Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 145, 229 |
| AccBSI | CCGCTC | 1 cut(s) | 235 |
| AciI | CCGC | 3 cut(s) | 235, 395, 440 |
| AcoI | YGGCCR | 1 cut(s) | 186 |
| AcvI | CACGTG | 1 cut(s) | 338 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 195, 368 |
| AluBI | AGCT | 2 cut(s) | 326, 343 |
| AluI | AGCT | 2 cut(s) | 326, 343 |
| Alw21I | GWGCWC | 1 cut(s) | 328 |
| Alw26I | GTCTC | 1 cut(s) | 253 |
| AoxI | GGCC | 5 cut(s) | 143, 186, 300, 417, 444 |
| ApeKI | GCWGC | 3 cut(s) | 91, 110, 479 |
| AspS9I | GGNCC | 5 cut(s) | 143, 300, 389, 417, 445 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 2 cut(s) | 130, 461 |
| AvaII | GGWCC | 1 cut(s) | 389 |
| BalI | TGGCCA | 1 cut(s) | 188 |
| BanII | GRGCYC | 1 cut(s) | 328 |
| BbrPI | CACGTG | 1 cut(s) | 338 |
| Bbv12I | GWGCWC | 1 cut(s) | 328 |
| BbvI | GCAGC | 3 cut(s) | 78, 97, 466 |
| BccI | CCATC | 2 cut(s) | 109, 362 |
| BclI | TGATCA | 1 cut(s) | 309 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BcoDI | GTCTC | 1 cut(s) | 253 |
| BfaI | CTAG | 3 cut(s) | 83, 221, 344 |
| BfmI | CTRYAG | 2 cut(s) | 319, 363 |
| BfuAI | ACCTGC | 2 cut(s) | 145, 229 |
| BisI | GCNGC | 5 cut(s) | 92, 111, 236, 396, 480 |
| BlsI | GCNGC | 5 cut(s) | 93, 112, 237, 397, 481 |
| Bme1390I | CCNGG | 1 cut(s) | 168 |
| Bme18I | GGWCC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 5 cut(s) | 143, 300, 389, 417, 445 |
| BmiI | GGNNCC | 3 cut(s) | 382, 390, 399 |
| BmrFI | CCNGG | 1 cut(s) | 168 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| BsaAI | YACGTR | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 3 cut(s) | 95, 189, 384 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 195, 368 |
| Bse118I | RCCGGY | 1 cut(s) | 442 |
| Bse3DI | GCAATG | 1 cut(s) | 36 |
| BseDI | CCNNGG | 3 cut(s) | 95, 189, 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 195, 368 |
| BseMI | GCAATG | 1 cut(s) | 36 |
| BseXI | GCAGC | 3 cut(s) | 78, 97, 466 |
| BshFI | GGCC | 5 cut(s) | 145, 188, 302, 419, 446 |
| BsiHKAI | GWGCWC | 1 cut(s) | 328 |
| BsiSI | CCGG | 2 cut(s) | 168, 443 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 195, 368 |
| BsmAI | GTCTC | 1 cut(s) | 253 |
| BsnI | GGCC | 5 cut(s) | 145, 188, 302, 419, 446 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp143I | GATC | 3 cut(s) | 3, 217, 309 |
| BspACI | CCGC | 3 cut(s) | 235, 395, 440 |
| BspANI | GGCC | 5 cut(s) | 145, 188, 302, 419, 446 |
| BspLI | GGNNCC | 3 cut(s) | 382, 390, 399 |
| BspMAI | CTGCAG | 1 cut(s) | 367 |
| BspMI | ACCTGC | 2 cut(s) | 145, 229 |
| BsrBI | CCGCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 1 cut(s) | 36 |
| BsrFI | RCCGGY | 1 cut(s) | 442 |
| BssAI | RCCGGY | 1 cut(s) | 442 |
| BssECI | CCNNGG | 3 cut(s) | 95, 189, 384 |
| BssMI | GATC | 3 cut(s) | 3, 217, 309 |
| BssT1I | CCWWGG | 3 cut(s) | 95, 189, 384 |
| Bst4CI | ACNGT | 1 cut(s) | 320 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstBAI | YACGTR | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 444 |
