Topless-related protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 637, 2036, 3931 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 224, 2591 |
| AccBSI | CCGCTC | 1 cut(s) | 3384 |
| AccII | CGCG | 1 cut(s) | 170 |
| AccIII | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| AcoI | YGGCCR | 2 cut(s) | 2009, 3013 |
| AcsI | RAATTY | 7 cut(s) | 71, 116, 1717, 1923, 2516, 2947, 4130 |
| AcvI | CACGTG | 2 cut(s) | 1043, 3407 |
| AfaI | GTAC | 8 cut(s) | 483, 792, 1185, 1691, 2355, 3099, 3156, 4064 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 224, 674, 1283, 2189, 2591, 3038 |
| AflII | CTTAAG | 1 cut(s) | 1393 |
| AflIII | ACRYGT | 1 cut(s) | 3404 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1576, 1608, 1990, 2022, 3359, 3391 |
| Alw21I | GWGCWC | 4 cut(s) | 884, 1504, 2757, 3266 |
| Alw26I | GTCTC | 4 cut(s) | 546, 2102, 2386, 3033 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 706 |
| Ama87I | CYCGRG | 1 cut(s) | 2215 |
| Aor13HI | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| AoxI | GGCC | 2 cut(s) | 2009, 3013 |
| ApeKI | GCWGC | 8 cut(s) | 101, 104, 700, 1767, 1939, 2293, 3064, 3874 |
| ApoI | RAATTY | 7 cut(s) | 71, 116, 1717, 1923, 2516, 2947, 4130 |
| AseI | ATTAAT | 2 cut(s) | 842, 3311 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 518, 980, 2025, 2199, 3344 |
| AspLEI | GCGC | 2 cut(s) | 170, 172 |
| AsuC2I | CCSGG | 2 cut(s) | 2216, 2217 |
| AsuHPI | GGTGA | 3 cut(s) | 985, 2204, 3349 |
| AvaI | CYCGRG | 1 cut(s) | 2215 |
| BalI | TGGCCA | 2 cut(s) | 2011, 3015 |
| BamHI | GGATCC | 4 cut(s) | 709, 811, 3073, 3175 |
| BanI | GGYRCC | 3 cut(s) | 637, 2036, 3931 |
| BanII | GRGCYC | 3 cut(s) | 2222, 3248, 3266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2337, 2369 |
| BauI | CACGAG | 2 cut(s) | 2756, 3609 |
| BbrPI | CACGTG | 2 cut(s) | 1043, 3407 |
| BbsI | GAAGAC | 4 cut(s) | 266, 1551, 2163, 2442 |
| Bbv12I | GWGCWC | 4 cut(s) | 884, 1504, 2757, 3266 |
| BbvI | GCAGC | 8 cut(s) | 113, 116, 712, 1779, 1926, 2280, 3076, 3861 |
| BceAI | ACGGC | 2 cut(s) | 1897, 2183 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1756, 1790 |
| BclI | TGATCA | 1 cut(s) | 2938 |
| BcnI | CCSGG | 2 cut(s) | 2216, 2217 |
| BcoDI | GTCTC | 4 cut(s) | 546, 2102, 2386, 3033 |
| BfaI | CTAG | 6 cut(s) | 53, 581, 1740, 1829, 3267, 3447 |
| BfmI | CTRYAG | 4 cut(s) | 1074, 3045, 3150, 3438 |
| BfrI | CTTAAG | 1 cut(s) | 1393 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1730 |
| BglII | AGATCT | 1 cut(s) | 4141 |
| BlpI | GCTNAGC | 2 cut(s) | 1440, 3810 |
