ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 5 - 94 | 6.1e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 228 |
| AgsI | TTSAA | 1 cut(s) | 104 |
| AluBI | AGCT | 2 cut(s) | 62, 131 |
| AluI | AGCT | 2 cut(s) | 62, 131 |
| Alw26I | GTCTC | 2 cut(s) | 104, 309 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 2 cut(s) | 4, 93 |
| AvaII | GGWCC | 1 cut(s) | 93 |
| BauI | CACGAG | 1 cut(s) | 83 |
| BbvI | GCAGC | 1 cut(s) | 54 |
| BccI | CCATC | 2 cut(s) | 15, 84 |
| BcoDI | GTCTC | 2 cut(s) | 104, 309 |
| BfaI | CTAG | 4 cut(s) | 123, 128, 140, 282 |
| BisI | GCNGC | 1 cut(s) | 68 |
| BlsI | GCNGC | 1 cut(s) | 69 |
| Bme18I | GGWCC | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 93 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 146, 178, 306 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bse3DI | GCAATG | 1 cut(s) | 32 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseGI | GGATG | 3 cut(s) | 95, 190, 211 |
| BseMI | GCAATG | 1 cut(s) | 32 |
| BseXI | GCAGC | 1 cut(s) | 54 |
| BseYI | CCCAGC | 1 cut(s) | 62 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsmAI | GTCTC | 2 cut(s) | 104, 309 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BsrDI | GCAATG | 1 cut(s) | 32 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssSI | CACGAG | 1 cut(s) | 83 |
| Bst2BI | CACGAG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 119 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 278 |
| BstF5I | GGATG | 3 cut(s) | 95, 190, 211 |
| BstMAI | GTCTC | 2 cut(s) | 104, 309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 128, 278 |
| BstNSI | RCATGY | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 54 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsCI | GGATG | 3 cut(s) | 95, 190, 211 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 93 |
| Csp6I | GTAC | 1 cut(s) | 227 |
| CviAII | CATG | 1 cut(s) | 38 |
| CviJI | RGCY | 6 cut(s) | 5, 47, 62, 67, 131, 143 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 47, 62, 67, 131, 143 |
| CviQI | GTAC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 41 |
| FaiI | YATR | 8 cut(s) | 12, 14, 39, 80, 201, 203, 234, 297 |
| FatI | CATG | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 1 cut(s) | 68 |
| FokI | GGATG | 3 cut(s) | 102, 197, 218 |
| Fsp4HI | GCNGC | 1 cut(s) | 68 |
| FspBI | CTAG | 4 cut(s) | 123, 128, 140, 282 |
| GluI | GCNGC | 1 cut(s) | 68 |
| GsaI | CCCAGC | 1 cut(s) | 66 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 41 |
| HinfI | GANTC | 1 cut(s) | 50 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 166 |
| Hpy188III | TCNNGA | 1 cut(s) | 242 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| HpyCH4III | ACNGT | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 37, 137 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 128, 278 |
| Hsp92II | CATG | 1 cut(s) | 41 |
| LpnPI | CCDG | 1 cut(s) | 48 |
| Lsp1109I | GCAGC | 1 cut(s) | 54 |
| MaeI | CTAG | 4 cut(s) | 123, 128, 140, 282 |
| MluCI | AATT | 2 cut(s) | 104, 168 |
| MnlI | CCTC | 5 cut(s) | 37, 79, 91, 148, 332 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 128, 278 |
| NlaIII | CATG | 1 cut(s) | 41 |
| NspI | RCATGY | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 50 |
| PkrI | GCNGC | 1 cut(s) | 69 |
| PspFI | CCCAGC | 1 cut(s) | 62 |
| PspPI | GGNCC | 2 cut(s) | 4, 93 |
| RsaI | GTAC | 1 cut(s) | 228 |
| RsaNI | GTAC | 1 cut(s) | 227 |
| SatI | GCNGC | 1 cut(s) | 68 |
| Sau96I | GGNCC | 2 cut(s) | 4, 93 |
| SetI | ASST | 4 cut(s) | 19, 64, 102, 133 |
| SinI | GGWCC | 1 cut(s) | 93 |
| Sse9I | AATT | 2 cut(s) | 104, 168 |
| SspMI | CTAG | 4 cut(s) | 123, 128, 140, 282 |
| TaaI | ACNGT | 1 cut(s) | 119 |
| TasI | AATT | 2 cut(s) | 104, 168 |
| TfiI | GAWTC | 1 cut(s) | 50 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TseI | GCWGC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 1 cut(s) | 208 |
| TspRI | CASTG | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 1 cut(s) | 93 |
| XceI | RCATGY | 1 cut(s) | 41 |
| XspI | CTAG | 4 cut(s) | 123, 128, 140, 282 |