ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 218, 586 |
| AciI | CCGC | 2 cut(s) | 53, 188 |
| AcsI | RAATTY | 1 cut(s) | 526 |
| AfaI | GTAC | 2 cut(s) | 286, 673 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 586 |
| AgeI | ACCGGT | 1 cut(s) | 713 |
| AgsI | TTSAA | 4 cut(s) | 84, 408, 553, 726 |
| AluBI | AGCT | 6 cut(s) | 20, 65, 224, 332, 401, 754 |
| AluI | AGCT | 6 cut(s) | 20, 65, 224, 332, 401, 754 |
| Alw21I | GWGCWC | 1 cut(s) | 226 |
| ApeKI | GCWGC | 2 cut(s) | 62, 517 |
| ApoI | RAATTY | 1 cut(s) | 526 |
| AsiGI | ACCGGT | 1 cut(s) | 713 |
| AsuC2I | CCSGG | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 313, 583 |
| AxyI | CCTNAGG | 1 cut(s) | 567 |
| BanII | GRGCYC | 1 cut(s) | 226 |
| Bbv12I | GWGCWC | 1 cut(s) | 226 |
| BbvI | GCAGC | 2 cut(s) | 74, 529 |
| BclI | TGATCA | 1 cut(s) | 477 |
| BcnI | CCSGG | 1 cut(s) | 463 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BfuAI | ACCTGC | 1 cut(s) | 511 |
| BglII | AGATCT | 1 cut(s) | 659 |
| BisI | GCNGC | 2 cut(s) | 63, 518 |
| BlsI | GCNGC | 2 cut(s) | 64, 519 |
| Bme1390I | CCNGG | 1 cut(s) | 463 |
| BmrFI | CCNGG | 1 cut(s) | 463 |
| BmsI | GCATC | 3 cut(s) | 130, 464, 518 |
| BpuMI | CCSGG | 1 cut(s) | 463 |
| BsaWI | WCCGGW | 2 cut(s) | 253, 713 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 586 |
| Bse118I | RCCGGY | 1 cut(s) | 713 |
| Bse21I | CCTNAGG | 1 cut(s) | 567 |
| BseGI | GGATG | 2 cut(s) | 10, 46 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 586 |
| BseMII | CTCAG | 1 cut(s) | 581 |
| BseRI | GAGGAG | 3 cut(s) | 167, 362, 387 |
| BseXI | GCAGC | 2 cut(s) | 74, 529 |
| BshTI | ACCGGT | 1 cut(s) | 713 |
| BsiHKAI | GWGCWC | 1 cut(s) | 226 |
| BsiSI | CCGG | 3 cut(s) | 254, 463, 714 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 586 |
| BsmI | GAATGC | 3 cut(s) | 8, 322, 639 |
| Bsp1286I | GDGCHC | 1 cut(s) | 226 |
| Bsp143I | GATC | 3 cut(s) | 271, 477, 659 |
| BspACI | CCGC | 2 cut(s) | 53, 188 |
| BspCNI | CTCAG | 1 cut(s) | 580 |
| BspMI | ACCTGC | 1 cut(s) | 511 |
| BsrFI | RCCGGY | 1 cut(s) | 713 |
| BssAI | RCCGGY | 1 cut(s) | 713 |
| BssMI | GATC | 3 cut(s) | 271, 477, 659 |
| BstDEI | CTNAG | 4 cut(s) | 259, 567, 702, 734 |
| BstF5I | GGATG | 2 cut(s) | 10, 46 |
| BstKTI | GATC | 3 cut(s) | 274, 480, 662 |
| BstMBI | GATC | 3 cut(s) | 271, 477, 659 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 194 |
| BstNSI | RCATGY | 1 cut(s) | 442 |
| BstSCI | CCNGG | 1 cut(s) | 461 |
| BstV1I | GCAGC | 2 cut(s) | 74, 529 |
| BstX2I | RGATCY | 1 cut(s) | 659 |
