ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Proteasom_PSMB | PF10508 | 62 - 511 | 7.7e-21 | Proteasome non-ATPase 26S subunit |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 362 |
| AccB1I | GGYRCC | 1 cut(s) | 1308 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 793, 1466 |
| AccI | GTMKAC | 2 cut(s) | 21, 1075 |
| AciI | CCGC | 5 cut(s) | 112, 614, 1191, 1268, 1478 |
| AclWI | GGATC | 3 cut(s) | 20, 1244, 1257 |
| AcsI | RAATTY | 3 cut(s) | 11, 101, 561 |
| AcuI | CTGAAG | 3 cut(s) | 36, 75, 459 |
| AfeI | AGCGCT | 1 cut(s) | 1464 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 604, 793, 1059, 1466 |
| AflIII | ACRYGT | 2 cut(s) | 1036, 1434 |
| AgsI | TTSAA | 5 cut(s) | 80, 208, 621, 962, 1452 |
| AhlI | ACTAGT | 1 cut(s) | 1148 |
| AjnI | CCWGG | 1 cut(s) | 163 |
| Alw21I | GWGCWC | 1 cut(s) | 1205 |
| Alw26I | GTCTC | 3 cut(s) | 598, 1250, 1495 |
| AlwI | GGATC | 3 cut(s) | 20, 1244, 1257 |
| Aor51HI | AGCGCT | 1 cut(s) | 1464 |
| ApeKI | GCWGC | 6 cut(s) | 47, 760, 763, 1028, 1085, 1295 |
| ApoI | RAATTY | 3 cut(s) | 11, 101, 561 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 584 |
| AspLEI | GCGC | 2 cut(s) | 1000, 1465 |
| AspS9I | GGNCC | 2 cut(s) | 109, 1508 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 2 cut(s) | 1011, 1564 |
| AsuII | TTCGAA | 2 cut(s) | 559, 645 |
| AvaII | GGWCC | 2 cut(s) | 109, 1508 |
| BamHI | GGATCC | 1 cut(s) | 1249 |
| BanI | GGYRCC | 1 cut(s) | 1308 |
| BanII | GRGCYC | 1 cut(s) | 1205 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1152, 1184 |
| BbsI | GAAGAC | 2 cut(s) | 841, 890 |
| Bbv12I | GWGCWC | 1 cut(s) | 1205 |
| BbvI | GCAGC | 6 cut(s) | 34, 750, 772, 1015, 1072, 1307 |
| BccI | CCATC | 1 cut(s) | 1225 |
| BceAI | ACGGC | 2 cut(s) | 285, 1440 |
| BciT130I | CCWGG | 1 cut(s) | 165 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 3 cut(s) | 598, 1250, 1495 |
| BcuI | ACTAGT | 1 cut(s) | 1148 |
| BfaI | CTAG | 5 cut(s) | 401, 1149, 1382, 1521, 1570 |
| BfmI | CTRYAG | 3 cut(s) | 429, 758, 1545 |
| BfoI | RGCGCY | 1 cut(s) | 1466 |
| BisI | GCNGC | 7 cut(s) | 48, 761, 764, 1029, 1086, 1296, 1479 |
| BlpI | GCTNAGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 7 cut(s) | 49, 762, 765, 1030, 1087, 1297, 1480 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 165 |
| Bme18I | GGWCC | 2 cut(s) | 109, 1508 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 1508 |
| BmiI | GGNNCC | 4 cut(s) | 1251, 1310, 1509, 1510 |
| BmrFI | CCNGG | 2 cut(s) | 72, 165 |
| BmrI | ACTGGG | 3 cut(s) | 557, 1296, 1514 |
| BmsI | GCATC | 8 cut(s) | 331, 539, 617, 925, 1144, 1202, 1348, 1537 |
| BmuI | ACTGGG | 3 cut(s) | 557, 1296, 1514 |
| BoxI | GACNNNNGTC | 1 cut(s) | 841 |
| BpiI | GAAGAC | 2 cut(s) | 841, 890 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1310, 1342 |
