Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 935 |
| Acc65I | GGTACC | 2 cut(s) | 86, 806 |
| AccB1I | GGYRCC | 5 cut(s) | 86, 143, 769, 806, 833 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 156 |
| AciI | CCGC | 1 cut(s) | 878 |
| AclWI | GGATC | 2 cut(s) | 350, 363 |
| AcoI | YGGCCR | 1 cut(s) | 474 |
| AcyI | GRCGYC | 1 cut(s) | 846 |
| AfaI | GTAC | 7 cut(s) | 31, 88, 171, 469, 685, 808, 918 |
| AfeI | AGCGCT | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 439, 779 |
| AflII | CTTAAG | 1 cut(s) | 788 |
| AflIII | ACRYGT | 1 cut(s) | 451 |
| AgsI | TTSAA | 5 cut(s) | 342, 541, 796, 926, 992 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 744 |
| AjiI | CACGTC | 1 cut(s) | 156 |
| AjnI | CCWGG | 3 cut(s) | 149, 254, 778 |
| AluBI | AGCT | 6 cut(s) | 8, 595, 650, 671, 705, 965 |
| AluI | AGCT | 6 cut(s) | 8, 595, 650, 671, 705, 965 |
| Alw26I | GTCTC | 1 cut(s) | 660 |
| AlwI | GGATC | 2 cut(s) | 350, 363 |
| Aor51HI | AGCGCT | 1 cut(s) | 295 |
| AoxI | GGCC | 1 cut(s) | 474 |
| ApeKI | GCWGC | 2 cut(s) | 494, 911 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 441, 473 |
| AseI | ATTAAT | 1 cut(s) | 45 |
| Asp718I | GGTACC | 2 cut(s) | 86, 806 |
| AspLEI | GCGC | 2 cut(s) | 296, 464 |
| AsuHPI | GGTGA | 2 cut(s) | 422, 516 |
| AxyI | CCTNAGG | 1 cut(s) | 851 |
| BaeGI | GKGCMC | 1 cut(s) | 754 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 78, 111 |
| BalI | TGGCCA | 1 cut(s) | 476 |
| BamHI | GGATCC | 1 cut(s) | 355 |
| BanI | GGYRCC | 5 cut(s) | 86, 143, 769, 806, 833 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 689, 721 |
| BbsI | GAAGAC | 2 cut(s) | 567, 743 |
| BbvI | GCAGC | 2 cut(s) | 481, 923 |
| BccI | CCATC | 4 cut(s) | 77, 134, 797, 964 |
| BceAI | ACGGC | 1 cut(s) | 821 |
| BciT130I | CCWGG | 3 cut(s) | 151, 256, 780 |
| BciVI | GTATCC | 2 cut(s) | 60, 732 |
| BclI | TGATCA | 1 cut(s) | 859 |
| BcoDI | GTCTC | 1 cut(s) | 660 |
| BfaI | CTAG | 1 cut(s) | 92 |
| BfoI | RGCGCY | 1 cut(s) | 297 |
| BfrI | CTTAAG | 1 cut(s) | 788 |
| BfuAI | ACCTGC | 1 cut(s) | 935 |
| BfuI | GTATCC | 2 cut(s) | 60, 732 |
| BisI | GCNGC | 3 cut(s) | 495, 879, 912 |
| BlsI | GCNGC | 3 cut(s) | 496, 880, 913 |
| Bme1390I | CCNGG | 3 cut(s) | 151, 256, 780 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 744 |
| BmgBI | CACGTC | 1 cut(s) | 156 |
| BmiI | GGNNCC | 6 cut(s) | 88, 145, 357, 771, 808, 835 |
| BmrFI | CCNGG | 3 cut(s) | 151, 256, 780 |
| BmsI | GCATC | 2 cut(s) | 876, 898 |
| BpiI | GAAGAC | 2 cut(s) | 567, 743 |
| BpmI | CTGGAG | 2 cut(s) | 30, 133 |
| Bpu10I | CCTNAGC | 1 cut(s) | 393 |
| BsaHI | GRCGYC | 1 cut(s) | 846 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 439, 779 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse1I | ACTGG | 1 cut(s) | 757 |
| Bse21I | CCTNAGG | 1 cut(s) | 851 |
| Bse3DI | GCAATG | 1 cut(s) | 238 |
| BseBI | CCWGG | 3 cut(s) | 151, 256, 780 |
| BseGI | GGATG | 1 cut(s) | 555 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 439, 779 |
| BseMI | GCAATG | 1 cut(s) | 238 |
