ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1538 |
| AccB1I | GGYRCC | 1 cut(s) | 554 |
| AccI | GTMKAC | 1 cut(s) | 1717 |
| AciI | CCGC | 6 cut(s) | 95, 811, 1505, 1508, 1511, 1550 |
| AclI | AACGTT | 1 cut(s) | 724 |
| AclWI | GGATC | 4 cut(s) | 86, 179, 911, 924 |
| AcsI | RAATTY | 3 cut(s) | 409, 766, 1264 |
| AcvI | CACGTG | 1 cut(s) | 466 |
| AcyI | GRCGYC | 2 cut(s) | 555, 1535 |
| AfaI | GTAC | 4 cut(s) | 159, 265, 308, 1776 |
| AfeI | AGCGCT | 1 cut(s) | 443 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 74, 672, 1406 |
| AflIII | ACRYGT | 1 cut(s) | 992 |
| AgsI | TTSAA | 4 cut(s) | 502, 1342, 1571, 1597 |
| AhlI | ACTAGT | 1 cut(s) | 1636 |
| AleI | CACNNNNGTG | 2 cut(s) | 17, 747 |
| Alw26I | GTCTC | 1 cut(s) | 1613 |
| AlwI | GGATC | 4 cut(s) | 86, 179, 911, 924 |
| Ama87I | CYCGRG | 1 cut(s) | 72 |
| Aor51HI | AGCGCT | 1 cut(s) | 443 |
| AoxI | GGCC | 2 cut(s) | 1295, 1560 |
| ApeKI | GCWGC | 4 cut(s) | 163, 1136, 1154, 1307 |
| ApoI | RAATTY | 3 cut(s) | 409, 766, 1264 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| AspA2I | CCTAGG | 1 cut(s) | 962 |
| AspLEI | GCGC | 4 cut(s) | 444, 537, 557, 665 |
| AspS9I | GGNCC | 1 cut(s) | 1561 |
| AsuC2I | CCSGG | 1 cut(s) | 559 |
| AsuHPI | GGTGA | 8 cut(s) | 4, 49, 56, 93, 692, 1505, 1530, 1711 |
| AvaI | CYCGRG | 1 cut(s) | 72 |
| AvrII | CCTAGG | 1 cut(s) | 962 |
| AxyI | CCTNAGG | 1 cut(s) | 870 |
| BamHI | GGATCC | 1 cut(s) | 916 |
| BanI | GGYRCC | 1 cut(s) | 554 |
| BbrPI | CACGTG | 1 cut(s) | 466 |
| BbvI | GCAGC | 4 cut(s) | 175, 1141, 1148, 1319 |
| BccI | CCATC | 6 cut(s) | 17, 76, 1079, 1424, 1552, 1859 |
| BcnI | CCSGG | 1 cut(s) | 559 |
| BcoDI | GTCTC | 1 cut(s) | 1613 |
| BcuI | ACTAGT | 1 cut(s) | 1636 |
| BfaI | CTAG | 3 cut(s) | 401, 963, 1637 |
| BfoI | RGCGCY | 2 cut(s) | 445, 558 |
| BisI | GCNGC | 6 cut(s) | 164, 1137, 1155, 1308, 1506, 1509 |
| BlnI | CCTAGG | 1 cut(s) | 962 |
| BlsI | GCNGC | 6 cut(s) | 165, 1138, 1156, 1309, 1507, 1510 |
| Bme1390I | CCNGG | 1 cut(s) | 559 |
| BmeT110I | CYCGRG | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 1 cut(s) | 1561 |
| BmiI | GGNNCC | 3 cut(s) | 556, 597, 918 |
| BmrFI | CCNGG | 1 cut(s) | 559 |
| BmsI | GCATC | 4 cut(s) | 235, 494, 832, 1837 |
| BpmI | CTGGAG | 1 cut(s) | 1179 |
| BpuEI | CTTGAG | 1 cut(s) | 1104 |
| BpuMI | CCSGG | 1 cut(s) | 559 |
| BsaAI | YACGTR | 1 cut(s) | 466 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1866 |
| BsaHI | GRCGYC | 2 cut(s) | 555, 1535 |
| BsaJI | CCNNGG | 1 cut(s) | 962 |
