Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 22 - 144 | 1.2e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 81 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AcsI | RAATTY | 1 cut(s) | 64 |
| AfaI | GTAC | 2 cut(s) | 136, 513 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 13, 47 |
| AflII | CTTAAG | 1 cut(s) | 26 |
| AgsI | TTSAA | 2 cut(s) | 176, 260 |
| AluBI | AGCT | 2 cut(s) | 289, 410 |
| AluI | AGCT | 2 cut(s) | 289, 410 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw26I | GTCTC | 1 cut(s) | 322 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 13 |
| AoxI | GGCC | 1 cut(s) | 201 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 2 cut(s) | 101, 410 |
| ApoI | RAATTY | 1 cut(s) | 64 |
| BaeGI | GKGCMC | 1 cut(s) | 387 |
| BanII | GRGCYC | 1 cut(s) | 92 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 2 cut(s) | 88, 397 |
| BccI | CCATC | 1 cut(s) | 65 |
| BclI | TGATCA | 1 cut(s) | 445 |
| BcoDI | GTCTC | 1 cut(s) | 322 |
| BfaI | CTAG | 2 cut(s) | 129, 390 |
| BfrI | CTTAAG | 1 cut(s) | 26 |
| BisI | GCNGC | 2 cut(s) | 102, 411 |
| BlsI | GCNGC | 2 cut(s) | 103, 412 |
| BmsI | GCATC | 1 cut(s) | 115 |
| Bpu10I | CCTNAGC | 1 cut(s) | 91 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 13, 47 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 13, 47 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseSI | GKGCMC | 1 cut(s) | 387 |
| BseXI | GCAGC | 2 cut(s) | 88, 397 |
| BsgI | GTGCAG | 1 cut(s) | 396 |
| BshFI | GGCC | 1 cut(s) | 203 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 13, 47 |
| BsmAI | GTCTC | 1 cut(s) | 322 |
| BsnI | GGCC | 1 cut(s) | 203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 92, 387 |
| Bsp143I | GATC | 1 cut(s) | 445 |
| BspANI | GGCC | 1 cut(s) | 203 |
| BspCNI | CTCAG | 1 cut(s) | 104 |
| BspQI | GCTCTTC | 1 cut(s) | 246 |
| BspTI | CTTAAG | 1 cut(s) | 26 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 1 cut(s) | 445 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst6I | CTCTTC | 2 cut(s) | 246, 388 |
| BstAFI | CTTAAG | 1 cut(s) | 26 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 431 |
| BstC8I | GCNNGC | 1 cut(s) | 387 |
| BstDEI | CTNAG | 1 cut(s) | 91 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 45 |
| BstKTI | GATC | 1 cut(s) | 448 |
| BstMAI | GTCTC | 1 cut(s) | 322 |
| BstMBI | GATC | 1 cut(s) | 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 407, 431 |
| BstNSI | RCATGY | 1 cut(s) | 191 |
| BstSLI | GKGCMC | 1 cut(s) | 387 |
| BstV1I | GCAGC | 2 cut(s) | 88, 397 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 51 |
| BsuRI | GGCC | 1 cut(s) | 203 |
| BtsI | GCAGTG | 2 cut(s) | 156, 222 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 222 |
| Cac8I | GCNNGC | 1 cut(s) | 387 |
| CaiI | CAGNNNCTG | 1 cut(s) | 13 |
| Csp6I | GTAC | 2 cut(s) | 135, 512 |
| CviAII | CATG | 1 cut(s) | 188 |
| CviQI | GTAC | 2 cut(s) | 135, 512 |
| DdeI | CTNAG | 1 cut(s) | 91 |
| DpnI | GATC | 1 cut(s) | 447 |
| DpnII | GATC | 1 cut(s) | 445 |
| Eam1104I | CTCTTC | 2 cut(s) | 246, 388 |