| BpmI | CTGGAG | 1 cut(s) | 1134 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 33 |
| Bpu14I | TTCGAA | 2 cut(s) | 559, 645 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaBI | GATNNNNATC | 1 cut(s) | 824 |
| BsaJI | CCNNGG | 3 cut(s) | 96, 180, 1304 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 330, 360, 686, 716 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 604, 793, 1059, 1466 |
| Bse1I | ACTGG | 6 cut(s) | 552, 787, 876, 1086, 1291, 1509 |
| Bse8I | GATNNNNATC | 1 cut(s) | 824 |
| BseBI | CCWGG | 1 cut(s) | 165 |
| BseDI | CCNNGG | 3 cut(s) | 96, 180, 1304 |
| BseGI | GGATG | 3 cut(s) | 129, 231, 1193 |
| BseJI | GATNNNNATC | 1 cut(s) | 824 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 604, 793, 1059, 1466 |
| BseMII | CTCAG | 4 cut(s) | 47, 293, 1119, 1248 |
| BseNI | ACTGG | 6 cut(s) | 552, 787, 876, 1086, 1291, 1509 |
| BseXI | GCAGC | 6 cut(s) | 34, 750, 772, 1015, 1072, 1307 |
| BseYI | CCCAGC | 2 cut(s) | 490, 1459 |
| BsgI | GTGCAG | 1 cut(s) | 336 |
| Bsh1285I | CGRYCG | 1 cut(s) | 21 |
| BshNI | GGYRCC | 1 cut(s) | 1308 |
| BsiEI | CGRYCG | 1 cut(s) | 21 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1205 |
| BsiSI | CCGG | 1 cut(s) | 72 |
| BslFI | GGGAC | 3 cut(s) | 564, 1080, 1494 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 604, 793, 1059, 1466 |
| BsmAI | GTCTC | 3 cut(s) | 598, 1250, 1495 |
| BsmFI | GGGAC | 3 cut(s) | 564, 1080, 1494 |
| BsmI | GAATGC | 1 cut(s) | 542 |
| Bsp119I | TTCGAA | 2 cut(s) | 559, 645 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1205 |
| Bsp143I | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 33 |
| Bsp19I | CCATGG | 1 cut(s) | 1304 |
| BspACI | CCGC | 5 cut(s) | 112, 614, 1191, 1268, 1478 |
| BspCNI | CTCAG | 4 cut(s) | 46, 292, 1120, 1247 |
| BspHI | TCATGA | 2 cut(s) | 931, 1531 |
| BspLI | GGNNCC | 4 cut(s) | 1251, 1310, 1509, 1510 |
| BspMAI | CTGCAG | 1 cut(s) | 762 |
| BspPI | GGATC | 3 cut(s) | 20, 1244, 1257 |
| BspT104I | TTCGAA | 2 cut(s) | 559, 645 |
| BspT107I | GGYRCC | 1 cut(s) | 1308 |
| BsrI | ACTGG | 6 cut(s) | 552, 787, 876, 1086, 1291, 1509 |
| BssECI | CCNNGG | 3 cut(s) | 96, 180, 1304 |
| BssMI | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 180, 1304 |
| Bst2UI | CCWGG | 1 cut(s) | 165 |
| Bst4CI | ACNGT | 7 cut(s) | 240, 310, 430, 688, 728, 889, 1011 |
| Bst6I | CTCTTC | 1 cut(s) | 126 |
| BstBI | TTCGAA | 2 cut(s) | 559, 645 |
| BstC8I | GCNNGC | 3 cut(s) | 472, 1095, 1300 |
| BstDEI | CTNAG | 6 cut(s) | 33, 279, 635, 767, 1128, 1234 |
| BstDSI | CCRYGG | 1 cut(s) | 1304 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1057 |
| BstF5I | GGATG | 3 cut(s) | 129, 231, 1193 |
| BstH2I | RGCGCY | 1 cut(s) | 1466 |
| BstHHI | GCGC | 2 cut(s) | 1000, 1465 |
| BstKTI | GATC | 5 cut(s) | 28, 720, 828, 1127, 1252 |
| BstMAI | GTCTC | 3 cut(s) | 598, 1250, 1495 |