| Bme1390I | CCNGG | 2 cut(s) | 2216, 2217 |
| BmeT110I | CYCGRG | 1 cut(s) | 2215 |
| BmiI | GGNNCC | 9 cut(s) | 639, 711, 813, 1472, 2038, 2639, 3075, 3177, 3933 |
| BmrFI | CCNGG | 2 cut(s) | 2216, 2217 |
| BmrI | ACTGGG | 2 cut(s) | 1313, 3683 |
| BmuI | ACTGGG | 2 cut(s) | 1313, 3683 |
| BpiI | GAAGAC | 4 cut(s) | 266, 1551, 2163, 2442 |
| BpmI | CTGGAG | 3 cut(s) | 702, 1006, 3400 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1440, 3810 |
| BpuEI | CTTGAG | 3 cut(s) | 573, 1695, 3995 |
| BpuMI | CCSGG | 2 cut(s) | 2216, 2217 |
| BsaAI | YACGTR | 2 cut(s) | 1043, 3407 |
| BsaBI | GATNNNNATC | 2 cut(s) | 960, 3324 |
| BsaI | GGTCTC | 1 cut(s) | 3033 |
| BsaJI | CCNNGG | 8 cut(s) | 620, 902, 1725, 2215, 2984, 3248, 3366, 4084 |
| BsaWI | WCCGGW | 3 cut(s) | 277, 2644, 4134 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 675, 705 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 224, 674, 1283, 2189, 2591, 3038 |
| Bse1I | ACTGG | 5 cut(s) | 685, 711, 1319, 1553, 3689 |
| Bse3DI | GCAATG | 2 cut(s) | 733, 2038 |
| Bse8I | GATNNNNATC | 2 cut(s) | 960, 3324 |
| BseAI | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| BseDI | CCNNGG | 8 cut(s) | 620, 902, 1725, 2215, 2984, 3248, 3366, 4084 |
| BseJI | GATNNNNATC | 2 cut(s) | 960, 3324 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 224, 674, 1283, 2189, 2591, 3038 |
| BseMI | GCAATG | 2 cut(s) | 733, 2038 |
| BseMII | CTCAG | 1 cut(s) | 2180 |
| BseNI | ACTGG | 5 cut(s) | 685, 711, 1319, 1553, 3689 |
| BsePI | GCGCGC | 1 cut(s) | 168 |
| BseRI | GAGGAG | 6 cut(s) | 887, 1337, 2283, 3254, 3670, 3707 |
| BseXI | GCAGC | 8 cut(s) | 113, 116, 712, 1779, 1926, 2280, 3076, 3861 |
| BsgI | GTGCAG | 2 cut(s) | 583, 2279 |
| Bsh1236I | CGCG | 1 cut(s) | 170 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1636 |
| BshFI | GGCC | 2 cut(s) | 2011, 3015 |
| BshNI | GGYRCC | 3 cut(s) | 637, 2036, 3931 |
| BsiEI | CGRYCG | 1 cut(s) | 1636 |
| BsiHKAI | GWGCWC | 4 cut(s) | 884, 1504, 2757, 3266 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2215 |
| BsiSI | CCGG | 4 cut(s) | 278, 2216, 2645, 4135 |
| BslFI | GGGAC | 1 cut(s) | 578 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 224, 674, 1283, 2189, 2591, 3038 |
| BsmAI | GTCTC | 4 cut(s) | 546, 2102, 2386, 3033 |
| BsmFI | GGGAC | 1 cut(s) | 578 |
| BsmI | GAATGC | 4 cut(s) | 917, 980, 3344, 4121 |
| BsnI | GGCC | 2 cut(s) | 2011, 3015 |
| Bso31I | GGTCTC | 1 cut(s) | 3033 |
| BsoBI | CYCGRG | 1 cut(s) | 2215 |
| Bsp1286I | GDGCHC | 6 cut(s) | 884, 1504, 2222, 2757, 3248, 3266 |
| Bsp13I | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1440, 3810 |
