Paired amphipathic helix protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NAM | PF02365 | 16 - 142 | 1.4e-51 | No apical meristem (NAM) protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 783 |
| Acc16I | TGCGCA | 1 cut(s) | 540 |
| AccBSI | CCGCTC | 2 cut(s) | 119, 269 |
| AccI | GTMKAC | 1 cut(s) | 150 |
| AccII | CGCG | 1 cut(s) | 995 |
| AciI | CCGC | 9 cut(s) | 38, 111, 117, 122, 269, 641, 845, 912, 995 |
| AclWI | GGATC | 3 cut(s) | 161, 461, 859 |
| AcyI | GRCGYC | 2 cut(s) | 345, 780 |
| AfaI | GTAC | 2 cut(s) | 158, 242 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 57, 198, 234, 386, 492, 496 |
| AluBI | AGCT | 8 cut(s) | 43, 82, 178, 254, 356, 768, 820, 982 |
| AluI | AGCT | 8 cut(s) | 43, 82, 178, 254, 356, 768, 820, 982 |
| Alw21I | GWGCWC | 1 cut(s) | 11 |
| AlwI | GGATC | 3 cut(s) | 161, 461, 859 |
| Ama87I | CYCGRG | 2 cut(s) | 50, 277 |
| AoxI | GGCC | 4 cut(s) | 189, 257, 451, 545 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 677, 709, 718, 750 |
| AspLEI | GCGC | 3 cut(s) | 449, 541, 1047 |
| AsuC2I | CCSGG | 2 cut(s) | 51, 52 |
| AsuHPI | GGTGA | 3 cut(s) | 26, 124, 995 |
| AsuII | TTCGAA | 1 cut(s) | 696 |
| AvaI | CYCGRG | 2 cut(s) | 50, 277 |
| AxyI | CCTNAGG | 1 cut(s) | 491 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 224, 257 |
| BauI | CACGAG | 1 cut(s) | 413 |
| Bbv12I | GWGCWC | 1 cut(s) | 11 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BccI | CCATC | 7 cut(s) | 143, 547, 595, 643, 759, 856, 1028 |
| BceAI | ACGGC | 2 cut(s) | 678, 814 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 401, 435 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcnI | CCSGG | 2 cut(s) | 51, 52 |
| BfaI | CTAG | 1 cut(s) | 255 |
| BfoI | RGCGCY | 1 cut(s) | 450 |
| BisI | GCNGC | 5 cut(s) | 41, 111, 270, 641, 996 |
| BlsI | GCNGC | 5 cut(s) | 42, 112, 271, 642, 997 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 52 |
| BmeT110I | CYCGRG | 2 cut(s) | 50, 277 |
| BmiI | GGNNCC | 3 cut(s) | 56, 62, 301 |
| BmrFI | CCNGG | 2 cut(s) | 51, 52 |
| BmrI | ACTGGG | 2 cut(s) | 514, 1059 |
| BmuI | ACTGGG | 2 cut(s) | 514, 1059 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 566, 598 |
| Bpu14I | TTCGAA | 1 cut(s) | 696 |
| BpuEI | CTTGAG | 2 cut(s) | 83, 440 |
| BpuMI | CCSGG | 2 cut(s) | 51, 52 |
| Bsa29I | ATCGAT | 1 cut(s) | 860 |
| BsaBI | GATNNNNATC | 1 cut(s) | 856 |
| BsaHI | GRCGYC | 2 cut(s) | 345, 780 |
| BsaJI | CCNNGG | 4 cut(s) | 50, 144, 170, 276 |
| BsaWI | WCCGGW | 4 cut(s) | 23, 57, 127, 296 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 5, 35, 194, 224, 791, 821, 924, 954 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 57, 198, 234, 386, 492, 496 |
| Bse118I | RCCGGY | 1 cut(s) | 449 |
| Bse1I | ACTGG | 3 cut(s) | 509, 619, 1065 |
| Bse21I | CCTNAGG | 1 cut(s) | 491 |
| Bse8I | GATNNNNATC | 1 cut(s) | 856 |
| BseCI | ATCGAT | 1 cut(s) | 860 |
| BseDI | CCNNGG | 4 cut(s) | 50, 144, 170, 276 |
| BseGI | GGATG | 2 cut(s) | 505, 1039 |
| BseJI | GATNNNNATC | 1 cut(s) | 856 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 57, 198, 234, 386, 492, 496 |
