) | 23, 108, 122, 352, 359, 378, 521 |
| BstF5I | GGATG | 4 cut(s) | 335, 379, 576, 589 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 1 cut(s) | 157 |
| BstMAI | GTCTC | 2 cut(s) | 355, 600 |
| BstMBI | GATC | 1 cut(s) | 154 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 55, 458 |
| BstNI | CCWGG | 5 cut(s) | 201, 273, 488, 581, 706 |
| BstNSI | RCATGY | 2 cut(s) | 613, 769 |
| BstSCI | CCNGG | 6 cut(s) | 199, 271, 486, 579, 613, 704 |
| BstV1I | GCAGC | 4 cut(s) | 315, 490, 538, 541 |
| BstX2I | RGATCY | 1 cut(s) | 154 |
| BstYI | RGATCY | 1 cut(s) | 154 |
| Bsu36I | CCTNAGG | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 276, 357, 599 |
| BtsCI | GGATG | 4 cut(s) | 335, 379, 576, 589 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| Cac8I | GCNNGC | 4 cut(s) | 228, 341, 345, 786 |
| CaiI | CAGNNNCTG | 1 cut(s) | 487 |
| CciI | TCATGA | 1 cut(s) | 235 |
| CfoI | GCGC | 1 cut(s) | 406 |
| Cfr13I | GGNCC | 1 cut(s) | 598 |
| CsiI | ACCWGGT | 1 cut(s) | 486 |
| Csp6I | GTAC | 5 cut(s) | 119, 197, 503, 525, 740 |
| CviAII | CATG | 8 cut(s) | 62, 236, 300, 419, 533, 610, 749, 766 |
| CviQI | GTAC | 5 cut(s) | 119, 197, 503, 525, 740 |
| DdeI | CTNAG | 7 cut(s) | 23, 108, 122, 352, 359, 378, 521 |
| DpnI | GATC | 1 cut(s) | 156 |
| DpnII | GATC | 1 cut(s) | 154 |
| DraI | TTTAAA | 1 cut(s) | 163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 142 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 142 |
| Eco130I | CCWWGG | 1 cut(s) | 638 |
| Eco147I | AGGCCT | 1 cut(s) | 357 |
| Eco32I | GATATC | 1 cut(s) | 538 |
| Eco81I | CCTNAGG | 1 cut(s) | 108 |
| EcoRII | CCWGG | 5 cut(s) | 199, 271, 486, 579, 704 |
| EcoRV | GATATC | 1 cut(s) | 538 |
| EcoT14I | CCWWGG | 1 cut(s) | 638 |
| ErhI | CCWWGG | 1 cut(s) | 638 |
| FaeI | CATG | 8 cut(s) | 65, 239, 303, 422, 536, 613, 752, 769 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 489, 521 |
| FatI | CATG | 8 cut(s) | 61, 235, 299, 418, 532, 609, 748, 765 |
| FauNDI | CATATG | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 4 cut(s) | 304, 479, 552, 555 |
| FokI | GGATG | 4 cut(s) | 342, 386, 563, 596 |
| Fsp4HI | GCNGC | 4 cut(s) | 304, 479, 552, 555 |
| FspBI | CTAG | 2 cut(s) | 69, 668 |
| FspI | TGCGCA | 1 cut(s) | 405 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GluI | GCNGC | 4 cut(s) | 304, 479, 552, 555 |
| GsuI | CTGGAG | 2 cut(s) | 171, 727 |
| HaeIII | GGCC | 3 cut(s) | 276, 357, 599 |
| HapII | CCGG | 1 cut(s) | 614 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1II | CATG | 8 cut(s) | 65, 239, 303, 422, 536, 613, 752, 769 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HincII | GTYRAC | 1 cut(s) | 147 |
| HindII | GTYRAC | 1 cut(s) | 147 |
| HinfI | GANTC | 3 cut(s) | 103, 686, 691 |
| HpaII | CCGG | 1 cut(s) | 614 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 119, 147 |
| Hpy188III | TCNNGA | 5 cut(s) | 110, 236, 391, 698, 722 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 119, 147 |
| HpyAV | CCTTC | 2 cut(s) | 199, 251 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 529 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 33, 303, 347, 478, 532, 557, 635, 729 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 55, 458 |
| HpyF3I | CTNAG | 7 cut(s) | 23, 108, 122, 352, 359, 378, 521 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Hsp92II | CATG | 8 cut(s) | 65, 239, 303, 422, 536, 613, 752, 769 |
