Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 96 - 218 | 3.2e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 260, 369 |
| AclWI | GGATC | 1 cut(s) | 177 |
| AcuI | CTGAAG | 3 cut(s) | 252, 426, 546 |
| AfaI | GTAC | 4 cut(s) | 25, 37, 611, 730 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 269 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AgsI | TTSAA | 2 cut(s) | 20, 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 489 |
| AluBI | AGCT | 4 cut(s) | 13, 410, 644, 711 |
| AluI | AGCT | 4 cut(s) | 13, 410, 644, 711 |
| Alw26I | GTCTC | 3 cut(s) | 210, 476, 508 |
| AlwI | GGATC | 1 cut(s) | 177 |
| AoxI | GGCC | 4 cut(s) | 81, 245, 282, 618 |
| ApeKI | GCWGC | 2 cut(s) | 434, 629 |
| AspS9I | GGNCC | 2 cut(s) | 82, 255 |
| AsuHPI | GGTGA | 1 cut(s) | 368 |
| AvaII | GGWCC | 1 cut(s) | 255 |
| BbvCI | CCTCAGC | 1 cut(s) | 535 |
| BbvI | GCAGC | 2 cut(s) | 421, 616 |
| BccI | CCATC | 2 cut(s) | 96, 287 |
| BcoDI | GTCTC | 3 cut(s) | 210, 476, 508 |
| BfaI | CTAG | 2 cut(s) | 446, 584 |
| BfmI | CTRYAG | 2 cut(s) | 411, 575 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 2 cut(s) | 435, 630 |
| BlsI | GCNGC | 2 cut(s) | 436, 631 |
| Bme18I | GGWCC | 1 cut(s) | 255 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 489 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 255 |
| BmiI | GGNNCC | 1 cut(s) | 257 |
| BmsI | GCATC | 3 cut(s) | 56, 337, 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 50, 82 |
| BpmI | CTGGAG | 2 cut(s) | 29, 681 |
| Bpu10I | CCTNAGC | 1 cut(s) | 535 |
| BsaAI | YACGTR | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 1 cut(s) | 420 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 269 |
| Bse118I | RCCGGY | 1 cut(s) | 247 |
| BseDI | CCNNGG | 1 cut(s) | 420 |
| BseGI | GGATG | 1 cut(s) | 107 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 269 |
| BseMII | CTCAG | 1 cut(s) | 549 |
| BseXI | GCAGC | 2 cut(s) | 421, 616 |
| BshFI | GGCC | 4 cut(s) | 83, 247, 284, 620 |
| BsiSI | CCGG | 1 cut(s) | 248 |
| BslFI | GGGAC | 2 cut(s) | 241, 677 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 269 |
| BsmAI | GTCTC | 3 cut(s) | 210, 476, 508 |
| BsmFI | GGGAC | 2 cut(s) | 241, 677 |
| BsnI | GGCC | 4 cut(s) | 83, 247, 284, 620 |
| Bsp143I | GATC | 1 cut(s) | 182 |
| Bsp19I | CCATGG | 1 cut(s) | 420 |
| BspACI | CCGC | 2 cut(s) | 260, 369 |
| BspANI | GGCC | 4 cut(s) | 83, 247, 284, 620 |
| BspCNI | CTCAG | 1 cut(s) | 548 |
| BspLI | GGNNCC | 1 cut(s) | 257 |
| BspPI | GGATC | 1 cut(s) | 177 |
| BspQI | GCTCTTC | 1 cut(s) | 598 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BsrFI | RCCGGY | 1 cut(s) | 247 |
| BssAI | RCCGGY | 1 cut(s) | 247 |
| BssECI | CCNNGG | 1 cut(s) | 420 |
| BssMI | GATC | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 614 |
| Bst6I | CTCTTC | 2 cut(s) | 511, 598 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstBAI | YACGTR | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 4 cut(s) | 275, 376, 427, 439 |