| BstMBI | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| BstMCI | CGRYCG | 1 cut(s) | 21 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 350, 440, 962, 997, 1094, 1109, 1173, 1308 |
| BstNI | CCWGG | 1 cut(s) | 165 |
| BstNSI | RCATGY | 3 cut(s) | 1040, 1097, 1438 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 841 |
| BstSCI | CCNGG | 2 cut(s) | 70, 163 |
| BstSFI | CTRYAG | 3 cut(s) | 429, 758, 1545 |
| BstV1I | GCAGC | 6 cut(s) | 34, 750, 772, 1015, 1072, 1307 |
| BstV2I | GAAGAC | 2 cut(s) | 841, 890 |
| BstX2I | RGATCY | 1 cut(s) | 1249 |
| BstYI | RGATCY | 1 cut(s) | 1249 |
| BtgI | CCRYGG | 1 cut(s) | 1304 |
| BtgZI | GCGATG | 2 cut(s) | 833, 1093 |
| BtsCI | GGATG | 3 cut(s) | 129, 231, 1193 |
| BtsIMutI | CAGTG | 2 cut(s) | 545, 883 |
| Cac8I | GCNNGC | 3 cut(s) | 472, 1095, 1300 |
| CciI | TCATGA | 2 cut(s) | 931, 1531 |
| CfoI | GCGC | 2 cut(s) | 1000, 1465 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 1508 |
| CseI | GACGC | 2 cut(s) | 95, 1182 |
| DdeI | CTNAG | 6 cut(s) | 33, 279, 635, 767, 1128, 1234 |
| DpnI | GATC | 5 cut(s) | 27, 719, 827, 1126, 1251 |
| DpnII | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| Eam1104I | CTCTTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 1 cut(s) | 126 |
| Ecl136II | GAGCTC | 1 cut(s) | 1203 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 180, 1304 |
| Eco24I | GRGCYC | 1 cut(s) | 1205 |
| Eco47I | GGWCC | 2 cut(s) | 109, 1508 |
| Eco47III | AGCGCT | 1 cut(s) | 1464 |
| Eco53kI | GAGCTC | 1 cut(s) | 1203 |
| Eco57I | CTGAAG | 3 cut(s) | 36, 75, 459 |
| EcoICRI | GAGCTC | 1 cut(s) | 1203 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1057 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1508 |
| EcoRI | GAATTC | 1 cut(s) | 11 |
| EcoRII | CCWGG | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 180, 1304 |
| EcoT38I | GRGCYC | 1 cut(s) | 1205 |
| ErhI | CCWWGG | 3 cut(s) | 96, 180, 1304 |
| FaqI | GGGAC | 3 cut(s) | 564, 1080, 1494 |
| FauI | CCCGC | 1 cut(s) | 1261 |
| FblI | GTMKAC | 2 cut(s) | 21, 1075 |
| Fnu4HI | GCNGC | 7 cut(s) | 48, 761, 764, 1029, 1086, 1296, 1479 |
| FokI | GGATG | 3 cut(s) | 116, 218, 1180 |
| FriOI | GRGCYC | 1 cut(s) | 1205 |
| Fsp4HI | GCNGC | 7 cut(s) | 48, 761, 764, 1029, 1086, 1296, 1479 |
| FspBI | CTAG | 5 cut(s) | 401, 1149, 1382, 1521, 1570 |
| GlaI | GCGC | 2 cut(s) | 999, 1464 |
| GluI | GCNGC | 7 cut(s) | 48, 761, 764, 1029, 1086, 1296, 1479 |
| GsaI | CCCAGC | 2 cut(s) | 494, 1463 |
| GsuI | CTGGAG | 1 cut(s) | 1134 |
| HaeII | RGCGCY | 1 cut(s) | 1466 |
| HapII | CCGG | 1 cut(s) | 72 |
| HgaI | GACGC | 2 cut(s) | 95, 1182 |
| HhaI | GCGC | 2 cut(s) | 1000, 1465 |
| Hin6I | GCGC | 2 cut(s) | 998, 1463 |
| HinP1I | GCGC | 2 cut(s) | 998, 1463 |
| HincII | GTYRAC | 3 cut(s) | 22, 744, 1212 |
| HindII | GTYRAC | 3 cut(s) | 22, 744, 1212 |
| HindIII | AAGCTT | 1 cut(s) | 1445 |