| BsaWI | WCCGGW | 2 cut(s) | 913, 1399 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 175, 205, 266, 296, 979, 1009, 1394, 1424 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 74, 672, 1406 |
| Bse1I | ACTGG | 1 cut(s) | 779 |
| Bse21I | CCTNAGG | 1 cut(s) | 870 |
| Bse3DI | GCAATG | 5 cut(s) | 173, 795, 876, 974, 1440 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1866 |
| BseDI | CCNNGG | 1 cut(s) | 962 |
| BseGI | GGATG | 3 cut(s) | 823, 1489, 1852 |
| BseJI | GATNNNNATC | 1 cut(s) | 1866 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 74, 672, 1406 |
| BseMI | GCAATG | 5 cut(s) | 173, 795, 876, 974, 1440 |
| BseMII | CTCAG | 3 cut(s) | 678, 819, 861 |
| BseNI | ACTGG | 1 cut(s) | 779 |
| BseRI | GAGGAG | 2 cut(s) | 704, 1473 |
| BseXI | GCAGC | 4 cut(s) | 175, 1141, 1148, 1319 |
| BsgI | GTGCAG | 2 cut(s) | 144, 635 |
| BshFI | GGCC | 2 cut(s) | 1297, 1562 |
| BshNI | GGYRCC | 1 cut(s) | 554 |
| BsiHKCI | CYCGRG | 1 cut(s) | 72 |
| BsiSI | CCGG | 4 cut(s) | 558, 666, 914, 1400 |
| BslFI | GGGAC | 2 cut(s) | 483, 1061 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 74, 672, 1406 |
| BsmAI | GTCTC | 1 cut(s) | 1613 |
| BsmFI | GGGAC | 2 cut(s) | 483, 1061 |
| BsmI | GAATGC | 1 cut(s) | 955 |
| BsnI | GGCC | 2 cut(s) | 1297, 1562 |
| BsoBI | CYCGRG | 1 cut(s) | 72 |
| Bsp1407I | TGTACA | 2 cut(s) | 157, 306 |
| Bsp143I | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| BspACI | CCGC | 6 cut(s) | 95, 811, 1505, 1508, 1511, 1550 |
| BspANI | GGCC | 2 cut(s) | 1297, 1562 |
| BspCNI | CTCAG | 3 cut(s) | 679, 820, 862 |
| BspHI | TCATGA | 1 cut(s) | 1078 |
| BspLI | GGNNCC | 3 cut(s) | 556, 597, 918 |
| BspPI | GGATC | 4 cut(s) | 86, 179, 911, 924 |
| BspT107I | GGYRCC | 1 cut(s) | 554 |
| BsrDI | GCAATG | 5 cut(s) | 173, 795, 876, 974, 1440 |
| BsrGI | TGTACA | 2 cut(s) | 157, 306 |
| BsrI | ACTGG | 1 cut(s) | 779 |
| BssECI | CCNNGG | 1 cut(s) | 962 |
| BssMI | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| BssNI | GRCGYC | 2 cut(s) | 555, 1535 |
| BssT1I | CCWWGG | 1 cut(s) | 962 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 595, 1427 |
| Bst6I | CTCTTC | 1 cut(s) | 273 |
| BstACI | GRCGYC | 2 cut(s) | 555, 1535 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 980, 1787 |
| BstAUI | TGTACA | 2 cut(s) | 157, 306 |
| BstBAI | YACGTR | 1 cut(s) | 466 |
| BstC8I | GCNNGC | 4 cut(s) | 981, 1447, 1526, 1644 |
| BstDEI | CTNAG | 5 cut(s) | 540, 687, 828, 870, 895 |
| BstF5I | GGATG | 3 cut(s) | 823, 1489, 1852 |
| BstH2I | RGCGCY | 2 cut(s) | 445, 558 |
| BstHHI | GCGC | 4 cut(s) | 444, 537, 557, 665 |
| BstKTI | GATC | 6 cut(s) | 94, 174, 649, 716, 919, 1180 |
| BstMAI | GTCTC | 1 cut(s) | 1613 |
