Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 64 - 182 | 1.7e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 298 |
| Acc36I | ACCTGC | 1 cut(s) | 298 |
| AcsI | RAATTY | 3 cut(s) | 65, 375, 616 |
| AcuI | CTGAAG | 1 cut(s) | 371 |
| AfaI | GTAC | 2 cut(s) | 256, 567 |
| AflIII | ACRYGT | 1 cut(s) | 367 |
| AgsI | TTSAA | 8 cut(s) | 22, 38, 288, 341, 374, 380, 413, 575 |
| AluBI | AGCT | 2 cut(s) | 394, 542 |
| AluI | AGCT | 2 cut(s) | 394, 542 |
| Alw26I | GTCTC | 2 cut(s) | 9, 237 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 404 |
| ApeKI | GCWGC | 2 cut(s) | 266, 358 |
| ApoI | RAATTY | 3 cut(s) | 65, 375, 616 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 373, 405 |
| AsuHPI | GGTGA | 1 cut(s) | 291 |
| BbvI | GCAGC | 2 cut(s) | 253, 370 |
| BccI | CCATC | 3 cut(s) | 76, 471, 596 |
| BcoDI | GTCTC | 2 cut(s) | 9, 237 |
| BfaI | CTAG | 3 cut(s) | 510, 539, 543 |
| BfuAI | ACCTGC | 1 cut(s) | 298 |
| BisI | GCNGC | 2 cut(s) | 267, 359 |
| BlsI | GCNGC | 2 cut(s) | 268, 360 |
| BmsI | GCATC | 4 cut(s) | 21, 305, 370, 425 |
| Bpu10I | CCTNAGC | 1 cut(s) | 303 |
| BpuEI | CTTGAG | 2 cut(s) | 234, 338 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 422, 452, 490, 520 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| BseGI | GGATG | 3 cut(s) | 36, 459, 588 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BseXI | GCAGC | 2 cut(s) | 253, 370 |
| BsmAI | GTCTC | 2 cut(s) | 9, 237 |
| Bsp1407I | TGTACA | 1 cut(s) | 565 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BspMI | ACCTGC | 1 cut(s) | 298 |
| BspQI | GCTCTTC | 1 cut(s) | 342 |
| BsrGI | TGTACA | 1 cut(s) | 565 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 1 cut(s) | 478 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstAUI | TGTACA | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 1 cut(s) | 396 |
| BstDEI | CTNAG | 2 cut(s) | 239, 303 |
| BstF5I | GGATG | 3 cut(s) | 36, 459, 588 |
| BstMAI | GTCTC | 2 cut(s) | 9, 237 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 272, 548 |
| BstNSI | RCATGY | 1 cut(s) | 371 |
| BstV1I | GCAGC | 2 cut(s) | 253, 370 |
| BtsCI | GGATG | 3 cut(s) | 36, 459, 588 |
| BtsI | GCAGTG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 2 cut(s) | 260, 405 |
| BveI | ACCTGC | 1 cut(s) | 298 |
| Cac8I | GCNNGC | 1 cut(s) | 396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 404 |
| CciI | TCATGA | 1 cut(s) | 181 |
| Csp6I | GTAC | 2 cut(s) | 255, 566 |
| CviAII | CATG | 4 cut(s) | 174, 182, 368, 455 |
| CviJI | RGCY | 7 cut(s) | 95, 136, 266, 323, 394, 542, 580 |
| CviKI_1 | RGCY | 7 cut(s) | 95, 136, 266, 323, 394, 542, 580 |
| CviQI | GTAC | 2 cut(s) | 255, 566 |
| DdeI | CTNAG | 2 cut(s) | 239, 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco57I | CTGAAG | 1 cut(s) | 371 |
| FaeI | CATG | 4 cut(s) | 177, 185, 371, 458 |
| FatI | CATG | 4 cut(s) | 173, 181, 367, 454 |
| Fnu4HI | GCNGC | 2 cut(s) | 267, 359 |
| FokI | GGATG | 3 cut(s) | 43, 446, 575 |
| Fsp4HI | GCNGC | 2 cut(s) | 267, 359 |