| HinfI | GANTC | 6 cut(s) | 275, 797, 872, 950, 1258, 1566 |
| HpaII | CCGG | 1 cut(s) | 72 |
| HphI | GGTGA | 2 cut(s) | 1011, 1564 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 744, 1076, 1212 |
| Hpy188I | TCNGA | 8 cut(s) | 55, 267, 282, 535, 715, 868, 925, 1129 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 107, 323, 932, 959, 1253, 1532 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 744, 1076, 1212 |
| Hpy99I | CGWCG | 3 cut(s) | 26, 89, 1176 |
| HpyAV | CCTTC | 2 cut(s) | 329, 764 |
| HpyCH4III | ACNGT | 7 cut(s) | 240, 310, 430, 688, 728, 889, 1011 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 350, 440, 962, 997, 1094, 1109, 1173, 1308 |
| HpyF3I | CTNAG | 6 cut(s) | 33, 279, 635, 767, 1128, 1234 |
| HspAI | GCGC | 2 cut(s) | 998, 1463 |
| KflI | GGGWCCC | 1 cut(s) | 1508 |
| Kzo9I | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| LmnI | GCTCC | 2 cut(s) | 694, 995 |
| Lsp1109I | GCAGC | 6 cut(s) | 34, 750, 772, 1015, 1072, 1307 |
| LweI | GCATC | 8 cut(s) | 331, 539, 617, 925, 1144, 1202, 1348, 1537 |
| MaeI | CTAG | 5 cut(s) | 401, 1149, 1382, 1521, 1570 |
| MaeIII | GTNAC | 4 cut(s) | 310, 421, 1351, 1552 |
| MalI | GATC | 5 cut(s) | 27, 719, 827, 1126, 1251 |
| MboI | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| MboII | GAAGA | 5 cut(s) | 20, 113, 846, 895, 1172 |
| MfeI | CAATTG | 1 cut(s) | 1001 |
| MflI | RGATCY | 1 cut(s) | 1249 |
| MhlI | GDGCHC | 1 cut(s) | 1205 |
| MlyI | GAGTC | 2 cut(s) | 791, 1252 |
| MmeI | TCCRAC | 1 cut(s) | 1267 |
| MnlI | CCTC | 5 cut(s) | 129, 143, 393, 1241, 1322 |
| MroXI | GAANNNNTTC | 1 cut(s) | 584 |
| MseI | TTAA | 4 cut(s) | 572, 657, 683, 1431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 535 |
| MspA1I | CMGCKG | 3 cut(s) | 614, 763, 1028 |
| MspI | CCGG | 1 cut(s) | 72 |
| MspR9I | CCNGG | 2 cut(s) | 72, 165 |
| MunI | CAATTG | 1 cut(s) | 1001 |
| Mva1269I | GAATGC | 1 cut(s) | 542 |
| MvaI | CCWGG | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 350, 440, 962, 997, 1094, 1109, 1173, 1308 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NcoI | CCATGG | 1 cut(s) | 1304 |
| NdeII | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| NlaIV | GGNNCC | 4 cut(s) | 1251, 1310, 1509, 1510 |
| NmuCI | GTSAC | 2 cut(s) | 1351, 1552 |
| NspI | RCATGY | 3 cut(s) | 1040, 1097, 1438 |
| NspV | TTCGAA | 2 cut(s) | 559, 645 |
| PaeI | GCATGC | 1 cut(s) | 1097 |
| PagI | TCATGA | 2 cut(s) | 931, 1531 |
| PciI | ACATGT | 2 cut(s) | 1036, 1434 |
| PctI | GAATGC | 1 cut(s) | 542 |
| PdmI | GAANNNNTTC | 1 cut(s) | 584 |
| PfeI | GAWTC | 4 cut(s) | 275, 872, 950, 1566 |
| PflFI | GACNNNGTC | 1 cut(s) | 1506 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 793, 1466 |
| PfoI | TCCNGGA | 1 cut(s) | 70 |
| PkrI | GCNGC | 7 cut(s) | 49, 762, 765, 1030, 1087, 1297, 1480 |
| PleI | GAGTC | 2 cut(s) | 791, 1252 |