| Bsp19I | CCATGG | 1 cut(s) | 1725 |
| BspANI | GGCC | 2 cut(s) | 2011, 3015 |
| BspCNI | CTCAG | 1 cut(s) | 2179 |
| BspEI | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| BspFNI | CGCG | 1 cut(s) | 170 |
| BspHI | TCATGA | 3 cut(s) | 382, 1240, 4165 |
| BspLI | GGNNCC | 9 cut(s) | 639, 711, 813, 1472, 2038, 2639, 3075, 3177, 3933 |
| BspMAI | CTGCAG | 4 cut(s) | 1078, 3049, 3154, 3442 |
| BspQI | GCTCTTC | 2 cut(s) | 393, 872 |
| BspT107I | GGYRCC | 3 cut(s) | 637, 2036, 3931 |
| BspTI | CTTAAG | 1 cut(s) | 1393 |
| BspTNI | GGTCTC | 1 cut(s) | 3033 |
| BsrBI | CCGCTC | 1 cut(s) | 3384 |
| BsrDI | GCAATG | 2 cut(s) | 733, 2038 |
| BsrI | ACTGG | 5 cut(s) | 685, 711, 1319, 1553, 3689 |
| BssECI | CCNNGG | 8 cut(s) | 620, 902, 1725, 2215, 2984, 3248, 3366, 4084 |
| BssHII | GCGCGC | 1 cut(s) | 168 |
| BssSI | CACGAG | 2 cut(s) | 2756, 3609 |
| BssT1I | CCWWGG | 7 cut(s) | 620, 902, 1725, 2984, 3248, 3366, 4084 |
| Bst2BI | CACGAG | 2 cut(s) | 2756, 3609 |
| Bst4CI | ACNGT | 5 cut(s) | 450, 790, 1637, 2300, 3055 |
| BstAFI | CTTAAG | 1 cut(s) | 1393 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstBAI | YACGTR | 2 cut(s) | 1043, 3407 |
| BstC8I | GCNNGC | 6 cut(s) | 170, 820, 1033, 1084, 2537, 3184 |
| BstDEI | CTNAG | 5 cut(s) | 1440, 1565, 2166, 2440, 3810 |
| BstDSI | CCRYGG | 1 cut(s) | 1725 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 672 |
| BstFNI | CGCG | 1 cut(s) | 170 |
| BstHHI | GCGC | 2 cut(s) | 170, 172 |
| BstMAI | GTCTC | 4 cut(s) | 546, 2102, 2386, 3033 |
| BstMCI | CGRYCG | 1 cut(s) | 1636 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 649, 1037, 1499, 1730, 1736 |
| BstNSI | RCATGY | 2 cut(s) | 767, 3131 |
| BstSCI | CCNGG | 2 cut(s) | 2214, 2215 |
| BstSFI | CTRYAG | 4 cut(s) | 1074, 3045, 3150, 3438 |
| BstUI | CGCG | 1 cut(s) | 170 |
| BstV1I | GCAGC | 8 cut(s) | 113, 116, 712, 1779, 1926, 2280, 3076, 3861 |
| BstV2I | GAAGAC | 4 cut(s) | 266, 1551, 2163, 2442 |
| BstX2I | RGATCY | 7 cut(s) | 583, 709, 811, 3073, 3175, 3361, 4141 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3255 |
| BstYI | RGATCY | 7 cut(s) | 583, 709, 811, 3073, 3175, 3361, 4141 |
| BsuRI | GGCC | 2 cut(s) | 2011, 3015 |
| BtgI | CCRYGG | 1 cut(s) | 1725 |
| BtsI | GCAGTG | 8 cut(s) | 114, 600, 1071, 1502, 1751, 2481, 2964, 3435 |
| Cac8I | GCNNGC | 6 cut(s) | 170, 820, 1033, 1084, 2537, 3184 |
| CaiI | CAGNNNCTG | 1 cut(s) | 706 |
| CciI | TCATGA | 3 cut(s) | 382, 1240, 4165 |
| CfoI | GCGC | 2 cut(s) | 170, 172 |
| Cfr9I | CCCGGG | 1 cut(s) | 2215 |
