Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1031 |
| AccI | GTMKAC | 1 cut(s) | 993 |
| AccIII | TCCGGA | 1 cut(s) | 1105 |
| AciI | CCGC | 4 cut(s) | 283, 755, 952, 1031 |
| AcsI | RAATTY | 2 cut(s) | 150, 1052 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AfaI | GTAC | 1 cut(s) | 17 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 72, 844, 971, 1023, 1024, 1091, 1112 |
| AgsI | TTSAA | 2 cut(s) | 734, 982 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 451, 483 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 368, 400 |
| AluBI | AGCT | 4 cut(s) | 743, 774, 1079, 1127 |
| AluI | AGCT | 4 cut(s) | 743, 774, 1079, 1127 |
| Alw21I | GWGCWC | 1 cut(s) | 1113 |
| Alw26I | GTCTC | 6 cut(s) | 245, 602, 682, 768, 774, 1107 |
| Aor13HI | TCCGGA | 1 cut(s) | 1105 |
| AoxI | GGCC | 2 cut(s) | 270, 718 |
| ApeKI | GCWGC | 2 cut(s) | 743, 752 |
| ApoI | RAATTY | 2 cut(s) | 150, 1052 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 986, 1018 |
| AseI | ATTAAT | 2 cut(s) | 318, 987 |
| AspS9I | GGNCC | 2 cut(s) | 704, 835 |
| AsuHPI | GGTGA | 2 cut(s) | 51, 877 |
| AsuNHI | GCTAGC | 2 cut(s) | 1066, 1123 |
| AvaII | GGWCC | 2 cut(s) | 704, 835 |
| Bbv12I | GWGCWC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 2 cut(s) | 730, 764 |
| BccI | CCATC | 6 cut(s) | 20, 128, 289, 371, 449, 940 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BciVI | GTATCC | 1 cut(s) | 529 |
| BcoDI | GTCTC | 6 cut(s) | 245, 602, 682, 768, 774, 1107 |
| BfaI | CTAG | 3 cut(s) | 882, 1067, 1124 |
| BfuI | GTATCC | 1 cut(s) | 529 |
| BisI | GCNGC | 3 cut(s) | 284, 744, 753 |
| BlsI | GCNGC | 3 cut(s) | 285, 745, 754 |
| BmcAI | AGTACT | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 1 cut(s) | 73 |
| Bme18I | GGWCC | 2 cut(s) | 704, 835 |
| BmgT120I | GGNCC | 2 cut(s) | 704, 835 |
| BmiI | GGNNCC | 1 cut(s) | 836 |
| BmrFI | CCNGG | 1 cut(s) | 73 |
| BmrI | ACTGGG | 1 cut(s) | 1101 |
| BmtI | GCTAGC | 2 cut(s) | 1070, 1127 |
| BmuI | ACTGGG | 1 cut(s) | 1101 |
| BpmI | CTGGAG | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| BsaWI | WCCGGW | 1 cut(s) | 1105 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 514, 544 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 72, 844, 971, 1023, 1024, 1091, 1112 |
| Bse1I | ACTGG | 1 cut(s) | 1096 |
| BseAI | TCCGGA | 1 cut(s) | 1105 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseGI | GGATG | 5 cut(s) | 139, 271, 382, 441, 951 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 72, 844, 971, 1023, 1024, 1091, 1112 |
| BseMII | CTCAG | 1 cut(s) | 671 |
