Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 712 |
| AccI | GTMKAC | 1 cut(s) | 228 |
| AccII | CGCG | 1 cut(s) | 885 |
| AciI | CCGC | 2 cut(s) | 221, 233 |
| AclWI | GGATC | 4 cut(s) | 8, 126, 338, 538 |
| AcoI | YGGCCR | 2 cut(s) | 180, 833 |
| AcsI | RAATTY | 4 cut(s) | 126, 564, 580, 653 |
| AfaI | GTAC | 2 cut(s) | 343, 481 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 467, 722 |
| AflIII | ACRYGT | 1 cut(s) | 623 |
| AgsI | TTSAA | 1 cut(s) | 491 |
| AjnI | CCWGG | 1 cut(s) | 29 |
| AluBI | AGCT | 7 cut(s) | 7, 68, 194, 813, 821, 878, 902 |
| AluI | AGCT | 7 cut(s) | 7, 68, 194, 813, 821, 878, 902 |
| Alw26I | GTCTC | 1 cut(s) | 614 |
| AlwI | GGATC | 4 cut(s) | 8, 126, 338, 538 |
| AoxI | GGCC | 4 cut(s) | 180, 334, 762, 833 |
| ApeKI | GCWGC | 1 cut(s) | 473 |
| ApoI | RAATTY | 4 cut(s) | 126, 564, 580, 653 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 79, 111 |
| AspLEI | GCGC | 1 cut(s) | 885 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| AsuC2I | CCSGG | 1 cut(s) | 723 |
| AsuHPI | GGTGA | 2 cut(s) | 514, 841 |
| AvaII | GGWCC | 1 cut(s) | 27 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 449, 482 |
| BalI | TGGCCA | 1 cut(s) | 182 |
| BanI | GGYRCC | 1 cut(s) | 712 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 97, 129, 387, 419 |
| BbvI | GCAGC | 1 cut(s) | 460 |
| BccI | CCATC | 4 cut(s) | 699, 740, 800, 881 |
| BciT130I | CCWGG | 1 cut(s) | 31 |
| BciVI | GTATCC | 1 cut(s) | 450 |
| BcnI | CCSGG | 1 cut(s) | 723 |
| BcoDI | GTCTC | 1 cut(s) | 614 |
| BfaI | CTAG | 4 cut(s) | 276, 801, 875, 899 |
| BfmI | CTRYAG | 1 cut(s) | 911 |
| BfuI | GTATCC | 1 cut(s) | 450 |
| BisI | GCNGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 1 cut(s) | 475 |
| BmcAI | AGTACT | 2 cut(s) | 343, 481 |
| Bme1390I | CCNGG | 2 cut(s) | 31, 723 |
| Bme18I | GGWCC | 1 cut(s) | 27 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmiI | GGNNCC | 2 cut(s) | 213, 714 |
| BmrFI | CCNGG | 2 cut(s) | 31, 723 |
| BpuMI | CCSGG | 1 cut(s) | 723 |
| BsaAI | YACGTR | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 183, 525 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 521, 551 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 467, 722 |
| BseBI | CCWGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 3 cut(s) | 30, 183, 525 |
| BseGI | GGATG | 2 cut(s) | 385, 791 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 467, 722 |
| BseMII | CTCAG | 1 cut(s) | 609 |
| BseRI | GAGGAG | 2 cut(s) | 789, 792 |
| BseXI | GCAGC | 1 cut(s) | 460 |
| BseYI | CCCAGC | 1 cut(s) | 452 |
| Bsh1236I | CGCG | 1 cut(s) | 885 |
| BshFI | GGCC | 4 cut(s) | 182, 336, 764, 835 |
| BshNI | GGYRCC | 1 cut(s) | 712 |
| BsiSI | CCGG | 1 cut(s) | 722 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 467, 722 |
| BsmAI | GTCTC | 1 cut(s) | 614 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| BsnI | GGCC | 4 cut(s) | 182, 336, 764, 835 |
| Bsp143I | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| BspACI | CCGC | 2 cut(s) | 221, 233 |
| BspANI | GGCC | 4 cut(s) | 182, 336, 764, 835 |
| BspCNI | CTCAG | 1 cut(s) | 610 |
| BspFNI | CGCG | 1 cut(s) | 885 |
| BspHI | TCATGA | 1 cut(s) | 391 |
| BspLI | GGNNCC | 2 cut(s) | 213, 714 |
| BspPI | GGATC | 4 cut(s) | 8, 126, 338, 538 |
| BspT107I | GGYRCC | 1 cut(s) | 712 |
| BssECI | CCNNGG | 3 cut(s) | 30, 183, 525 |