| PpsI | GAGTC | 2 cut(s) | 791, 1252 |
| PpuMI | RGGWCCY | 1 cut(s) | 1508 |
| PscI | ACATGT | 2 cut(s) | 1036, 1434 |
| PshAI | GACNNNNGTC | 1 cut(s) | 841 |
| PsiI | TTATAA | 1 cut(s) | 362 |
| Psp124BI | GAGCTC | 1 cut(s) | 1205 |
| Psp5II | RGGWCCY | 1 cut(s) | 1508 |
| Psp6I | CCWGG | 1 cut(s) | 163 |
| PspFI | CCCAGC | 2 cut(s) | 490, 1459 |
| PspGI | CCWGG | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 4 cut(s) | 1251, 1310, 1509, 1510 |
| PspPI | GGNCC | 2 cut(s) | 109, 1508 |
| PspPPI | RGGWCCY | 1 cut(s) | 1508 |
| PstI | CTGCAG | 1 cut(s) | 762 |
| PsuI | RGATCY | 1 cut(s) | 1249 |
| PsyI | GACNNNGTC | 1 cut(s) | 1506 |
| PvuII | CAGCTG | 2 cut(s) | 763, 1028 |
| RseI | CAYNNNNRTG | 1 cut(s) | 535 |
| SacI | GAGCTC | 1 cut(s) | 1205 |
| SalI | GTCGAC | 1 cut(s) | 20 |
| SaqAI | TTAA | 4 cut(s) | 572, 657, 683, 1431 |
| SatI | GCNGC | 7 cut(s) | 48, 761, 764, 1029, 1086, 1296, 1479 |
| Sau3AI | GATC | 5 cut(s) | 25, 717, 825, 1124, 1249 |
| Sau96I | GGNCC | 2 cut(s) | 109, 1508 |
| SchI | GAGTC | 2 cut(s) | 791, 1252 |
| ScrFI | CCNGG | 2 cut(s) | 72, 165 |
| SduI | GDGCHC | 1 cut(s) | 1205 |
| SfaNI | GCATC | 8 cut(s) | 331, 539, 617, 925, 1144, 1202, 1348, 1537 |
| SfcI | CTRYAG | 3 cut(s) | 429, 758, 1545 |
| SfuI | TTCGAA | 2 cut(s) | 559, 645 |
| SinI | GGWCC | 2 cut(s) | 109, 1508 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 535 |
| SpeI | ACTAGT | 1 cut(s) | 1148 |
| SphI | GCATGC | 1 cut(s) | 1097 |
| SsiI | CCGC | 5 cut(s) | 112, 614, 1191, 1268, 1478 |
| SspMI | CTAG | 5 cut(s) | 401, 1149, 1382, 1521, 1570 |
| SstI | GAGCTC | 1 cut(s) | 1205 |
| StyD4I | CCNGG | 2 cut(s) | 70, 163 |
| StyI | CCWWGG | 3 cut(s) | 96, 180, 1304 |
| TaaI | ACNGT | 7 cut(s) | 240, 310, 430, 688, 728, 889, 1011 |
| TaqI | TCGA | 7 cut(s) | 21, 42, 324, 559, 645, 845, 1123 |
| TaqII | GACCGA | 1 cut(s) | 7 |
| TauI | GCSGC | 1 cut(s) | 1481 |
| TfiI | GAWTC | 4 cut(s) | 275, 872, 950, 1566 |
| Tru1I | TTAA | 4 cut(s) | 572, 657, 683, 1431 |
| Tru9I | TTAA | 4 cut(s) | 572, 657, 683, 1431 |
| TscAI | CASTG | 2 cut(s) | 552, 883 |
| TseFI | GTSAC | 2 cut(s) | 1351, 1552 |
| TseI | GCWGC | 6 cut(s) | 47, 760, 763, 1028, 1085, 1295 |
| Tsp45I | GTSAC | 2 cut(s) | 1351, 1552 |
| TspDTI | ATGAA | 9 cut(s) | 241, 429, 519, 885, 909, 957, 1200, 1506, 1548 |
| TspRI | CASTG | 2 cut(s) | 552, 883 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1506 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 793, 1466 |
| VpaK11BI | GGWCC | 2 cut(s) | 109, 1508 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1057 |
| XapI | RAATTY | 3 cut(s) | 11, 101, 561 |
| XceI | RCATGY | 3 cut(s) | 1040, 1097, 1438 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XmiI | GTMKAC | 2 cut(s) | 21, 1075 |
| XmnI | GAANNNNTTC | 1 cut(s) | 584 |
| XspI | CTAG | 5 cut(s) | 401, 1149, 1382, 1521, 1570 |