| BseMII | CTCAG | 1 cut(s) | 436 |
| BseNI | ACTGG | 1 cut(s) | 757 |
| BseSI | GKGCMC | 1 cut(s) | 754 |
| BseXI | GCAGC | 2 cut(s) | 481, 923 |
| BsgI | GTGCAG | 2 cut(s) | 147, 684 |
| Bsh1285I | CGRYCG | 1 cut(s) | 101 |
| BshFI | GGCC | 1 cut(s) | 476 |
| BshNI | GGYRCC | 5 cut(s) | 86, 143, 769, 806, 833 |
| BsiEI | CGRYCG | 1 cut(s) | 101 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 439, 779 |
| BsmAI | GTCTC | 1 cut(s) | 660 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 754 |
| Bsp143I | GATC | 2 cut(s) | 355, 859 |
| BspACI | CCGC | 1 cut(s) | 878 |
| BspANI | GGCC | 1 cut(s) | 476 |
| BspCNI | CTCAG | 1 cut(s) | 435 |
| BspLI | GGNNCC | 6 cut(s) | 88, 145, 357, 771, 808, 835 |
| BspMI | ACCTGC | 1 cut(s) | 935 |
| BspPI | GGATC | 2 cut(s) | 350, 363 |
| BspQI | GCTCTTC | 1 cut(s) | 284 |
| BspT107I | GGYRCC | 5 cut(s) | 86, 143, 769, 806, 833 |
| BspTI | CTTAAG | 1 cut(s) | 788 |
| BsrDI | GCAATG | 1 cut(s) | 238 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 757 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssMI | GATC | 2 cut(s) | 355, 859 |
| BssNI | GRCGYC | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 3 cut(s) | 151, 256, 780 |
| Bst4CI | ACNGT | 2 cut(s) | 472, 607 |
| Bst6I | CTCTTC | 1 cut(s) | 284 |
| BstACI | GRCGYC | 1 cut(s) | 846 |
| BstAFI | CTTAAG | 1 cut(s) | 788 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 5 cut(s) | 2, 393, 422, 651, 851 |
| BstF5I | GGATG | 1 cut(s) | 555 |
| BstH2I | RGCGCY | 1 cut(s) | 297 |
| BstHHI | GCGC | 2 cut(s) | 296, 464 |
| BstKTI | GATC | 2 cut(s) | 358, 862 |
| BstMAI | GTCTC | 1 cut(s) | 660 |
| BstMBI | GATC | 2 cut(s) | 355, 859 |
| BstMCI | CGRYCG | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 941 |
| BstNI | CCWGG | 3 cut(s) | 151, 256, 780 |
| BstNSI | RCATGY | 2 cut(s) | 392, 455 |
| BstSCI | CCNGG | 3 cut(s) | 149, 254, 778 |
| BstSLI | GKGCMC | 1 cut(s) | 754 |
| BstV1I | GCAGC | 2 cut(s) | 481, 923 |
| BstV2I | GAAGAC | 2 cut(s) | 567, 743 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| Bsu36I | CCTNAGG | 1 cut(s) | 851 |
| BsuI | GTATCC | 2 cut(s) | 60, 732 |
| BsuRI | GGCC | 1 cut(s) | 476 |
| BtrI | CACGTC | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 2 cut(s) | 23, 828 |
| BveI | ACCTGC | 1 cut(s) | 935 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| CfoI | GCGC | 2 cut(s) | 296, 464 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| CseI | GACGC | 1 cut(s) | 835 |
| CsiI | ACCWGGT | 1 cut(s) | 778 |
| Csp6I | GTAC | 7 cut(s) | 30, 87, 170, 468, 684, 807, 917 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 330, 365 |
| CviAII | CATG | 4 cut(s) | 389, 452, 571, 902 |
| CviQI | GTAC | 7 cut(s) | 30, 87, 170, 468, 684, 807, 917 |
| DdeI | CTNAG | 5 cut(s) | 2, 393, 422, 651, 851 |
| DpnI | GATC | 2 cut(s) | 357, 861 |
| DpnII | GATC | 2 cut(s) | 355, 859 |
| DriI | GACNNNNNGTC | 1 cut(s) | 744 |
| EaeI | YGGCCR | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 1 cut(s) | 284 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 744 |