| BstYI | RGATCY | 1 cut(s) | 659 |
| Bsu36I | CCTNAGG | 1 cut(s) | 567 |
| BtsCI | GGATG | 2 cut(s) | 10, 46 |
| BtsI | GCAGTG | 1 cut(s) | 123 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| BveI | ACCTGC | 1 cut(s) | 511 |
| Cfr10I | RCCGGY | 1 cut(s) | 713 |
| Csp6I | GTAC | 2 cut(s) | 285, 672 |
| CspAI | ACCGGT | 1 cut(s) | 713 |
| CviAII | CATG | 4 cut(s) | 269, 313, 439, 623 |
| CviJI | RGCY | 8 cut(s) | 20, 65, 177, 224, 332, 401, 579, 754 |
| CviKI_1 | RGCY | 8 cut(s) | 20, 65, 177, 224, 332, 401, 579, 754 |
| CviQI | GTAC | 2 cut(s) | 285, 672 |
| DdeI | CTNAG | 4 cut(s) | 259, 567, 702, 734 |
| DpnI | GATC | 3 cut(s) | 273, 479, 661 |
| DpnII | GATC | 3 cut(s) | 271, 477, 659 |
| DraI | TTTAAA | 1 cut(s) | 133 |
| Ecl136II | GAGCTC | 1 cut(s) | 224 |
| Eco24I | GRGCYC | 1 cut(s) | 226 |
| Eco53kI | GAGCTC | 1 cut(s) | 224 |
| Eco81I | CCTNAGG | 1 cut(s) | 567 |
| EcoICRI | GAGCTC | 1 cut(s) | 224 |
| EcoT22I | ATGCAT | 1 cut(s) | 10 |
| EcoT38I | GRGCYC | 1 cut(s) | 226 |
| FaeI | CATG | 4 cut(s) | 272, 316, 442, 626 |
| FatI | CATG | 4 cut(s) | 268, 312, 438, 622 |
| FbaI | TGATCA | 1 cut(s) | 477 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 518 |
| FokI | GGATG | 2 cut(s) | 17, 53 |
| FriOI | GRGCYC | 1 cut(s) | 226 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 518 |
| FspBI | CTAG | 1 cut(s) | 26 |
| GluI | GCNGC | 2 cut(s) | 63, 518 |
| HapII | CCGG | 3 cut(s) | 254, 463, 714 |
| Hin1II | CATG | 4 cut(s) | 272, 316, 442, 626 |
| HinfI | GANTC | 2 cut(s) | 80, 730 |
| HpaII | CCGG | 3 cut(s) | 254, 463, 714 |
| HphI | GGTGA | 3 cut(s) | 89, 313, 583 |
| Hpy166II | GTNNAC | 2 cut(s) | 251, 383 |
| Hpy188I | TCNGA | 1 cut(s) | 687 |
| Hpy8I | GTNNAC | 2 cut(s) | 251, 383 |
| HpyAV | CCTTC | 3 cut(s) | 167, 414, 682 |
| HpyCH4IV | ACGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 9 cut(s) | 8, 33, 121, 232, 428, 532, 607, 680, 743 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 194 |
| HpyF3I | CTNAG | 4 cut(s) | 259, 567, 702, 734 |
| HpySE526I | ACGT | 1 cut(s) | 136 |
| Hsp92II | CATG | 4 cut(s) | 272, 316, 442, 626 |
| Ksp22I | TGATCA | 1 cut(s) | 477 |
| Kzo9I | GATC | 3 cut(s) | 271, 477, 659 |
| LmnI | GCTCC | 6 cut(s) | 59, 221, 229, 337, 406, 751 |
| LpnPI | CCDG | 6 cut(s) | 267, 476, 498, 506, 554, 727 |
| Lsp1109I | GCAGC | 2 cut(s) | 74, 529 |
| LweI | GCATC | 3 cut(s) | 130, 464, 518 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MaeII | ACGT | 1 cut(s) | 136 |
| MaeIII | GTNAC | 2 cut(s) | 301, 571 |