| BstMBI | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 794, 980, 1160, 1442, 1787 |
| BstNSI | RCATGY | 4 cut(s) | 983, 996, 1154, 1646 |
| BstSCI | CCNGG | 1 cut(s) | 557 |
| BstV1I | GCAGC | 4 cut(s) | 175, 1141, 1148, 1319 |
| BstX2I | RGATCY | 2 cut(s) | 91, 916 |
| BstYI | RGATCY | 2 cut(s) | 91, 916 |
| Bsu36I | CCTNAGG | 1 cut(s) | 870 |
| BsuRI | GGCC | 2 cut(s) | 1297, 1562 |
| BtsCI | GGATG | 3 cut(s) | 823, 1489, 1852 |
| BtsI | GCAGTG | 1 cut(s) | 588 |
| BtsIMutI | CAGTG | 4 cut(s) | 24, 588, 772, 1432 |
| Cac8I | GCNNGC | 4 cut(s) | 981, 1447, 1526, 1644 |
| CciI | TCATGA | 1 cut(s) | 1078 |
| CfoI | GCGC | 4 cut(s) | 444, 537, 557, 665 |
| Cfr13I | GGNCC | 1 cut(s) | 1561 |
| CseI | GACGC | 1 cut(s) | 480 |
| Csp6I | GTAC | 4 cut(s) | 158, 264, 307, 1775 |
| CviQI | GTAC | 4 cut(s) | 158, 264, 307, 1775 |
| DdeI | CTNAG | 5 cut(s) | 540, 687, 828, 870, 895 |
| DinI | GGCGCC | 1 cut(s) | 556 |
| DpnI | GATC | 6 cut(s) | 93, 173, 648, 715, 918, 1179 |
| DpnII | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| DraI | TTTAAA | 1 cut(s) | 763 |
| Eam1104I | CTCTTC | 1 cut(s) | 273 |
| EarI | CTCTTC | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 962 |
| Eco147I | AGGCCT | 1 cut(s) | 1297 |
| Eco47III | AGCGCT | 1 cut(s) | 443 |
| Eco72I | CACGTG | 1 cut(s) | 466 |
| Eco81I | CCTNAGG | 1 cut(s) | 870 |
| Eco88I | CYCGRG | 1 cut(s) | 72 |
| EcoRI | GAATTC | 1 cut(s) | 1264 |
| EcoT14I | CCWWGG | 1 cut(s) | 962 |
| EcoT22I | ATGCAT | 1 cut(s) | 1389 |
| EgeI | GGCGCC | 1 cut(s) | 556 |
| EheI | GGCGCC | 1 cut(s) | 556 |
| ErhI | CCWWGG | 1 cut(s) | 962 |
| FaqI | GGGAC | 2 cut(s) | 483, 1061 |
| FauNDI | CATATG | 1 cut(s) | 313 |
| FblI | GTMKAC | 1 cut(s) | 1717 |
| Fnu4HI | GCNGC | 6 cut(s) | 164, 1137, 1155, 1308, 1506, 1509 |
| FokI | GGATG | 3 cut(s) | 810, 1496, 1859 |
| Fsp4HI | GCNGC | 6 cut(s) | 164, 1137, 1155, 1308, 1506, 1509 |
| FspBI | CTAG | 3 cut(s) | 401, 963, 1637 |
| GlaI | GCGC | 4 cut(s) | 443, 536, 556, 664 |
| GluI | GCNGC | 6 cut(s) | 164, 1137, 1155, 1308, 1506, 1509 |
| GsuI | CTGGAG | 1 cut(s) | 1179 |
| HaeII | RGCGCY | 2 cut(s) | 445, 558 |
| HaeIII | GGCC | 2 cut(s) | 1297, 1562 |
| HapII | CCGG | 4 cut(s) | 558, 666, 914, 1400 |
| HgaI | GACGC | 1 cut(s) | 480 |
| HhaI | GCGC | 4 cut(s) | 444, 537, 557, 665 |
| Hin1I | GRCGYC | 2 cut(s) | 555, 1535 |
| Hin6I | GCGC | 4 cut(s) | 442, 535, 555, 663 |
| HinP1I | GCGC | 4 cut(s) | 442, 535, 555, 663 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HindIII | AAGCTT | 2 cut(s) | 1318, 1675 |
| HinfI | GANTC | 8 cut(s) | 79, 683, 703, 830, 1089, 1651, 1738, 1807 |