| BstDEI | CTNAG | 2 cut(s) | 499, 535 |
| BstDSI | CCRYGG | 1 cut(s) | 420 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 267 |
| BstF5I | GGATG | 1 cut(s) | 107 |
| BstKTI | GATC | 1 cut(s) | 185 |
| BstMAI | GTCTC | 3 cut(s) | 210, 476, 508 |
| BstMBI | GATC | 1 cut(s) | 182 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 375, 416, 431, 626, 650 |
| BstNSI | RCATGY | 3 cut(s) | 378, 608, 692 |
| BstSFI | CTRYAG | 2 cut(s) | 411, 575 |
| BstV1I | GCAGC | 2 cut(s) | 421, 616 |
| BstX2I | RGATCY | 1 cut(s) | 182 |
| BstYI | RGATCY | 1 cut(s) | 182 |
| BsuRI | GGCC | 4 cut(s) | 83, 247, 284, 620 |
| BtgI | CCRYGG | 1 cut(s) | 420 |
| BtsCI | GGATG | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 4 cut(s) | 275, 376, 427, 439 |
| Cfr10I | RCCGGY | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 255 |
| Csp6I | GTAC | 4 cut(s) | 24, 36, 610, 729 |
| CviAII | CATG | 4 cut(s) | 375, 421, 605, 689 |
| CviQI | GTAC | 4 cut(s) | 24, 36, 610, 729 |
| DdeI | CTNAG | 2 cut(s) | 499, 535 |
| DpnI | GATC | 1 cut(s) | 184 |
| DpnII | GATC | 1 cut(s) | 182 |
| DriI | GACNNNNNGTC | 1 cut(s) | 489 |
| Eam1104I | CTCTTC | 2 cut(s) | 511, 598 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 489 |
| EarI | CTCTTC | 2 cut(s) | 511, 598 |
| Eco130I | CCWWGG | 1 cut(s) | 420 |
| Eco32I | GATATC | 1 cut(s) | 562 |
| Eco47I | GGWCC | 1 cut(s) | 255 |
| Eco57I | CTGAAG | 3 cut(s) | 252, 426, 546 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 267 |
| EcoRV | GATATC | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 1 cut(s) | 420 |
| EcoT22I | ATGCAT | 2 cut(s) | 352, 380 |
| ErhI | CCWWGG | 1 cut(s) | 420 |
| FaeI | CATG | 4 cut(s) | 378, 424, 608, 692 |
| FaiI | YATR | 8 cut(s) | 112, 194, 341, 376, 413, 422, 606, 690 |
| FaqI | GGGAC | 2 cut(s) | 241, 677 |
| FatI | CATG | 4 cut(s) | 374, 420, 604, 688 |
| FauI | CCCGC | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 2 cut(s) | 435, 630 |
| FokI | GGATG | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 2 cut(s) | 435, 630 |
| FspBI | CTAG | 2 cut(s) | 446, 584 |
| GluI | GCNGC | 2 cut(s) | 435, 630 |
| GsuI | CTGGAG | 2 cut(s) | 29, 681 |
| HaeIII | GGCC | 4 cut(s) | 83, 247, 284, 620 |
| HapII | CCGG | 1 cut(s) | 248 |
| Hin1II | CATG | 4 cut(s) | 378, 424, 608, 692 |
| HindIII | AAGCTT | 1 cut(s) | 709 |
| HinfI | GANTC | 1 cut(s) | 515 |
| HpaII | CCGG | 1 cut(s) | 248 |
| HphI | GGTGA | 1 cut(s) | 368 |
| Hpy166II | GTNNAC | 1 cut(s) | 610 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 177, 225 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 404, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 610 |
| HpyAV | CCTTC | 3 cut(s) | 14, 109, 273 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 614 |
| HpyCH4IV | ACGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 5 cut(s) | 169, 350, 374, 378, 429 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 375, 416, 431, 626, 650 |