| BssMI | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| BssT1I | CCWWGG | 2 cut(s) | 183, 525 |
| Bst2UI | CCWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 912 |
| BstBAI | YACGTR | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 294, 612 |
| BstDEI | CTNAG | 3 cut(s) | 338, 345, 618 |
| BstF5I | GGATG | 2 cut(s) | 385, 791 |
| BstFNI | CGCG | 1 cut(s) | 885 |
| BstHHI | GCGC | 1 cut(s) | 885 |
| BstKTI | GATC | 5 cut(s) | 16, 121, 333, 546, 738 |
| BstMAI | GTCTC | 1 cut(s) | 614 |
| BstMBI | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 293, 827 |
| BstNI | CCWGG | 1 cut(s) | 31 |
| BstNSI | RCATGY | 3 cut(s) | 296, 614, 627 |
| BstSCI | CCNGG | 2 cut(s) | 29, 721 |
| BstSFI | CTRYAG | 1 cut(s) | 911 |
| BstUI | CGCG | 1 cut(s) | 885 |
| BstV1I | GCAGC | 1 cut(s) | 460 |
| BstX2I | RGATCY | 1 cut(s) | 543 |
| BstYI | RGATCY | 1 cut(s) | 543 |
| BsuI | GTATCC | 1 cut(s) | 450 |
| BsuRI | GGCC | 4 cut(s) | 182, 336, 764, 835 |
| BtgZI | GCGATG | 1 cut(s) | 900 |
| BtsCI | GGATG | 2 cut(s) | 385, 791 |
| BtsIMutI | CAGTG | 2 cut(s) | 172, 908 |
| Cac8I | GCNNGC | 2 cut(s) | 294, 612 |
| CciI | TCATGA | 1 cut(s) | 391 |
| CfoI | GCGC | 1 cut(s) | 885 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| Csp6I | GTAC | 2 cut(s) | 342, 480 |
| CviAII | CATG | 5 cut(s) | 293, 392, 611, 624, 863 |
| CviQI | GTAC | 2 cut(s) | 342, 480 |
| DdeI | CTNAG | 3 cut(s) | 338, 345, 618 |
| DpnI | GATC | 5 cut(s) | 15, 120, 332, 545, 737 |
| DpnII | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| DraI | TTTAAA | 1 cut(s) | 658 |
| EaeI | YGGCCR | 2 cut(s) | 180, 833 |
| Eco130I | CCWWGG | 2 cut(s) | 183, 525 |
| Eco47I | GGWCC | 1 cut(s) | 27 |
| EcoRI | GAATTC | 1 cut(s) | 580 |
| EcoRII | CCWGG | 1 cut(s) | 29 |
| EcoT14I | CCWWGG | 2 cut(s) | 183, 525 |
| ErhI | CCWWGG | 2 cut(s) | 183, 525 |
| FaeI | CATG | 5 cut(s) | 296, 395, 614, 627, 866 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| FatI | CATG | 5 cut(s) | 292, 391, 610, 623, 862 |
| FauI | CCCGC | 1 cut(s) | 240 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 474 |
| FokI | GGATG | 2 cut(s) | 372, 798 |
| Fsp4HI | GCNGC | 1 cut(s) | 474 |
| FspBI | CTAG | 4 cut(s) | 276, 801, 875, 899 |
| GlaI | GCGC | 1 cut(s) | 884 |
| GluI | GCNGC | 1 cut(s) | 474 |
| GsaI | CCCAGC | 1 cut(s) | 456 |
| HaeIII | GGCC | 4 cut(s) | 182, 336, 764, 835 |
| HapII | CCGG | 1 cut(s) | 722 |
| HhaI | GCGC | 1 cut(s) | 885 |
| Hin1II | CATG | 5 cut(s) | 296, 395, 614, 627, 866 |
| Hin6I | GCGC | 1 cut(s) | 883 |
| HinP1I | GCGC | 1 cut(s) | 883 |
| HincII | GTYRAC | 2 cut(s) | 229, 514 |
| HindII | GTYRAC | 2 cut(s) | 229, 514 |
| HinfI | GANTC | 3 cut(s) | 100, 519, 891 |
| HpaII | CCGG | 1 cut(s) | 722 |
| HphI | GGTGA | 2 cut(s) | 514, 841 |
| Hpy166II | GTNNAC | 4 cut(s) | 27, 229, 501, 514 |
| Hpy188I | TCNGA | 3 cut(s) | 118, 330, 619 |
| Hpy188III | TCNNGA | 4 cut(s) | 247, 392, 491, 768 |
| Hpy8I | GTNNAC | 4 cut(s) | 27, 229, 501, 514 |
| Hpy99I | CGWCG | 1 cut(s) | 774 |
| HpyAV | CCTTC | 3 cut(s) | 600, 703, 854 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 912 |
| HpyCH4IV | ACGT | 1 cut(s) | 23 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 170, 292, 381, 476, 752 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 293, 827 |
| HpyF3I | CTNAG | 3 cut(s) | 338, 345, 618 |
| HpySE526I | ACGT | 1 cut(s) | 23 |
| Hsp92II | CATG | 5 cut(s) | 296, 395, 614, 627, 866 |
| HspAI | GCGC | 1 cut(s) | 883 |