| HpaII | CCGG | 4 cut(s) | 558, 666, 914, 1400 |
| HphI | GGTGA | 8 cut(s) | 4, 49, 56, 93, 692, 1505, 1530, 1711 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 309, 1718 |
| Hpy188I | TCNGA | 3 cut(s) | 176, 688, 1812 |
| Hpy188III | TCNNGA | 8 cut(s) | 571, 827, 869, 946, 1079, 1121, 1342, 1832 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 309, 1718 |
| HpyAV | CCTTC | 6 cut(s) | 122, 496, 1013, 1027, 1565, 1696 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 595, 1427 |
| HpyCH4IV | ACGT | 4 cut(s) | 465, 724, 1535, 1750 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 794, 980, 1160, 1442, 1787 |
| HpyF3I | CTNAG | 5 cut(s) | 540, 687, 828, 870, 895 |
| HpySE526I | ACGT | 4 cut(s) | 465, 724, 1535, 1750 |
| Hsp92I | GRCGYC | 2 cut(s) | 555, 1535 |
| HspAI | GCGC | 4 cut(s) | 442, 535, 555, 663 |
| KasI | GGCGCC | 1 cut(s) | 554 |
| Kzo9I | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| LmnI | GCTCC | 5 cut(s) | 205, 220, 1160, 1402, 1834 |
| Lsp1109I | GCAGC | 4 cut(s) | 175, 1141, 1148, 1319 |
| LweI | GCATC | 4 cut(s) | 235, 494, 832, 1837 |
| MaeI | CTAG | 3 cut(s) | 401, 963, 1637 |
| MaeII | ACGT | 4 cut(s) | 465, 724, 1535, 1750 |
| MaeIII | GTNAC | 4 cut(s) | 99, 296, 1493, 1536 |
| MalI | GATC | 6 cut(s) | 93, 173, 648, 715, 918, 1179 |
| MboI | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| MboII | GAAGA | 5 cut(s) | 129, 290, 529, 706, 1094 |
| MfeI | CAATTG | 3 cut(s) | 392, 656, 1529 |
| MflI | RGATCY | 2 cut(s) | 91, 916 |
| Mly113I | GGCGCC | 1 cut(s) | 555 |
| MlyI | GAGTC | 3 cut(s) | 839, 1645, 1816 |
| Mph1103I | ATGCAT | 1 cut(s) | 1389 |
| MslI | CAYNNNNRTG | 5 cut(s) | 17, 380, 747, 1077, 1083 |
| MspA1I | CMGCKG | 1 cut(s) | 97 |
| MspI | CCGG | 4 cut(s) | 558, 666, 914, 1400 |
| MspR9I | CCNGG | 1 cut(s) | 559 |
| MunI | CAATTG | 3 cut(s) | 392, 656, 1529 |
| Mva1269I | GAATGC | 1 cut(s) | 955 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 794, 980, 1160, 1442, 1787 |
| NarI | GGCGCC | 1 cut(s) | 555 |
| NciI | CCSGG | 1 cut(s) | 559 |
| NdeI | CATATG | 1 cut(s) | 313 |
| NdeII | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| NlaIV | GGNNCC | 3 cut(s) | 556, 597, 918 |
| NmuCI | GTSAC | 3 cut(s) | 99, 1493, 1536 |
| NsiI | ATGCAT | 1 cut(s) | 1389 |
| NspI | RCATGY | 4 cut(s) | 983, 996, 1154, 1646 |
| OliI | CACNNNNGTG | 2 cut(s) | 17, 747 |
| PaeI | GCATGC | 2 cut(s) | 983, 1646 |
| PagI | TCATGA | 1 cut(s) | 1078 |
| PceI | AGGCCT | 1 cut(s) | 1297 |
| PciI | ACATGT | 1 cut(s) | 992 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 79 |
| PctI | GAATGC | 1 cut(s) | 955 |
