Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 353, 435 |
| AcoI | YGGCCR | 1 cut(s) | 436 |
| AcsI | RAATTY | 1 cut(s) | 321 |
| AfaI | GTAC | 1 cut(s) | 460 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AflII | CTTAAG | 1 cut(s) | 374 |
| AflIII | ACRYGT | 1 cut(s) | 401 |
| AgsI | TTSAA | 1 cut(s) | 428 |
| AjiI | CACGTC | 1 cut(s) | 218 |
| AluBI | AGCT | 3 cut(s) | 20, 299, 432 |
| AluI | AGCT | 3 cut(s) | 20, 299, 432 |
| Alw21I | GWGCWC | 1 cut(s) | 22 |
| Alw26I | GTCTC | 1 cut(s) | 255 |
| AoxI | GGCC | 2 cut(s) | 181, 436 |
| ApeKI | GCWGC | 3 cut(s) | 143, 432, 482 |
| ApoI | RAATTY | 1 cut(s) | 321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 369 |
| AspA2I | CCTAGG | 1 cut(s) | 307 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| AvrII | CCTAGG | 1 cut(s) | 307 |
| BanII | GRGCYC | 1 cut(s) | 22 |
| Bbv12I | GWGCWC | 1 cut(s) | 22 |
| BbvI | GCAGC | 3 cut(s) | 130, 419, 469 |
| BceAI | ACGGC | 1 cut(s) | 423 |
| BcoDI | GTCTC | 1 cut(s) | 255 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfrI | CTTAAG | 1 cut(s) | 374 |
| BglII | AGATCT | 1 cut(s) | 59 |
| BisI | GCNGC | 4 cut(s) | 144, 433, 436, 483 |
| BlnI | CCTAGG | 1 cut(s) | 307 |
| BlsI | GCNGC | 4 cut(s) | 145, 434, 437, 484 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmgBI | CACGTC | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmsI | GCATC | 1 cut(s) | 123 |
| Bpu10I | CCTNAGC | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BsaI | GGTCTC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 1 cut(s) | 307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 325, 355 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse3DI | GCAATG | 2 cut(s) | 241, 461 |
| BseDI | CCNNGG | 1 cut(s) | 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMI | GCAATG | 2 cut(s) | 241, 461 |
| BseX3I | CGGCCG | 1 cut(s) | 436 |
| BseXI | GCAGC | 3 cut(s) | 130, 419, 469 |
| Bsh1285I | CGRYCG | 1 cut(s) | 439 |
| BshFI | GGCC | 2 cut(s) | 183, 438 |
| BsiEI | CGRYCG | 1 cut(s) | 439 |
| BsiHKAI | GWGCWC | 1 cut(s) | 22 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 1 cut(s) | 255 |
| BsmI | GAATGC | 1 cut(s) | 74 |
| BsnI | GGCC | 2 cut(s) | 183, 438 |
| Bso31I | GGTCTC | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 22 |
| Bsp143I | GATC | 3 cut(s) | 59, 151, 346 |
| BspACI | CCGC | 2 cut(s) | 353, 435 |
| BspANI | GGCC | 2 cut(s) | 183, 438 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspTI | CTTAAG | 1 cut(s) | 374 |
| BspTNI | GGTCTC | 1 cut(s) | 255 |
| BsrDI | GCAATG | 2 cut(s) | 241, 461 |
| BssECI | CCNNGG | 1 cut(s) | 307 |
| BssMI | GATC | 3 cut(s) | 59, 151, 346 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 1 cut(s) | 291 |
| BstAFI | CTTAAG | 1 cut(s) | 374 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 3 cut(s) | 131, 158, 300 |
| BstKTI | GATC | 3 cut(s) | 62, 154, 349 |
| BstMAI | GTCTC | 1 cut(s) | 255 |
| BstMBI | GATC | 3 cut(s) | 59, 151, 346 |
| BstMCI | CGRYCG | 1 cut(s) | 439 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 120 |
| BstNSI | RCATGY | 1 cut(s) | 405 |
| BstV1I | GCAGC | 3 cut(s) | 130, 419, 469 |
| BstX2I | RGATCY | 1 cut(s) | 59 |
| BstYI | RGATCY | 1 cut(s) | 59 |
| BstZI | CGGCCG | 1 cut(s) | 436 |
| BsuRI | GGCC | 2 cut(s) | 183, 438 |
| BtrI | CACGTC | 1 cut(s) | 218 |
| CciI | TCATGA | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| Csp6I | GTAC | 1 cut(s) | 459 |
| CviAII | CATG | 2 cut(s) | 149, 402 |
| CviJI | RGCY | 6 cut(s) | 20, 183, 299, 338, 432, 438 |
| CviKI_1 | RGCY | 6 cut(s) | 20, 183, 299, 338, 432, 438 |
| CviQI | GTAC | 1 cut(s) | 459 |
| DdeI | CTNAG | 3 cut(s) | 131, 158, 300 |
| DpnI | GATC | 3 cut(s) | 61, 153, 348 |
| DpnII | GATC | 3 cut(s) | 59, 151, 346 |
| EaeI | YGGCCR | 1 cut(s) | 436 |
| EagI | CGGCCG | 1 cut(s) | 436 |
| Ecl136II | GAGCTC | 1 cut(s) | 20 |
| EclXI | CGGCCG | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 22 |
| Eco31I | GGTCTC | 1 cut(s) | 255 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco52I | CGGCCG | 1 cut(s) | 436 |
| Eco53kI | GAGCTC | 1 cut(s) | 20 |
| EcoICRI | GAGCTC | 1 cut(s) | 20 |