| Csp6I | GTAC | 8 cut(s) | 482, 791, 1184, 1690, 2354, 3098, 3155, 4063 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 171, 206 |
| CviQI | GTAC | 8 cut(s) | 482, 791, 1184, 1690, 2354, 3098, 3155, 4063 |
| DdeI | CTNAG | 5 cut(s) | 1440, 1565, 2166, 2440, 3810 |
| DraI | TTTAAA | 2 cut(s) | 1660, 4033 |
| EaeI | YGGCCR | 2 cut(s) | 2009, 3013 |
| Ecl136II | GAGCTC | 1 cut(s) | 3264 |
| Eco130I | CCWWGG | 7 cut(s) | 620, 902, 1725, 2984, 3248, 3366, 4084 |
| Eco24I | GRGCYC | 3 cut(s) | 2222, 3248, 3266 |
| Eco31I | GGTCTC | 1 cut(s) | 3033 |
| Eco53kI | GAGCTC | 1 cut(s) | 3264 |
| Eco72I | CACGTG | 2 cut(s) | 1043, 3407 |
| Eco88I | CYCGRG | 1 cut(s) | 2215 |
| EcoICRI | GAGCTC | 1 cut(s) | 3264 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 672 |
| EcoRI | GAATTC | 2 cut(s) | 116, 4130 |
| EcoT14I | CCWWGG | 7 cut(s) | 620, 902, 1725, 2984, 3248, 3366, 4084 |
| EcoT22I | ATGCAT | 3 cut(s) | 1452, 3466, 3822 |
| EcoT38I | GRGCYC | 3 cut(s) | 2222, 3248, 3266 |
| ErhI | CCWWGG | 7 cut(s) | 620, 902, 1725, 2984, 3248, 3366, 4084 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 503, 535, 516, 548, 1548, 1580 |
| FaqI | GGGAC | 1 cut(s) | 578 |
| FauI | CCCGC | 3 cut(s) | 1763, 2528, 3377 |
| FbaI | TGATCA | 1 cut(s) | 2938 |
| FriOI | GRGCYC | 3 cut(s) | 2222, 3248, 3266 |
| FspBI | CTAG | 6 cut(s) | 53, 581, 1740, 1829, 3267, 3447 |
| GlaI | GCGC | 2 cut(s) | 169, 171 |
| GsuI | CTGGAG | 3 cut(s) | 702, 1006, 3400 |
| HaeIII | GGCC | 2 cut(s) | 2011, 3015 |
| HapII | CCGG | 4 cut(s) | 278, 2216, 2645, 4135 |
| HhaI | GCGC | 2 cut(s) | 170, 172 |
| Hin6I | GCGC | 2 cut(s) | 168, 170 |
| HinP1I | GCGC | 2 cut(s) | 168, 170 |
| HincII | GTYRAC | 2 cut(s) | 1759, 1852 |
| HindII | GTYRAC | 2 cut(s) | 1759, 1852 |
| HindIII | AAGCTT | 2 cut(s) | 2690, 3277 |
| HpaII | CCGG | 4 cut(s) | 278, 2216, 2645, 4135 |
| HphI | GGTGA | 3 cut(s) | 985, 2204, 3349 |
| Hpy166II | GTNNAC | 3 cut(s) | 1377, 1759, 1852 |
| Hpy8I | GTNNAC | 3 cut(s) | 1377, 1759, 1852 |
| HpyAV | CCTTC | 9 cut(s) | 380, 668, 820, 2651, 2756, 2785, 2914, 3168, 3385 |
| HpyCH4III | ACNGT | 5 cut(s) | 450, 790, 1637, 2300, 3055 |
| HpyCH4IV | ACGT | 5 cut(s) | 1042, 1089, 2356, 2886, 3406 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 649, 1037, 1499, 1730, 1736 |
| HpyF3I | CTNAG | 5 cut(s) | 1440, 1565, 2166, 2440, 3810 |
| HpySE526I | ACGT | 5 cut(s) | 1042, 1089, 2356, 2886, 3406 |
| HspAI | GCGC | 2 cut(s) | 168, 170 |
| Kpn2I | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| Ksp22I | TGATCA | 1 cut(s) | 2938 |
| LguI | GCTCTTC | 2 cut(s) | 393, 872 |