| FspBI | CTAG | 3 cut(s) | 510, 539, 543 |
| GluI | GCNGC | 2 cut(s) | 267, 359 |
| Hin1II | CATG | 4 cut(s) | 177, 185, 371, 458 |
| HinfI | GANTC | 3 cut(s) | 235, 245, 584 |
| HphI | GGTGA | 1 cut(s) | 291 |
| Hpy188I | TCNGA | 2 cut(s) | 406, 421 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 598 |
| HpyCH4III | ACNGT | 1 cut(s) | 478 |
| HpyCH4V | TGCA | 4 cut(s) | 197, 358, 454, 484 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 272, 548 |
| HpyF3I | CTNAG | 2 cut(s) | 239, 303 |
| Hsp92II | CATG | 4 cut(s) | 177, 185, 371, 458 |
| LguI | GCTCTTC | 1 cut(s) | 342 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| LpnPI | CCDG | 6 cut(s) | 21, 217, 248, 293, 380, 566 |
| Lsp1109I | GCAGC | 2 cut(s) | 253, 370 |
| LweI | GCATC | 4 cut(s) | 21, 305, 370, 425 |
| MaeI | CTAG | 3 cut(s) | 510, 539, 543 |
| MaeIII | GTNAC | 1 cut(s) | 126 |
| MboII | GAAGA | 2 cut(s) | 198, 329 |
| MluCI | AATT | 5 cut(s) | 65, 74, 202, 375, 616 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 4 cut(s) | 147, 223, 286, 313 |
| MseI | TTAA | 3 cut(s) | 53, 327, 637 |
| MslI | CAYNNNNRTG | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 1 cut(s) | 394 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 272, 548 |
| NlaIII | CATG | 4 cut(s) | 177, 185, 371, 458 |
| NmuCI | GTSAC | 1 cut(s) | 126 |
| NspI | RCATGY | 1 cut(s) | 371 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PaqCI | CACCTGC | 1 cut(s) | 298 |
| PciI | ACATGT | 1 cut(s) | 367 |
| PciSI | GCTCTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 2 cut(s) | 235, 584 |
| PkrI | GCNGC | 2 cut(s) | 268, 360 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| PscI | ACATGT | 1 cut(s) | 367 |
| PstNI | CAGNNNCTG | 1 cut(s) | 404 |
| PvuII | CAGCTG | 1 cut(s) | 394 |
| RsaI | GTAC | 2 cut(s) | 256, 567 |
| RsaNI | GTAC | 2 cut(s) | 255, 566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 366 |
| SapI | GCTCTTC | 1 cut(s) | 342 |
| SaqAI | TTAA | 3 cut(s) | 53, 327, 637 |
| SatI | GCNGC | 2 cut(s) | 267, 359 |
| SchI | GAGTC | 1 cut(s) | 239 |
| SetI | ASST | 5 cut(s) | 256, 304, 312, 396, 544 |
| SfaNI | GCATC | 4 cut(s) | 21, 305, 370, 425 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 366 |
| SmlI | CTYRAG | 2 cut(s) | 249, 317 |
| SmoI | CTYRAG | 2 cut(s) | 249, 317 |
| Sse9I | AATT | 5 cut(s) | 65, 74, 202, 375, 616 |
| SspMI | CTAG | 3 cut(s) | 510, 539, 543 |
| TaaI | ACNGT | 1 cut(s) | 478 |
| TaqI | TCGA | 2 cut(s) | 599, 621 |
| TasI | AATT | 5 cut(s) | 65, 74, 202, 375, 616 |
| TatI | WGTACW | 1 cut(s) | 565 |
| TfiI | GAWTC | 2 cut(s) | 235, 584 |
| Tru1I | TTAA | 3 cut(s) | 53, 327, 637 |
| Tru9I | TTAA | 3 cut(s) | 53, 327, 637 |
| TscAI | CASTG | 2 cut(s) | 267, 405 |
| TseFI | GTSAC | 1 cut(s) | 126 |
| TseI | GCWGC | 2 cut(s) | 266, 358 |
| Tsp45I | GTSAC | 1 cut(s) | 126 |
| TspRI | CASTG | 2 cut(s) | 267, 405 |
| XapI | RAATTY | 3 cut(s) | 65, 375, 616 |
| XceI | RCATGY | 1 cut(s) | 371 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 523 |
| XspI | CTAG | 3 cut(s) | 510, 539, 543 |