| EarI | CTCTTC | 1 cut(s) | 284 |
| Eco47III | AGCGCT | 1 cut(s) | 295 |
| Eco81I | CCTNAGG | 1 cut(s) | 851 |
| EcoRII | CCWGG | 3 cut(s) | 149, 254, 778 |
| EcoT22I | ATGCAT | 1 cut(s) | 891 |
| FaeI | CATG | 4 cut(s) | 392, 455, 574, 905 |
| FatI | CATG | 4 cut(s) | 388, 451, 570, 901 |
| FauNDI | CATATG | 1 cut(s) | 436 |
| FbaI | TGATCA | 1 cut(s) | 859 |
| Fnu4HI | GCNGC | 3 cut(s) | 495, 879, 912 |
| FokI | GGATG | 1 cut(s) | 562 |
| Fsp4HI | GCNGC | 3 cut(s) | 495, 879, 912 |
| FspBI | CTAG | 1 cut(s) | 92 |
| GlaI | GCGC | 2 cut(s) | 295, 463 |
| GluI | GCNGC | 3 cut(s) | 495, 879, 912 |
| GsuI | CTGGAG | 2 cut(s) | 30, 133 |
| HaeII | RGCGCY | 1 cut(s) | 297 |
| HaeIII | GGCC | 1 cut(s) | 476 |
| HapII | CCGG | 1 cut(s) | 101 |
| HgaI | GACGC | 1 cut(s) | 835 |
| HhaI | GCGC | 2 cut(s) | 296, 464 |
| Hin1I | GRCGYC | 1 cut(s) | 846 |
| Hin1II | CATG | 4 cut(s) | 392, 455, 574, 905 |
| Hin6I | GCGC | 2 cut(s) | 294, 462 |
| HinP1I | GCGC | 2 cut(s) | 294, 462 |
| HindIII | AAGCTT | 2 cut(s) | 593, 703 |
| HinfI | GANTC | 3 cut(s) | 226, 625, 827 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 2 cut(s) | 422, 516 |
| Hpy166II | GTNNAC | 3 cut(s) | 202, 826, 919 |
| Hpy188I | TCNGA | 1 cut(s) | 580 |
| Hpy188III | TCNNGA | 1 cut(s) | 763 |
| Hpy8I | GTNNAC | 3 cut(s) | 202, 826, 919 |
| HpyAV | CCTTC | 4 cut(s) | 16, 49, 370, 760 |
| HpyCH4III | ACNGT | 2 cut(s) | 472, 607 |
| HpyCH4IV | ACGT | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 5 cut(s) | 164, 216, 590, 665, 889 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 941 |
| HpyF3I | CTNAG | 5 cut(s) | 2, 393, 422, 651, 851 |
| HpySE526I | ACGT | 1 cut(s) | 155 |
| Hsp92I | GRCGYC | 1 cut(s) | 846 |
| Hsp92II | CATG | 4 cut(s) | 392, 455, 574, 905 |
| HspAI | GCGC | 2 cut(s) | 294, 462 |
| KpnI | GGTACC | 2 cut(s) | 90, 810 |
| Ksp22I | TGATCA | 1 cut(s) | 859 |
| Kzo9I | GATC | 2 cut(s) | 355, 859 |
| LguI | GCTCTTC | 1 cut(s) | 284 |
| LmnI | GCTCC | 2 cut(s) | 193, 502 |
| Lsp1109I | GCAGC | 2 cut(s) | 481, 923 |
| LweI | GCATC | 2 cut(s) | 876, 898 |
| MabI | ACCWGGT | 1 cut(s) | 778 |
| MaeI | CTAG | 1 cut(s) | 92 |
| MaeII | ACGT | 1 cut(s) | 155 |
| MaeIII | GTNAC | 2 cut(s) | 522, 904 |
| MalI | GATC | 2 cut(s) | 357, 861 |
| MboI | GATC | 2 cut(s) | 355, 859 |
| MboII | GAAGA | 4 cut(s) | 301, 567, 634, 748 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MhlI | GDGCHC | 1 cut(s) | 754 |
| MlsI | TGGCCA | 1 cut(s) | 476 |
| MluCI | AATT | 8 cut(s) | 61, 114, 131, 207, 260, 328, 638, 926 |
| MluNI | TGGCCA | 1 cut(s) | 476 |
| MlyI | GAGTC | 2 cut(s) | 235, 821 |
| MnlI | CCTC | 5 cut(s) | 157, 433, 538, 726, 836 |
| Mox20I | TGGCCA | 1 cut(s) | 476 |
| Mph1103I | ATGCAT | 1 cut(s) | 891 |
| MscI | TGGCCA | 1 cut(s) | 476 |
| MseI | TTAA | 4 cut(s) | 45, 504, 714, 789 |
| MslI | CAYNNNNRTG | 1 cut(s) | 435 |
| Msp20I | TGGCCA | 1 cut(s) | 476 |