| LmnI | GCTCC | 9 cut(s) | 772, 1108, 1498, 2371, 2637, 2647, 2704, 3381, 3868 |
| Lsp1109I | GCAGC | 8 cut(s) | 113, 116, 712, 1779, 1926, 2280, 3076, 3861 |
| MaeI | CTAG | 6 cut(s) | 53, 581, 1740, 1829, 3267, 3447 |
| MaeII | ACGT | 5 cut(s) | 1042, 1089, 2356, 2886, 3406 |
| MaeIII | GTNAC | 6 cut(s) | 450, 2140, 3049, 3400, 3423, 3671 |
| MbiI | CCGCTC | 1 cut(s) | 3384 |
| MfeI | CAATTG | 6 cut(s) | 44, 611, 1262, 1454, 2975, 3068 |
| MflI | RGATCY | 7 cut(s) | 583, 709, 811, 3073, 3175, 3361, 4141 |
| MhlI | GDGCHC | 6 cut(s) | 884, 1504, 2222, 2757, 3248, 3266 |
| MlsI | TGGCCA | 2 cut(s) | 2011, 3015 |
| MluNI | TGGCCA | 2 cut(s) | 2011, 3015 |
| MlyI | GAGTC | 3 cut(s) | 280, 625, 2989 |
| MmeI | TCCRAC | 6 cut(s) | 1154, 1869, 1929, 2887, 3167, 3902 |
| Mox20I | TGGCCA | 2 cut(s) | 2011, 3015 |
| Mph1103I | ATGCAT | 3 cut(s) | 1452, 3466, 3822 |
| MroI | TCCGGA | 3 cut(s) | 277, 2644, 4134 |
| MroXI | GAANNNNTTC | 5 cut(s) | 518, 980, 2025, 2199, 3344 |
| MscI | TGGCCA | 2 cut(s) | 2011, 3015 |
| MslI | CAYNNNNRTG | 2 cut(s) | 293, 2871 |
| Msp20I | TGGCCA | 2 cut(s) | 2011, 3015 |
| MspA1I | CMGCKG | 3 cut(s) | 1770, 1802, 4176 |
| MspCI | CTTAAG | 1 cut(s) | 1393 |
| MspI | CCGG | 4 cut(s) | 278, 2216, 2645, 4135 |
| MspR9I | CCNGG | 2 cut(s) | 2216, 2217 |
| MunI | CAATTG | 6 cut(s) | 44, 611, 1262, 1454, 2975, 3068 |
| Mva1269I | GAATGC | 4 cut(s) | 917, 980, 3344, 4121 |
| MvnI | CGCG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 649, 1037, 1499, 1730, 1736 |
| NciI | CCSGG | 2 cut(s) | 2216, 2217 |
| NcoI | CCATGG | 1 cut(s) | 1725 |
| NlaIV | GGNNCC | 9 cut(s) | 639, 711, 813, 1472, 2038, 2639, 3075, 3177, 3933 |
| NmuCI | GTSAC | 2 cut(s) | 3400, 3671 |
| NsiI | ATGCAT | 3 cut(s) | 1452, 3466, 3822 |
| NspI | RCATGY | 2 cut(s) | 767, 3131 |
| PagI | TCATGA | 3 cut(s) | 382, 1240, 4165 |
| PauI | GCGCGC | 1 cut(s) | 168 |
| PciSI | GCTCTTC | 2 cut(s) | 393, 872 |
| PctI | GAATGC | 4 cut(s) | 917, 980, 3344, 4121 |
| PdmI | GAANNNNTTC | 5 cut(s) | 518, 980, 2025, 2199, 3344 |
| PfeI | GAWTC | 8 cut(s) | 857, 1258, 1699, 1861, 2048, 2170, 3628, 4072 |
| PflFI | GACNNNGTC | 1 cut(s) | 1879 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 224, 2591 |
| PleI | GAGTC | 3 cut(s) | 279, 624, 2988 |
| PmaCI | CACGTG | 2 cut(s) | 1043, 3407 |
| PmlI | CACGTG | 2 cut(s) | 1043, 3407 |
| PpsI | GAGTC | 3 cut(s) | 279, 624, 2988 |
| Ppu21I | YACGTR | 2 cut(s) | 1043, 3407 |
| PshBI | ATTAAT | 2 cut(s) | 842, 3311 |
| Psp124BI | GAGCTC | 1 cut(s) | 3266 |
| PspCI | CACGTG | 2 cut(s) | 1043, 3407 |