| BseNI | ACTGG | 1 cut(s) | 1096 |
| BseRI | GAGGAG | 1 cut(s) | 1089 |
| BseXI | GCAGC | 2 cut(s) | 730, 764 |
| BsgI | GTGCAG | 3 cut(s) | 596, 771, 896 |
| BshFI | GGCC | 2 cut(s) | 272, 720 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1113 |
| BsiSI | CCGG | 2 cut(s) | 173, 1106 |
| BslFI | GGGAC | 2 cut(s) | 848, 863 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 72, 844, 971, 1023, 1024, 1091, 1112 |
| BsmAI | GTCTC | 6 cut(s) | 245, 602, 682, 768, 774, 1107 |
| BsmFI | GGGAC | 2 cut(s) | 848, 863 |
| BsmI | GAATGC | 1 cut(s) | 1001 |
| BsnI | GGCC | 2 cut(s) | 272, 720 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1113 |
| Bsp13I | TCCGGA | 1 cut(s) | 1105 |
| Bsp143I | GATC | 2 cut(s) | 823, 1006 |
| BspACI | CCGC | 4 cut(s) | 283, 755, 952, 1031 |
| BspANI | GGCC | 2 cut(s) | 272, 720 |
| BspCNI | CTCAG | 1 cut(s) | 670 |
| BspEI | TCCGGA | 1 cut(s) | 1105 |
| BspLI | GGNNCC | 1 cut(s) | 836 |
| BspOI | GCTAGC | 2 cut(s) | 1070, 1127 |
| BsrBI | CCGCTC | 1 cut(s) | 1031 |
| BsrI | ACTGG | 1 cut(s) | 1096 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 2 cut(s) | 823, 1006 |
| BssT1I | CCWWGG | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 1 cut(s) | 195 |
| Bst6I | CTCTTC | 1 cut(s) | 163 |
| BstC8I | GCNNGC | 3 cut(s) | 1033, 1068, 1125 |
| BstDEI | CTNAG | 1 cut(s) | 657 |
| BstF5I | GGATG | 5 cut(s) | 139, 271, 382, 441, 951 |
| BstKTI | GATC | 2 cut(s) | 826, 1009 |
| BstMAI | GTCTC | 6 cut(s) | 245, 602, 682, 768, 774, 1107 |
| BstMBI | GATC | 2 cut(s) | 823, 1006 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 749, 752, 1076 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 750 |
| BstSCI | CCNGG | 1 cut(s) | 71 |
| BstV1I | GCAGC | 2 cut(s) | 730, 764 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 208 |
| BsuI | GTATCC | 1 cut(s) | 529 |
| BsuRI | GGCC | 2 cut(s) | 272, 720 |
| BtsCI | GGATG | 5 cut(s) | 139, 271, 382, 441, 951 |
| BtsIMutI | CAGTG | 1 cut(s) | 1089 |
| Cac8I | GCNNGC | 3 cut(s) | 1033, 1068, 1125 |
| Cfr13I | GGNCC | 2 cut(s) | 704, 835 |
| CseI | GACGC | 1 cut(s) | 860 |
| Csp6I | GTAC | 1 cut(s) | 16 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 843, 878 |
| CviAII | CATG | 4 cut(s) | 53, 713, 747, 1010 |
| CviQI | GTAC | 1 cut(s) | 16 |
| DdeI | CTNAG | 1 cut(s) | 657 |
| DpnI | GATC | 2 cut(s) | 825, 1008 |
| DpnII | GATC | 2 cut(s) | 823, 1006 |
| Eam1104I | CTCTTC | 1 cut(s) | 163 |
| EarI | CTCTTC | 1 cut(s) | 163 |
| Eco130I | CCWWGG | 1 cut(s) | 372 |