| MalI | GATC | 3 cut(s) | 273, 479, 661 |
| MboI | GATC | 3 cut(s) | 271, 477, 659 |
| MboII | GAAGA | 1 cut(s) | 272 |
| MflI | RGATCY | 1 cut(s) | 659 |
| MhlI | GDGCHC | 1 cut(s) | 226 |
| MluCI | AATT | 4 cut(s) | 466, 526, 664, 694 |
| MmeI | TCCRAC | 2 cut(s) | 199, 349 |
| MnlI | CCTC | 7 cut(s) | 145, 187, 256, 340, 365, 370, 576 |
| Mph1103I | ATGCAT | 1 cut(s) | 10 |
| MseI | TTAA | 2 cut(s) | 132, 762 |
| MspI | CCGG | 3 cut(s) | 254, 463, 714 |
| MspR9I | CCNGG | 1 cut(s) | 463 |
| MssI | GTTTAAAC | 1 cut(s) | 133 |
| Mva1269I | GAATGC | 3 cut(s) | 8, 322, 639 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 194 |
| NciI | CCSGG | 1 cut(s) | 463 |
| NdeII | GATC | 3 cut(s) | 271, 477, 659 |
| NlaIII | CATG | 4 cut(s) | 272, 316, 442, 626 |
| NmuCI | GTSAC | 2 cut(s) | 301, 571 |
| NsiI | ATGCAT | 1 cut(s) | 10 |
| NspI | RCATGY | 1 cut(s) | 442 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 142, 280 |
| PctI | GAATGC | 3 cut(s) | 8, 322, 639 |
| PfeI | GAWTC | 2 cut(s) | 80, 730 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 218, 586 |
| PinAI | ACCGGT | 1 cut(s) | 713 |
| PkrI | GCNGC | 2 cut(s) | 64, 519 |
| PmeI | GTTTAAAC | 1 cut(s) | 133 |
| Psp124BI | GAGCTC | 1 cut(s) | 226 |
| PsuI | RGATCY | 1 cut(s) | 659 |
| RsaI | GTAC | 2 cut(s) | 286, 673 |
| RsaNI | GTAC | 2 cut(s) | 285, 672 |
| SacI | GAGCTC | 1 cut(s) | 226 |
| SaqAI | TTAA | 2 cut(s) | 132, 762 |
| SatI | GCNGC | 2 cut(s) | 63, 518 |
| Sau3AI | GATC | 3 cut(s) | 271, 477, 659 |
| ScrFI | CCNGG | 1 cut(s) | 463 |
| SduI | GDGCHC | 1 cut(s) | 226 |
| SfaNI | GCATC | 3 cut(s) | 130, 464, 518 |
| Sse9I | AATT | 4 cut(s) | 466, 526, 664, 694 |
| SsiI | CCGC | 2 cut(s) | 53, 188 |
| SspI | AATATT | 1 cut(s) | 356 |
| SspMI | CTAG | 1 cut(s) | 26 |
| SstI | GAGCTC | 1 cut(s) | 226 |
| StyD4I | CCNGG | 1 cut(s) | 461 |
| TaiI | ACGT | 1 cut(s) | 139 |
| TaqI | TCGA | 1 cut(s) | 245 |
| TasI | AATT | 4 cut(s) | 466, 526, 664, 694 |
| TfiI | GAWTC | 2 cut(s) | 80, 730 |
| Tru1I | TTAA | 2 cut(s) | 132, 762 |
| Tru9I | TTAA | 2 cut(s) | 132, 762 |
| TscAI | CASTG | 1 cut(s) | 123 |
| TseFI | GTSAC | 2 cut(s) | 301, 571 |
| TseI | GCWGC | 2 cut(s) | 62, 517 |
| Tsp45I | GTSAC | 2 cut(s) | 301, 571 |
| TspDTI | ATGAA | 3 cut(s) | 186, 329, 411 |
| TspGWI | ACGGA | 1 cut(s) | 400 |
| TspRI | CASTG | 1 cut(s) | 123 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 218, 586 |
| XapI | RAATTY | 1 cut(s) | 526 |
| XceI | RCATGY | 1 cut(s) | 442 |
| XspI | CTAG | 1 cut(s) | 26 |
| Zsp2I | ATGCAT | 1 cut(s) | 10 |