| BstKTI | GATC | 3 cut(s) | 6, 220, 312 |
| BstMAI | GTCTC | 1 cut(s) | 253 |
| BstMBI | GATC | 3 cut(s) | 3, 217, 309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 151, 401, 439 |
| BstSCI | CCNGG | 1 cut(s) | 166 |
| BstSFI | CTRYAG | 2 cut(s) | 319, 363 |
| BstV1I | GCAGC | 3 cut(s) | 78, 97, 466 |
| BsuRI | GGCC | 5 cut(s) | 145, 188, 302, 419, 446 |
| BtgZI | GCGATG | 1 cut(s) | 128 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| BveI | ACCTGC | 2 cut(s) | 145, 229 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 444 |
| Cfr10I | RCCGGY | 1 cut(s) | 442 |
| Cfr13I | GGNCC | 5 cut(s) | 143, 300, 389, 417, 445 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 245 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DpnI | GATC | 3 cut(s) | 5, 219, 311 |
| DpnII | GATC | 3 cut(s) | 3, 217, 309 |
| EaeI | YGGCCR | 1 cut(s) | 186 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Ecl136II | GAGCTC | 1 cut(s) | 326 |
| Eco130I | CCWWGG | 3 cut(s) | 95, 189, 384 |
| Eco24I | GRGCYC | 1 cut(s) | 328 |
| Eco47I | GGWCC | 1 cut(s) | 389 |
| Eco53kI | GAGCTC | 1 cut(s) | 326 |
| Eco72I | CACGTG | 1 cut(s) | 338 |
| EcoICRI | GAGCTC | 1 cut(s) | 326 |
| EcoO109I | RGGNCCY | 1 cut(s) | 143 |
| EcoT14I | CCWWGG | 3 cut(s) | 95, 189, 384 |
| EcoT38I | GRGCYC | 1 cut(s) | 328 |
| ErhI | CCWWGG | 3 cut(s) | 95, 189, 384 |
| FaeI | CATG | 1 cut(s) | 248 |
| FaiI | YATR | 6 cut(s) | 140, 246, 287, 452, 456, 484 |
| FatI | CATG | 1 cut(s) | 244 |
| FbaI | TGATCA | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 5 cut(s) | 92, 111, 236, 396, 480 |
| FriOI | GRGCYC | 1 cut(s) | 328 |
| Fsp4HI | GCNGC | 5 cut(s) | 92, 111, 236, 396, 480 |
| FspBI | CTAG | 3 cut(s) | 83, 221, 344 |
| GluI | GCNGC | 5 cut(s) | 92, 111, 236, 396, 480 |
| HaeIII | GGCC | 5 cut(s) | 145, 188, 302, 419, 446 |
| HapII | CCGG | 2 cut(s) | 168, 443 |
| Hin1II | CATG | 1 cut(s) | 248 |
| HinfI | GANTC | 2 cut(s) | 27, 171 |
| HpaII | CCGG | 2 cut(s) | 168, 443 |
| HphI | GGTGA | 2 cut(s) | 130, 461 |
| Hpy166II | GTNNAC | 1 cut(s) | 335 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 213 |
| Hpy188III | TCNNGA | 1 cut(s) | 64 |
| Hpy8I | GTNNAC | 1 cut(s) | 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 320 |
| HpyCH4IV | ACGT | 3 cut(s) | 263, 291, 337 |
| HpyCH4V | TGCA | 4 cut(s) | 154, 276, 365, 482 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 151, 401, 439 |
| HpySE526I | ACGT | 3 cut(s) | 263, 291, 337 |
| Hsp92II | CATG | 1 cut(s) | 248 |
| KroI | GCCGGC | 1 cut(s) | 442 |
| KroNI | GCCGGC | 1 cut(s) | 444 |
| Ksp22I | TGATCA | 1 cut(s) | 309 |
| Kzo9I | GATC | 3 cut(s) | 3, 217, 309 |
| LmnI | GCTCC | 3 cut(s) | 232, 380, 403 |
| LpnPI | CCDG | 9 cut(s) | 49, 140, 181, 211, 224, 375, 405, 414, 456 |
| Lsp1109I | GCAGC | 3 cut(s) | 78, 97, 466 |
| MaeI | CTAG | 3 cut(s) | 83, 221, 344 |