| PfeI | GAWTC | 5 cut(s) | 79, 683, 703, 1089, 1738 |
| PkrI | GCNGC | 6 cut(s) | 165, 1138, 1156, 1309, 1507, 1510 |
| PleI | GAGTC | 3 cut(s) | 838, 1645, 1815 |
| PluTI | GGCGCC | 1 cut(s) | 558 |
| PmaCI | CACGTG | 1 cut(s) | 466 |
| PmlI | CACGTG | 1 cut(s) | 466 |
| PpsI | GAGTC | 3 cut(s) | 838, 1645, 1815 |
| Ppu21I | YACGTR | 1 cut(s) | 466 |
| PscI | ACATGT | 1 cut(s) | 992 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp1406I | AACGTT | 1 cut(s) | 724 |
| PspCI | CACGTG | 1 cut(s) | 466 |
| PspN4I | GGNNCC | 3 cut(s) | 556, 597, 918 |
| PspPI | GGNCC | 1 cut(s) | 1561 |
| PsuI | RGATCY | 2 cut(s) | 91, 916 |
| RsaI | GTAC | 4 cut(s) | 159, 265, 308, 1776 |
| RsaNI | GTAC | 4 cut(s) | 158, 264, 307, 1775 |
| RseI | CAYNNNNRTG | 5 cut(s) | 17, 380, 747, 1077, 1083 |
| SatI | GCNGC | 6 cut(s) | 164, 1137, 1155, 1308, 1506, 1509 |
| Sau3AI | GATC | 6 cut(s) | 91, 171, 646, 713, 916, 1177 |
| Sau96I | GGNCC | 1 cut(s) | 1561 |
| SchI | GAGTC | 3 cut(s) | 839, 1645, 1816 |
| ScrFI | CCNGG | 1 cut(s) | 559 |
| SfaNI | GCATC | 4 cut(s) | 235, 494, 832, 1837 |
| SfoI | GGCGCC | 1 cut(s) | 556 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 17, 380, 747, 1077, 1083 |
| SmlI | CTYRAG | 1 cut(s) | 1119 |
| SmoI | CTYRAG | 1 cut(s) | 1119 |
| SpeI | ACTAGT | 1 cut(s) | 1636 |
| SphI | GCATGC | 2 cut(s) | 983, 1646 |
| SseBI | AGGCCT | 1 cut(s) | 1297 |
| SsiI | CCGC | 6 cut(s) | 95, 811, 1505, 1508, 1511, 1550 |
| SspDI | GGCGCC | 1 cut(s) | 554 |
| SspMI | CTAG | 3 cut(s) | 401, 963, 1637 |
| StuI | AGGCCT | 1 cut(s) | 1297 |
| StyD4I | CCNGG | 1 cut(s) | 557 |
| StyI | CCWWGG | 1 cut(s) | 962 |
| TaaI | ACNGT | 3 cut(s) | 19, 595, 1427 |
| TaiI | ACGT | 4 cut(s) | 468, 727, 1538, 1753 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TatI | WGTACW | 3 cut(s) | 157, 306, 1774 |
| TauI | GCSGC | 2 cut(s) | 1508, 1511 |
| TfiI | GAWTC | 5 cut(s) | 79, 683, 703, 1089, 1738 |
| TscAI | CASTG | 4 cut(s) | 24, 588, 779, 1432 |
| TseFI | GTSAC | 3 cut(s) | 99, 1493, 1536 |
| TseI | GCWGC | 4 cut(s) | 163, 1136, 1154, 1307 |
| Tsp45I | GTSAC | 3 cut(s) | 99, 1493, 1536 |
| TspDTI | ATGAA | 9 cut(s) | 103, 330, 626, 695, 1067, 1067, 1095, 1592, 1730 |
| TspGWI | ACGGA | 2 cut(s) | 287, 1101 |
| TspRI | CASTG | 4 cut(s) | 24, 588, 779, 1432 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XapI | RAATTY | 3 cut(s) | 409, 766, 1264 |
| XceI | RCATGY | 4 cut(s) | 983, 996, 1154, 1646 |
| XmaJI | CCTAGG | 1 cut(s) | 962 |
| XmiI | GTMKAC | 1 cut(s) | 1717 |
| XspI | CTAG | 3 cut(s) | 401, 963, 1637 |
| ZraI | GACGTC | 1 cut(s) | 1536 |
| Zsp2I | ATGCAT | 1 cut(s) | 1389 |