| Eco47I | GGWCC | 2 cut(s) | 704, 835 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| EcoRI | GAATTC | 1 cut(s) | 1052 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 1 cut(s) | 372 |
| ErhI | CCWWGG | 1 cut(s) | 372 |
| FaeI | CATG | 4 cut(s) | 56, 716, 750, 1013 |
| FaqI | GGGAC | 2 cut(s) | 848, 863 |
| FatI | CATG | 4 cut(s) | 52, 712, 746, 1009 |
| FauI | CCCGC | 1 cut(s) | 1024 |
| FauNDI | CATATG | 1 cut(s) | 516 |
| FblI | GTMKAC | 1 cut(s) | 993 |
| Fnu4HI | GCNGC | 3 cut(s) | 284, 744, 753 |
| FokI | GGATG | 5 cut(s) | 146, 278, 389, 428, 958 |
| Fsp4HI | GCNGC | 3 cut(s) | 284, 744, 753 |
| FspBI | CTAG | 3 cut(s) | 882, 1067, 1124 |
| GluI | GCNGC | 3 cut(s) | 284, 744, 753 |
| GsuI | CTGGAG | 1 cut(s) | 94 |
| HaeIII | GGCC | 2 cut(s) | 272, 720 |
| HapII | CCGG | 2 cut(s) | 173, 1106 |
| HgaI | GACGC | 1 cut(s) | 860 |
| Hin1II | CATG | 4 cut(s) | 56, 716, 750, 1013 |
| HincII | GTYRAC | 3 cut(s) | 198, 369, 994 |
| HindII | GTYRAC | 3 cut(s) | 198, 369, 994 |
| HindIII | AAGCTT | 1 cut(s) | 772 |
| HinfI | GANTC | 7 cut(s) | 169, 331, 511, 584, 620, 868, 1042 |
| HpaII | CCGG | 2 cut(s) | 173, 1106 |
| HphI | GGTGA | 2 cut(s) | 51, 877 |
| Hpy166II | GTNNAC | 4 cut(s) | 198, 369, 624, 994 |
| Hpy188I | TCNGA | 2 cut(s) | 660, 873 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 107, 617, 882, 1106 |
| Hpy8I | GTNNAC | 4 cut(s) | 198, 369, 624, 994 |
| Hpy99I | CGWCG | 1 cut(s) | 998 |
| HpyAV | CCTTC | 9 cut(s) | 72, 133, 330, 555, 564, 710, 805, 838, 917 |
| HpyCH4III | ACNGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 6 cut(s) | 577, 670, 746, 752, 913, 962 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 749, 752, 1076 |
| HpyF3I | CTNAG | 1 cut(s) | 657 |
| Hsp92II | CATG | 4 cut(s) | 56, 716, 750, 1013 |
| Kpn2I | TCCGGA | 1 cut(s) | 1105 |
| Kzo9I | GATC | 2 cut(s) | 823, 1006 |
| LmnI | GCTCC | 3 cut(s) | 1028, 1076, 1108 |
| Lsp1109I | GCAGC | 2 cut(s) | 730, 764 |
| MaeI | CTAG | 3 cut(s) | 882, 1067, 1124 |
| MaeIII | GTNAC | 2 cut(s) | 223, 1012 |
| MalI | GATC | 2 cut(s) | 825, 1008 |
| MbiI | CCGCTC | 1 cut(s) | 1031 |
| MboI | GATC | 2 cut(s) | 823, 1006 |
| MboII | GAAGA | 6 cut(s) | 150, 417, 484, 487, 785, 994 |
| MhlI | GDGCHC | 1 cut(s) | 1113 |
| MluCI | AATT | 5 cut(s) | 150, 163, 243, 421, 1052 |
| MlyI | GAGTC | 3 cut(s) | 340, 593, 629 |
| MmeI | TCCRAC | 2 cut(s) | 540, 791 |
| MroI | TCCGGA | 1 cut(s) | 1105 |
| MseI | TTAA | 5 cut(s) | 242, 318, 435, 555, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 755 |
| MspI | CCGG | 2 cut(s) | 173, 1106 |
| MspR9I | CCNGG | 1 cut(s) | 73 |
| Mva1269I | GAATGC | 1 cut(s) | 1001 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 749, 752, 1076 |