| Kzo9I | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| LmnI | GCTCC | 2 cut(s) | 4, 217 |
| Lsp1109I | GCAGC | 1 cut(s) | 460 |
| MaeI | CTAG | 4 cut(s) | 276, 801, 875, 899 |
| MaeII | ACGT | 1 cut(s) | 23 |
| MalI | GATC | 5 cut(s) | 15, 120, 332, 545, 737 |
| MboI | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| MboII | GAAGA | 2 cut(s) | 407, 662 |
| MflI | RGATCY | 1 cut(s) | 543 |
| MlsI | TGGCCA | 1 cut(s) | 182 |
| MluNI | TGGCCA | 1 cut(s) | 182 |
| MlyI | GAGTC | 2 cut(s) | 109, 885 |
| Mox20I | TGGCCA | 1 cut(s) | 182 |
| MscI | TGGCCA | 1 cut(s) | 182 |
| MseI | TTAA | 3 cut(s) | 80, 138, 657 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| Msp20I | TGGCCA | 1 cut(s) | 182 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 1 cut(s) | 722 |
| MspR9I | CCNGG | 2 cut(s) | 31, 723 |
| MvaI | CCWGG | 1 cut(s) | 31 |
| MvnI | CGCG | 1 cut(s) | 885 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 293, 827 |
| NciI | CCSGG | 1 cut(s) | 723 |
| NdeII | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| NlaIII | CATG | 5 cut(s) | 296, 395, 614, 627, 866 |
| NlaIV | GGNNCC | 2 cut(s) | 213, 714 |
| NmeAIII | GCCGAG | 1 cut(s) | 811 |
| NspI | RCATGY | 3 cut(s) | 296, 614, 627 |
| PaeI | GCATGC | 2 cut(s) | 296, 614 |
| PagI | TCATGA | 1 cut(s) | 391 |
| PciI | ACATGT | 1 cut(s) | 623 |
| PfeI | GAWTC | 1 cut(s) | 519 |
| PkrI | GCNGC | 1 cut(s) | 475 |
| PleI | GAGTC | 2 cut(s) | 108, 885 |
| PpsI | GAGTC | 2 cut(s) | 108, 885 |
| Ppu21I | YACGTR | 1 cut(s) | 24 |
| PscI | ACATGT | 1 cut(s) | 623 |
| Psp6I | CCWGG | 1 cut(s) | 29 |
| PspFI | CCCAGC | 1 cut(s) | 452 |
| PspGI | CCWGG | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 2 cut(s) | 213, 714 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| PsuI | RGATCY | 1 cut(s) | 543 |
| PvuII | CAGCTG | 1 cut(s) | 68 |
| RsaI | GTAC | 2 cut(s) | 343, 481 |
| RsaNI | GTAC | 2 cut(s) | 342, 480 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SalI | GTCGAC | 1 cut(s) | 227 |
| SaqAI | TTAA | 3 cut(s) | 80, 138, 657 |
| SatI | GCNGC | 1 cut(s) | 474 |
| Sau3AI | GATC | 5 cut(s) | 13, 118, 330, 543, 735 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| ScaI | AGTACT | 2 cut(s) | 343, 481 |
| SchI | GAGTC | 2 cut(s) | 109, 885 |
| ScrFI | CCNGG | 2 cut(s) | 31, 723 |
| SfcI | CTRYAG | 1 cut(s) | 911 |
| SinI | GGWCC | 1 cut(s) | 27 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SphI | GCATGC | 2 cut(s) | 296, 614 |
| SsiI | CCGC | 2 cut(s) | 221, 233 |
| SspI | AATATT | 1 cut(s) | 316 |
| SspMI | CTAG | 4 cut(s) | 276, 801, 875, 899 |
| StyD4I | CCNGG | 2 cut(s) | 29, 721 |
| StyI | CCWWGG | 2 cut(s) | 183, 525 |
| TaaI | ACNGT | 2 cut(s) | 167, 912 |
| TaiI | ACGT | 1 cut(s) | 26 |
| TaqI | TCGA | 4 cut(s) | 228, 238, 685, 769 |
| TatI | WGTACW | 2 cut(s) | 341, 479 |
| TfiI | GAWTC | 1 cut(s) | 519 |
| Tru1I | TTAA | 3 cut(s) | 80, 138, 657 |
| Tru9I | TTAA | 3 cut(s) | 80, 138, 657 |
| TscAI | CASTG | 2 cut(s) | 172, 915 |
| TseI | GCWGC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 3 cut(s) | 408, 663, 851 |
| TspGWI | ACGGA | 2 cut(s) | 414, 785 |
| TspRI | CASTG | 2 cut(s) | 172, 915 |
| VpaK11BI | GGWCC | 1 cut(s) | 27 |
| XapI | RAATTY | 4 cut(s) | 126, 564, 580, 653 |
| XceI | RCATGY | 3 cut(s) | 296, 614, 627 |
| XmiI | GTMKAC | 1 cut(s) | 228 |
| XspI | CTAG | 4 cut(s) | 276, 801, 875, 899 |
| ZrmI | AGTACT | 2 cut(s) | 343, 481 |