| EarI | CTCTTC | 2 cut(s) | 246, 388 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco24I | GRGCYC | 1 cut(s) | 92 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 92 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| FaeI | CATG | 1 cut(s) | 191 |
| FaiI | YATR | 9 cut(s) | 81, 189, 225, 336, 344, 419, 432, 486, 506 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 399, 431 |
| FatI | CATG | 1 cut(s) | 187 |
| FbaI | TGATCA | 1 cut(s) | 445 |
| Fnu4HI | GCNGC | 2 cut(s) | 102, 411 |
| FriOI | GRGCYC | 1 cut(s) | 92 |
| Fsp4HI | GCNGC | 2 cut(s) | 102, 411 |
| FspBI | CTAG | 2 cut(s) | 129, 390 |
| GluI | GCNGC | 2 cut(s) | 102, 411 |
| HaeIII | GGCC | 1 cut(s) | 203 |
| Hin1II | CATG | 1 cut(s) | 191 |
| HincII | GTYRAC | 1 cut(s) | 231 |
| HindII | GTYRAC | 1 cut(s) | 231 |
| HinfI | GANTC | 1 cut(s) | 10 |
| Hpy166II | GTNNAC | 2 cut(s) | 231, 385 |
| Hpy188I | TCNGA | 2 cut(s) | 297, 466 |
| Hpy188III | TCNNGA | 1 cut(s) | 122 |
| Hpy8I | GTNNAC | 2 cut(s) | 231, 385 |
| HpyCH4V | TGCA | 4 cut(s) | 104, 191, 385, 413 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 407, 431 |
| HpyF3I | CTNAG | 1 cut(s) | 91 |
| Hsp92II | CATG | 1 cut(s) | 191 |
| Ksp22I | TGATCA | 1 cut(s) | 445 |
| Kzo9I | GATC | 1 cut(s) | 445 |
| LguI | GCTCTTC | 1 cut(s) | 246 |
| LpnPI | CCDG | 5 cut(s) | 20, 71, 78, 217, 233 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 397 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 2 cut(s) | 129, 390 |
| MalI | GATC | 1 cut(s) | 447 |
| MboI | GATC | 1 cut(s) | 445 |
| MboII | GAAGA | 3 cut(s) | 233, 350, 405 |
| MhlI | GDGCHC | 2 cut(s) | 92, 387 |
| MluCI | AATT | 2 cut(s) | 64, 370 |
| MnlI | CCTC | 4 cut(s) | 51, 125, 325, 490 |
| MseI | TTAA | 2 cut(s) | 27, 278 |
| MspCI | CTTAAG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 407, 431 |
| NdeII | GATC | 1 cut(s) | 445 |
| NlaIII | CATG | 1 cut(s) | 191 |
| NspI | RCATGY | 1 cut(s) | 191 |
| PciSI | GCTCTTC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 2 cut(s) | 103, 412 |
| PsiI | TTATAA | 1 cut(s) | 81 |
| PstNI | CAGNNNCTG | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 136, 513 |
| RsaNI | GTAC | 2 cut(s) | 135, 512 |
| SapI | GCTCTTC | 1 cut(s) | 246 |
| SaqAI | TTAA | 2 cut(s) | 27, 278 |
| SatI | GCNGC | 2 cut(s) | 102, 411 |
| Sau3AI | GATC | 1 cut(s) | 445 |
| SduI | GDGCHC | 2 cut(s) | 92, 387 |
| SetI | ASST | 8 cut(s) | 52, 63, 97, 136, 291, 317, 381, 412 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SmlI | CTYRAG | 1 cut(s) | 26 |
| SmoI | CTYRAG | 1 cut(s) | 26 |
| Sse9I | AATT | 2 cut(s) | 64, 370 |
| SspMI | CTAG | 2 cut(s) | 129, 390 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaqI | TCGA | 1 cut(s) | 121 |
| TasI | AATT | 2 cut(s) | 64, 370 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| Tru1I | TTAA | 2 cut(s) | 27, 278 |
| Tru9I | TTAA | 2 cut(s) | 27, 278 |
| TscAI | CASTG | 2 cut(s) | 156, 222 |
| TseI | GCWGC | 2 cut(s) | 101, 410 |
| TspDTI | ATGAA | 3 cut(s) | 233, 351, 426 |
| TspRI | CASTG | 2 cut(s) | 156, 222 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| Vha464I | CTTAAG | 1 cut(s) | 26 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 45 |
| XapI | RAATTY | 1 cut(s) | 64 |
| XceI | RCATGY | 1 cut(s) | 191 |
| XspI | CTAG | 2 cut(s) | 129, 390 |