| MspCI | CTTAAG | 1 cut(s) | 788 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 3 cut(s) | 151, 256, 780 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| MvaI | CCWGG | 3 cut(s) | 151, 256, 780 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 941 |
| NdeI | CATATG | 1 cut(s) | 436 |
| NdeII | GATC | 2 cut(s) | 355, 859 |
| NlaIII | CATG | 4 cut(s) | 392, 455, 574, 905 |
| NlaIV | GGNNCC | 6 cut(s) | 88, 145, 357, 771, 808, 835 |
| NmuCI | GTSAC | 1 cut(s) | 522 |
| NsiI | ATGCAT | 1 cut(s) | 891 |
| NspI | RCATGY | 2 cut(s) | 392, 455 |
| PaeI | GCATGC | 1 cut(s) | 392 |
| PciI | ACATGT | 1 cut(s) | 451 |
| PciSI | GCTCTTC | 1 cut(s) | 284 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PfeI | GAWTC | 1 cut(s) | 625 |
| PflFI | GACNNNGTC | 1 cut(s) | 157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 156 |
| PfoI | TCCNGGA | 1 cut(s) | 149 |
| PkrI | GCNGC | 3 cut(s) | 496, 880, 913 |
| PleI | GAGTC | 2 cut(s) | 234, 821 |
| PpsI | GAGTC | 2 cut(s) | 234, 821 |
| PscI | ACATGT | 1 cut(s) | 451 |
| PshBI | ATTAAT | 1 cut(s) | 45 |
| Psp6I | CCWGG | 3 cut(s) | 149, 254, 778 |
| PspGI | CCWGG | 3 cut(s) | 149, 254, 778 |
| PspN4I | GGNNCC | 6 cut(s) | 88, 145, 357, 771, 808, 835 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| PsyI | GACNNNGTC | 1 cut(s) | 157 |
| RsaI | GTAC | 7 cut(s) | 31, 88, 171, 469, 685, 808, 918 |
| RsaNI | GTAC | 7 cut(s) | 30, 87, 170, 468, 684, 807, 917 |
| RseI | CAYNNNNRTG | 1 cut(s) | 435 |
| SapI | GCTCTTC | 1 cut(s) | 284 |
| SaqAI | TTAA | 4 cut(s) | 45, 504, 714, 789 |
| SatI | GCNGC | 3 cut(s) | 495, 879, 912 |
| Sau3AI | GATC | 2 cut(s) | 355, 859 |
| SchI | GAGTC | 2 cut(s) | 235, 821 |
| ScrFI | CCNGG | 3 cut(s) | 151, 256, 780 |
| SduI | GDGCHC | 1 cut(s) | 754 |
| SexAI | ACCWGGT | 1 cut(s) | 778 |
| SfaNI | GCATC | 2 cut(s) | 876, 898 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 435 |
| SmlI | CTYRAG | 1 cut(s) | 788 |
| SmoI | CTYRAG | 1 cut(s) | 788 |
| SphI | GCATGC | 1 cut(s) | 392 |
| Sse9I | AATT | 8 cut(s) | 61, 114, 131, 207, 260, 328, 638, 926 |
| SsiI | CCGC | 1 cut(s) | 878 |
| SspMI | CTAG | 1 cut(s) | 92 |
| StyD4I | CCNGG | 3 cut(s) | 149, 254, 778 |
| TaaI | ACNGT | 2 cut(s) | 472, 607 |
| TaiI | ACGT | 1 cut(s) | 158 |
| TaqI | TCGA | 2 cut(s) | 97, 628 |
| TasI | AATT | 8 cut(s) | 61, 114, 131, 207, 260, 328, 638, 926 |
| TatI | WGTACW | 2 cut(s) | 467, 916 |
| TauI | GCSGC | 1 cut(s) | 881 |
| TfiI | GAWTC | 1 cut(s) | 625 |
| Tru1I | TTAA | 4 cut(s) | 45, 504, 714, 789 |
| Tru9I | TTAA | 4 cut(s) | 45, 504, 714, 789 |
| TscAI | CASTG | 2 cut(s) | 23, 828 |
| TseFI | GTSAC | 1 cut(s) | 522 |
| TseI | GCWGC | 2 cut(s) | 494, 911 |
| Tsp45I | GTSAC | 1 cut(s) | 522 |
| TspDTI | ATGAA | 2 cut(s) | 164, 714 |
| TspRI | CASTG | 2 cut(s) | 23, 828 |
| Tth111I | GACNNNGTC | 1 cut(s) | 157 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 156 |
| Vha464I | CTTAAG | 1 cut(s) | 788 |
| VspI | ATTAAT | 1 cut(s) | 45 |
| XceI | RCATGY | 2 cut(s) | 392, 455 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 484 |
| XspI | CTAG | 1 cut(s) | 92 |
| Zsp2I | ATGCAT | 1 cut(s) | 891 |