| PspN4I | GGNNCC | 9 cut(s) | 639, 711, 813, 1472, 2038, 2639, 3075, 3177, 3933 |
| PstI | CTGCAG | 4 cut(s) | 1078, 3049, 3154, 3442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 706 |
| PsuI | RGATCY | 7 cut(s) | 583, 709, 811, 3073, 3175, 3361, 4141 |
| PsyI | GACNNNGTC | 1 cut(s) | 1879 |
| PteI | GCGCGC | 1 cut(s) | 168 |
| PvuII | CAGCTG | 2 cut(s) | 1802, 4176 |
| RsaI | GTAC | 8 cut(s) | 483, 792, 1185, 1691, 2355, 3099, 3156, 4064 |
| RsaNI | GTAC | 8 cut(s) | 482, 791, 1184, 1690, 2354, 3098, 3155, 4063 |
| RseI | CAYNNNNRTG | 2 cut(s) | 293, 2871 |
| SacI | GAGCTC | 1 cut(s) | 3266 |
| SapI | GCTCTTC | 2 cut(s) | 393, 872 |
| SchI | GAGTC | 3 cut(s) | 280, 625, 2989 |
| ScrFI | CCNGG | 2 cut(s) | 2216, 2217 |
| SduI | GDGCHC | 6 cut(s) | 884, 1504, 2222, 2757, 3248, 3266 |
| SfcI | CTRYAG | 4 cut(s) | 1074, 3045, 3150, 3438 |
| SmaI | CCCGGG | 1 cut(s) | 2217 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 293, 2871 |
| SmlI | CTYRAG | 4 cut(s) | 588, 1393, 1710, 4010 |
| SmoI | CTYRAG | 4 cut(s) | 588, 1393, 1710, 4010 |
| SrfI | GCCCGGGC | 1 cut(s) | 2217 |
| SspI | AATATT | 3 cut(s) | 208, 2429, 2686 |
| SspMI | CTAG | 6 cut(s) | 53, 581, 1740, 1829, 3267, 3447 |
| SstI | GAGCTC | 1 cut(s) | 3266 |
| StyD4I | CCNGG | 2 cut(s) | 2214, 2215 |
| StyI | CCWWGG | 7 cut(s) | 620, 902, 1725, 2984, 3248, 3366, 4084 |
| TaaI | ACNGT | 5 cut(s) | 450, 790, 1637, 2300, 3055 |
| TaiI | ACGT | 5 cut(s) | 1045, 1092, 2359, 2889, 3409 |
| TaqI | TCGA | 6 cut(s) | 240, 333, 351, 1614, 2068, 2772 |
| TatI | WGTACW | 2 cut(s) | 1689, 4062 |
| TauI | GCSGC | 4 cut(s) | 643, 1677, 1733, 4050 |
| TfiI | GAWTC | 8 cut(s) | 857, 1258, 1699, 1861, 2048, 2170, 3628, 4072 |
| TseFI | GTSAC | 2 cut(s) | 3400, 3671 |
| TseI | GCWGC | 8 cut(s) | 101, 104, 700, 1767, 1939, 2293, 3064, 3874 |
| Tsp45I | GTSAC | 2 cut(s) | 3400, 3671 |
| TspGWI | ACGGA | 2 cut(s) | 1527, 2168 |
| TspMI | CCCGGG | 1 cut(s) | 2215 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1879 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 224, 2591 |
| Vha464I | CTTAAG | 1 cut(s) | 1393 |
| VspI | ATTAAT | 2 cut(s) | 842, 3311 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 672 |
| XapI | RAATTY | 7 cut(s) | 71, 116, 1717, 1923, 2516, 2947, 4130 |
| XceI | RCATGY | 2 cut(s) | 767, 3131 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1732 |
| XmaI | CCCGGG | 1 cut(s) | 2215 |
| XmnI | GAANNNNTTC | 5 cut(s) | 518, 980, 2025, 2199, 3344 |
| XspI | CTAG | 6 cut(s) | 53, 581, 1740, 1829, 3267, 3447 |
| Zsp2I | ATGCAT | 3 cut(s) | 1452, 3466, 3822 |