| HpyF3I | CTNAG | 2 cut(s) | 499, 535 |
| HpySE526I | ACGT | 1 cut(s) | 343 |
| Hsp92II | CATG | 4 cut(s) | 378, 424, 608, 692 |
| Kzo9I | GATC | 1 cut(s) | 182 |
| LguI | GCTCTTC | 1 cut(s) | 598 |
| LmnI | GCTCC | 3 cut(s) | 10, 118, 446 |
| Lsp1109I | GCAGC | 2 cut(s) | 421, 616 |
| LweI | GCATC | 3 cut(s) | 56, 337, 387 |
| MaeI | CTAG | 2 cut(s) | 446, 584 |
| MaeII | ACGT | 1 cut(s) | 343 |
| MaeIII | GTNAC | 2 cut(s) | 214, 356 |
| MalI | GATC | 1 cut(s) | 184 |
| MboI | GATC | 1 cut(s) | 182 |
| MboII | GAAGA | 5 cut(s) | 258, 498, 539, 585, 654 |
| MfeI | CAATTG | 2 cut(s) | 30, 286 |
| MflI | RGATCY | 1 cut(s) | 182 |
| MluCI | AATT | 6 cut(s) | 30, 286, 388, 565, 637, 670 |
| MlyI | GAGTC | 1 cut(s) | 524 |
| MmeI | TCCRAC | 1 cut(s) | 79 |
| Mph1103I | ATGCAT | 2 cut(s) | 352, 380 |
| MseI | TTAA | 2 cut(s) | 279, 387 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspI | CCGG | 1 cut(s) | 248 |
| MunI | CAATTG | 2 cut(s) | 30, 286 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 375, 416, 431, 626, 650 |
| NcoI | CCATGG | 1 cut(s) | 420 |
| NdeII | GATC | 1 cut(s) | 182 |
| NlaIII | CATG | 4 cut(s) | 378, 424, 608, 692 |
| NlaIV | GGNNCC | 1 cut(s) | 257 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| NsiI | ATGCAT | 2 cut(s) | 352, 380 |
| NspI | RCATGY | 3 cut(s) | 378, 608, 692 |
| PaeI | GCATGC | 1 cut(s) | 378 |
| PciSI | GCTCTTC | 1 cut(s) | 598 |
| PkrI | GCNGC | 2 cut(s) | 436, 631 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| Ppu21I | YACGTR | 1 cut(s) | 344 |
| PspN4I | GGNNCC | 1 cut(s) | 257 |
| PspPI | GGNCC | 2 cut(s) | 82, 255 |
| PsuI | RGATCY | 1 cut(s) | 182 |
| RsaI | GTAC | 4 cut(s) | 25, 37, 611, 730 |
| RsaNI | GTAC | 4 cut(s) | 24, 36, 610, 729 |
| SapI | GCTCTTC | 1 cut(s) | 598 |
| SaqAI | TTAA | 2 cut(s) | 279, 387 |
| SatI | GCNGC | 2 cut(s) | 435, 630 |
| Sau3AI | GATC | 1 cut(s) | 182 |
| Sau96I | GGNCC | 2 cut(s) | 82, 255 |
| SchI | GAGTC | 1 cut(s) | 524 |
| SfaNI | GCATC | 3 cut(s) | 56, 337, 387 |
| SfcI | CTRYAG | 2 cut(s) | 411, 575 |
| SinI | GGWCC | 1 cut(s) | 255 |
| SmlI | CTYRAG | 1 cut(s) | 278 |
| SmoI | CTYRAG | 1 cut(s) | 278 |
| SphI | GCATGC | 1 cut(s) | 378 |
| Sse9I | AATT | 6 cut(s) | 30, 286, 388, 565, 637, 670 |
| SsiI | CCGC | 2 cut(s) | 260, 369 |
| SspMI | CTAG | 2 cut(s) | 446, 584 |
| StyI | CCWWGG | 1 cut(s) | 420 |
| TaaI | ACNGT | 2 cut(s) | 93, 614 |
| TaiI | ACGT | 1 cut(s) | 346 |
| TasI | AATT | 6 cut(s) | 30, 286, 388, 565, 637, 670 |
| Tru1I | TTAA | 2 cut(s) | 279, 387 |
| Tru9I | TTAA | 2 cut(s) | 279, 387 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 2 cut(s) | 434, 629 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 1 cut(s) | 255 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 267 |
| XceI | RCATGY | 3 cut(s) | 378, 608, 692 |
| XspI | CTAG | 2 cut(s) | 446, 584 |
| Zsp2I | ATGCAT | 2 cut(s) | 352, 380 |