| HspAI | GCGC | 1 cut(s) | 404 |
| KpnI | GGTACC | 1 cut(s) | 200 |
| Kzo9I | GATC | 1 cut(s) | 154 |
| Lsp1109I | GCAGC | 4 cut(s) | 315, 490, 538, 541 |
| LweI | GCATC | 5 cut(s) | 20, 118, 320, 364, 585 |
| MabI | ACCWGGT | 1 cut(s) | 486 |
| MaeI | CTAG | 2 cut(s) | 69, 668 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 2 cut(s) | 391, 647 |
| MalI | GATC | 1 cut(s) | 156 |
| MboI | GATC | 1 cut(s) | 154 |
| MboII | GAAGA | 3 cut(s) | 187, 304, 406 |
| MflI | RGATCY | 1 cut(s) | 154 |
| MlyI | GAGTC | 2 cut(s) | 695, 700 |
| MmeI | TCCRAC | 1 cut(s) | 769 |
| MnlI | CCTC | 5 cut(s) | 30, 58, 117, 436, 541 |
| MseI | TTAA | 3 cut(s) | 87, 162, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 593 |
| MspI | CCGG | 1 cut(s) | 614 |
| MspR9I | CCNGG | 6 cut(s) | 201, 273, 488, 581, 615, 706 |
| Mva1269I | GAATGC | 1 cut(s) | 557 |
| MvaI | CCWGG | 5 cut(s) | 201, 273, 488, 581, 706 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 55, 458 |
| NciI | CCSGG | 1 cut(s) | 615 |
| NdeI | CATATG | 1 cut(s) | 568 |
| NdeII | GATC | 1 cut(s) | 154 |
| NlaIII | CATG | 8 cut(s) | 65, 239, 303, 422, 536, 613, 752, 769 |
| NlaIV | GGNNCC | 2 cut(s) | 198, 720 |
| NmuCI | GTSAC | 1 cut(s) | 391 |
| NsbI | TGCGCA | 1 cut(s) | 405 |
| NspI | RCATGY | 2 cut(s) | 613, 769 |
| PagI | TCATGA | 1 cut(s) | 235 |
| PceI | AGGCCT | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 557 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| PfoI | TCCNGGA | 1 cut(s) | 579 |
| PkrI | GCNGC | 4 cut(s) | 305, 480, 553, 556 |
| PleI | GAGTC | 2 cut(s) | 694, 699 |
| PpsI | GAGTC | 2 cut(s) | 694, 699 |
| Psp6I | CCWGG | 5 cut(s) | 199, 271, 486, 579, 704 |
| PspGI | CCWGG | 5 cut(s) | 199, 271, 486, 579, 704 |
| PspN4I | GGNNCC | 2 cut(s) | 198, 720 |
| PspPI | GGNCC | 1 cut(s) | 598 |
| PstNI | CAGNNNCTG | 1 cut(s) | 487 |
| PsuI | RGATCY | 1 cut(s) | 154 |
| RsaI | GTAC | 5 cut(s) | 120, 198, 504, 526, 741 |
| RsaNI | GTAC | 5 cut(s) | 119, 197, 503, 525, 740 |
| RseI | CAYNNNNRTG | 1 cut(s) | 593 |
| SaqAI | TTAA | 3 cut(s) | 87, 162, 771 |
| SatI | GCNGC | 4 cut(s) | 304, 479, 552, 555 |
| Sau3AI | GATC | 1 cut(s) | 154 |
| Sau96I | GGNCC | 1 cut(s) | 598 |
| SchI | GAGTC | 2 cut(s) | 695, 700 |
| ScrFI | CCNGG | 6 cut(s) | 201, 273, 488, 581, 615, 706 |
| SexAI | ACCWGGT | 1 cut(s) | 486 |
| SfaNI | GCATC | 5 cut(s) | 20, 118, 320, 364, 585 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 593 |
| SmlI | CTYRAG | 2 cut(s) | 334, 495 |
| SmoI | CTYRAG | 2 cut(s) | 334, 495 |
| SseBI | AGGCCT | 1 cut(s) | 357 |
| SsiI | CCGC | 1 cut(s) | 500 |
| SspI | AATATT | 1 cut(s) | 676 |
| SspMI | CTAG | 2 cut(s) | 69, 668 |
| StuI | AGGCCT | 1 cut(s) | 357 |
| StyD4I | CCNGG | 6 cut(s) | 199, 271, 486, 579, 613, 704 |
| StyI | CCWWGG | 1 cut(s) | 638 |
| TaaI | ACNGT | 2 cut(s) | 85, 529 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TaqI | TCGA | 2 cut(s) | 28, 689 |
| TatI | WGTACW | 2 cut(s) | 118, 739 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| Tru1I | TTAA | 3 cut(s) | 87, 162, 771 |
| Tru9I | TTAA | 3 cut(s) | 87, 162, 771 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseFI | GTSAC | 1 cut(s) | 391 |
| TseI | GCWGC | 4 cut(s) | 303, 478, 551, 554 |
| Tsp45I | GTSAC | 1 cut(s) | 391 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XceI | RCATGY | 2 cut(s) | 613, 769 |
| XspI | CTAG | 2 cut(s) | 69, 668 |