| NdeI | CATATG | 1 cut(s) | 516 |
| NdeII | GATC | 2 cut(s) | 823, 1006 |
| NheI | GCTAGC | 2 cut(s) | 1066, 1123 |
| NlaIII | CATG | 4 cut(s) | 56, 716, 750, 1013 |
| NlaIV | GGNNCC | 1 cut(s) | 836 |
| NmeAIII | GCCGAG | 1 cut(s) | 746 |
| NmuCI | GTSAC | 1 cut(s) | 1012 |
| NspI | RCATGY | 1 cut(s) | 750 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1002 |
| PctI | GAATGC | 1 cut(s) | 1001 |
| PfeI | GAWTC | 4 cut(s) | 169, 511, 868, 1042 |
| PflFI | GACNNNGTC | 1 cut(s) | 877 |
| PfoI | TCCNGGA | 1 cut(s) | 71 |
| PkrI | GCNGC | 3 cut(s) | 285, 745, 754 |
| PleI | GAGTC | 3 cut(s) | 339, 592, 628 |
| PpsI | GAGTC | 3 cut(s) | 339, 592, 628 |
| PshBI | ATTAAT | 2 cut(s) | 318, 987 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 1 cut(s) | 836 |
| PspPI | GGNCC | 2 cut(s) | 704, 835 |
| PsyI | GACNNNGTC | 1 cut(s) | 877 |
| RsaI | GTAC | 1 cut(s) | 17 |
| RsaNI | GTAC | 1 cut(s) | 16 |
| SalI | GTCGAC | 1 cut(s) | 992 |
| SaqAI | TTAA | 5 cut(s) | 242, 318, 435, 555, 987 |
| SatI | GCNGC | 3 cut(s) | 284, 744, 753 |
| Sau3AI | GATC | 2 cut(s) | 823, 1006 |
| Sau96I | GGNCC | 2 cut(s) | 704, 835 |
| ScaI | AGTACT | 1 cut(s) | 17 |
| SchI | GAGTC | 3 cut(s) | 340, 593, 629 |
| ScrFI | CCNGG | 1 cut(s) | 73 |
| SduI | GDGCHC | 1 cut(s) | 1113 |
| SinI | GGWCC | 2 cut(s) | 704, 835 |
| Sse9I | AATT | 5 cut(s) | 150, 163, 243, 421, 1052 |
| SsiI | CCGC | 4 cut(s) | 283, 755, 952, 1031 |
| SspI | AATATT | 1 cut(s) | 322 |
| SspMI | CTAG | 3 cut(s) | 882, 1067, 1124 |
| StyD4I | CCNGG | 1 cut(s) | 71 |
| StyI | CCWWGG | 1 cut(s) | 372 |
| TaaI | ACNGT | 1 cut(s) | 195 |
| TaqI | TCGA | 5 cut(s) | 293, 334, 398, 993, 1005 |
| TasI | AATT | 5 cut(s) | 150, 163, 243, 421, 1052 |
| TatI | WGTACW | 1 cut(s) | 15 |
| TauI | GCSGC | 1 cut(s) | 286 |
| TfiI | GAWTC | 4 cut(s) | 169, 511, 868, 1042 |
| Tru1I | TTAA | 5 cut(s) | 242, 318, 435, 555, 987 |
| Tru9I | TTAA | 5 cut(s) | 242, 318, 435, 555, 987 |
| TscAI | CASTG | 1 cut(s) | 1096 |
| TseFI | GTSAC | 1 cut(s) | 1012 |
| TseI | GCWGC | 2 cut(s) | 743, 752 |
| Tsp45I | GTSAC | 1 cut(s) | 1012 |
| TspDTI | ATGAA | 4 cut(s) | 503, 729, 893, 1065 |
| TspRI | CASTG | 1 cut(s) | 1096 |
| Tth111I | GACNNNGTC | 1 cut(s) | 877 |
| VpaK11BI | GGWCC | 2 cut(s) | 704, 835 |
| VspI | ATTAAT | 2 cut(s) | 318, 987 |
| XapI | RAATTY | 2 cut(s) | 150, 1052 |
| XbaI | TCTAGA | 1 cut(s) | 881 |
| XceI | RCATGY | 1 cut(s) | 750 |
| XmiI | GTMKAC | 1 cut(s) | 993 |
| XspI | CTAG | 3 cut(s) | 882, 1067, 1124 |
| ZrmI | AGTACT | 1 cut(s) | 17 |