| EcoO109I | RGGNCCY | 1 cut(s) | 304 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 1 cut(s) | 125 |
| EcoT38I | GRGCYC | 1 cut(s) | 22 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 2 cut(s) | 152, 405 |
| FatI | CATG | 2 cut(s) | 148, 401 |
| FauI | CCCGC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 4 cut(s) | 144, 433, 436, 483 |
| FriOI | GRGCYC | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 4 cut(s) | 144, 433, 436, 483 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GluI | GCNGC | 4 cut(s) | 144, 433, 436, 483 |
| HaeIII | GGCC | 2 cut(s) | 183, 438 |
| Hin1II | CATG | 2 cut(s) | 152, 405 |
| HincII | GTYRAC | 2 cut(s) | 82, 243 |
| HindII | GTYRAC | 2 cut(s) | 82, 243 |
| HpaI | GTTAAC | 1 cut(s) | 82 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 82, 243 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 149, 170, 272 |
| Hpy8I | GTNNAC | 2 cut(s) | 82, 243 |
| HpyAV | CCTTC | 3 cut(s) | 104, 383, 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 291 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 4 cut(s) | 123, 215, 319, 414 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 120 |
| HpyF3I | CTNAG | 3 cut(s) | 131, 158, 300 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92II | CATG | 2 cut(s) | 152, 405 |
| KspAI | GTTAAC | 1 cut(s) | 82 |
| Kzo9I | GATC | 3 cut(s) | 59, 151, 346 |
| LmnI | GCTCC | 2 cut(s) | 17, 490 |
| LpnPI | CCDG | 6 cut(s) | 53, 55, 70, 183, 242, 257 |
| Lsp1109I | GCAGC | 3 cut(s) | 130, 419, 469 |
| LweI | GCATC | 1 cut(s) | 123 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MaeIII | GTNAC | 1 cut(s) | 397 |
| MalI | GATC | 3 cut(s) | 61, 153, 348 |
| MboI | GATC | 3 cut(s) | 59, 151, 346 |
| MflI | RGATCY | 1 cut(s) | 59 |
| MhlI | GDGCHC | 1 cut(s) | 22 |
| MluCI | AATT | 2 cut(s) | 321, 415 |
| MnlI | CCTC | 3 cut(s) | 256, 262, 327 |
| Mph1103I | ATGCAT | 1 cut(s) | 125 |
| MroXI | GAANNNNTTC | 1 cut(s) | 369 |
| MseI | TTAA | 2 cut(s) | 81, 375 |
| MspCI | CTTAAG | 1 cut(s) | 374 |
| Mva1269I | GAATGC | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 120 |
| NdeII | GATC | 3 cut(s) | 59, 151, 346 |
| NlaIII | CATG | 2 cut(s) | 152, 405 |
| NmuCI | GTSAC | 1 cut(s) | 397 |
| NsiI | ATGCAT | 1 cut(s) | 125 |
| NspI | RCATGY | 1 cut(s) | 405 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PciI | ACATGT | 1 cut(s) | 401 |
| PctI | GAATGC | 1 cut(s) | 74 |
| PdmI | GAANNNNTTC | 1 cut(s) | 369 |
| PkrI | GCNGC | 4 cut(s) | 145, 434, 437, 484 |
| PpuMI | RGGWCCY | 1 cut(s) | 304 |
| PscI | ACATGT | 1 cut(s) | 401 |
| Psp124BI | GAGCTC | 1 cut(s) | 22 |
| Psp5II | RGGWCCY | 1 cut(s) | 304 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PspPPI | RGGWCCY | 1 cut(s) | 304 |
| PsuI | RGATCY | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 460 |
| RsaNI | GTAC | 1 cut(s) | 459 |
| SacI | GAGCTC | 1 cut(s) | 22 |
| SaqAI | TTAA | 2 cut(s) | 81, 375 |
| SatI | GCNGC | 4 cut(s) | 144, 433, 436, 483 |
| Sau3AI | GATC | 3 cut(s) | 59, 151, 346 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| SduI | GDGCHC | 1 cut(s) | 22 |
| SfaNI | GCATC | 1 cut(s) | 123 |
| SinI | GGWCC | 1 cut(s) | 304 |
| SmlI | CTYRAG | 2 cut(s) | 23, 374 |
| SmoI | CTYRAG | 2 cut(s) | 23, 374 |
| Sse9I | AATT | 2 cut(s) | 321, 415 |
| SsiI | CCGC | 2 cut(s) | 353, 435 |
| SspMI | CTAG | 1 cut(s) | 308 |
| SstI | GAGCTC | 1 cut(s) | 22 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaaI | ACNGT | 1 cut(s) | 291 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TaqI | TCGA | 1 cut(s) | 154 |
| TasI | AATT | 2 cut(s) | 321, 415 |
| TatI | WGTACW | 1 cut(s) | 458 |
| TauI | GCSGC | 1 cut(s) | 438 |
| Tru1I | TTAA | 2 cut(s) | 81, 375 |
| Tru9I | TTAA | 2 cut(s) | 81, 375 |
| TseFI | GTSAC | 1 cut(s) | 397 |
| TseI | GCWGC | 3 cut(s) | 143, 432, 482 |
| Tsp45I | GTSAC | 1 cut(s) | 397 |
| TspDTI | ATGAA | 3 cut(s) | 123, 178, 402 |
| Vha464I | CTTAAG | 1 cut(s) | 374 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XapI | RAATTY | 1 cut(s) | 321 |
| XceI | RCATGY | 1 cut(s) | 405 |
| XmaJI | CCTAGG | 1 cut(s) | 307 |
| XmnI | GAANNNNTTC | 1 cut(s) | 369 |
| XspI | CTAG | 1 cut(s) | 308 |
| Zsp2I | ATGCAT | 1 cut(s) | 125 |