| MaeII | ACGT | 3 cut(s) | 263, 291, 337 |
| MalI | GATC | 3 cut(s) | 5, 219, 311 |
| MbiI | CCGCTC | 1 cut(s) | 235 |
| MboI | GATC | 3 cut(s) | 3, 217, 309 |
| MboII | GAAGA | 1 cut(s) | 359 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MlsI | TGGCCA | 1 cut(s) | 188 |
| MluCI | AATT | 3 cut(s) | 277, 408, 457 |
| MluNI | TGGCCA | 1 cut(s) | 188 |
| MmeI | TCCRAC | 1 cut(s) | 210 |
| MnlI | CCTC | 8 cut(s) | 17, 20, 219, 292, 313, 343, 458, 477 |
| Mox20I | TGGCCA | 1 cut(s) | 188 |
| MroNI | GCCGGC | 1 cut(s) | 442 |
| MscI | TGGCCA | 1 cut(s) | 188 |
| MseI | TTAA | 1 cut(s) | 159 |
| Msp20I | TGGCCA | 1 cut(s) | 188 |
| MspA1I | CMGCKG | 1 cut(s) | 395 |
| MspI | CCGG | 2 cut(s) | 168, 443 |
| MspR9I | CCNGG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 151, 401, 439 |
| NaeI | GCCGGC | 1 cut(s) | 444 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NdeII | GATC | 3 cut(s) | 3, 217, 309 |
| NgoMIV | GCCGGC | 1 cut(s) | 442 |
| NlaIII | CATG | 1 cut(s) | 248 |
| NlaIV | GGNNCC | 3 cut(s) | 382, 390, 399 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 334 |
| PdiI | GCCGGC | 1 cut(s) | 444 |
| PfeI | GAWTC | 2 cut(s) | 27, 171 |
| PflFI | GACNNNGTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 5 cut(s) | 93, 112, 237, 397, 481 |
| PmaCI | CACGTG | 1 cut(s) | 338 |
| PmlI | CACGTG | 1 cut(s) | 338 |
| Ppu21I | YACGTR | 1 cut(s) | 338 |
| Psp124BI | GAGCTC | 1 cut(s) | 328 |
| PspCI | CACGTG | 1 cut(s) | 338 |
| PspN4I | GGNNCC | 3 cut(s) | 382, 390, 399 |
| PspPI | GGNCC | 5 cut(s) | 143, 300, 389, 417, 445 |
| PstI | CTGCAG | 1 cut(s) | 367 |
| PsyI | GACNNNGTC | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| SacI | GAGCTC | 1 cut(s) | 328 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| SatI | GCNGC | 5 cut(s) | 92, 111, 236, 396, 480 |
| Sau3AI | GATC | 3 cut(s) | 3, 217, 309 |
| Sau96I | GGNCC | 5 cut(s) | 143, 300, 389, 417, 445 |
| ScrFI | CCNGG | 1 cut(s) | 168 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SfcI | CTRYAG | 2 cut(s) | 319, 363 |
| SinI | GGWCC | 1 cut(s) | 389 |
| Sse9I | AATT | 3 cut(s) | 277, 408, 457 |
| SsiI | CCGC | 3 cut(s) | 235, 395, 440 |
| SspMI | CTAG | 3 cut(s) | 83, 221, 344 |
| SstI | GAGCTC | 1 cut(s) | 328 |
| StyD4I | CCNGG | 1 cut(s) | 166 |
| StyI | CCWWGG | 3 cut(s) | 95, 189, 384 |
| TaaI | ACNGT | 1 cut(s) | 320 |
| TaiI | ACGT | 3 cut(s) | 266, 294, 340 |
| TaqI | TCGA | 1 cut(s) | 328 |
| TasI | AATT | 3 cut(s) | 277, 408, 457 |
| TatI | WGTACW | 1 cut(s) | 18 |
| TauI | GCSGC | 2 cut(s) | 238, 398 |
| TfiI | GAWTC | 2 cut(s) | 27, 171 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TscAI | CASTG | 1 cut(s) | 323 |
| TseI | GCWGC | 3 cut(s) | 91, 110, 479 |
| TspDTI | ATGAA | 2 cut(s) | 233, 302 |
| TspGWI | ACGGA | 1 cut(s) | 164 |
| TspRI | CASTG | 1 cut(s) | 323 |
| Tth111I | GACNNNGTC | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 1 cut(s) | 389 |
| XspI | CTAG | 3 cut(s) | 83, 221, 344 |