| BseNI | ACTGG | 3 cut(s) | 509, 619, 1065 |
| BseRI | GAGGAG | 2 cut(s) | 92, 590 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| Bsh1236I | CGCG | 1 cut(s) | 995 |
| Bsh1285I | CGRYCG | 1 cut(s) | 72 |
| BshFI | GGCC | 4 cut(s) | 191, 259, 453, 547 |
| BshVI | ATCGAT | 1 cut(s) | 860 |
| BsiEI | CGRYCG | 1 cut(s) | 72 |
| BsiHKAI | GWGCWC | 1 cut(s) | 11 |
| BsiHKCI | CYCGRG | 2 cut(s) | 50, 277 |
| BsiSI | CCGG | 6 cut(s) | 24, 51, 58, 128, 297, 450 |
| BslFI | GGGAC | 2 cut(s) | 210, 880 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 57, 198, 234, 386, 492, 496 |
| BsmFI | GGGAC | 2 cut(s) | 210, 880 |
| BsnI | GGCC | 4 cut(s) | 191, 259, 453, 547 |
| BsoBI | CYCGRG | 2 cut(s) | 50, 277 |
| Bsp119I | TTCGAA | 1 cut(s) | 696 |
| Bsp1286I | GDGCHC | 1 cut(s) | 11 |
| Bsp1407I | TGTACA | 1 cut(s) | 156 |
| Bsp143I | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| Bsp19I | CCATGG | 1 cut(s) | 170 |
| BspACI | CCGC | 9 cut(s) | 38, 111, 117, 122, 269, 641, 845, 912, 995 |
| BspANI | GGCC | 4 cut(s) | 191, 259, 453, 547 |
| BspDI | ATCGAT | 1 cut(s) | 860 |
| BspFNI | CGCG | 1 cut(s) | 995 |
| BspLI | GGNNCC | 3 cut(s) | 56, 62, 301 |
| BspPI | GGATC | 3 cut(s) | 161, 461, 859 |
| BspT104I | TTCGAA | 1 cut(s) | 696 |
| BsrBI | CCGCTC | 2 cut(s) | 119, 269 |
| BsrFI | RCCGGY | 1 cut(s) | 449 |
| BsrGI | TGTACA | 1 cut(s) | 156 |
| BsrI | ACTGG | 3 cut(s) | 509, 619, 1065 |
| BssAI | RCCGGY | 1 cut(s) | 449 |
| BssECI | CCNNGG | 4 cut(s) | 50, 144, 170, 276 |
| BssMI | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| BssNI | GRCGYC | 2 cut(s) | 345, 780 |
| BssSI | CACGAG | 1 cut(s) | 413 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst2BI | CACGAG | 1 cut(s) | 413 |
| Bst4CI | ACNGT | 3 cut(s) | 371, 731, 1053 |
| BstACI | GRCGYC | 2 cut(s) | 345, 780 |
| BstAUI | TGTACA | 1 cut(s) | 156 |
| BstBI | TTCGAA | 1 cut(s) | 696 |
| BstC8I | GCNNGC | 4 cut(s) | 451, 722, 792, 822 |
| BstDEI | CTNAG | 1 cut(s) | 491 |
| BstDSI | CCRYGG | 1 cut(s) | 170 |
| BstEII | GGTNACC | 2 cut(s) | 32, 130 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 384, 490 |
| BstF5I | GGATG | 2 cut(s) | 505, 1039 |
| BstFNI | CGCG | 1 cut(s) | 995 |
| BstH2I | RGCGCY | 1 cut(s) | 450 |
| BstHHI | GCGC | 3 cut(s) | 449, 541, 1047 |
| BstKTI | GATC | 5 cut(s) | 169, 469, 565, 854, 904 |
| BstMBI | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| BstMCI | CGRYCG | 1 cut(s) | 72 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 116, 640, 646, 774, 826, 918, 979 |
| BstPI | GGTNACC | 2 cut(s) | 32, 130 |
| BstSCI | CCNGG | 2 cut(s) | 49, 50 |
| BstUI | CGCG | 1 cut(s) | 995 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 860 |
| Bsu36I | CCTNAGG | 1 cut(s) | 491 |
| BsuRI | GGCC | 4 cut(s) | 191, 259, 453, 547 |
| BsuTUI | ATCGAT | 1 cut(s) | 860 |
| BtgI | CCRYGG | 1 cut(s) | 170 |
| BtgZI | GCGATG | 2 cut(s) | 124, 621 |
| BtsCI | GGATG | 2 cut(s) | 505, 1039 |
| BtsI | GCAGTG | 1 cut(s) | 928 |
| BtsIMutI | CAGTG | 1 cut(s) | 928 |
| Cac8I | GCNNGC | 4 cut(s) | 451, 722, 792, 822 |
| CfoI | GCGC | 3 cut(s) | 449, 541, 1047 |
| Cfr10I | RCCGGY | 1 cut(s) | 449 |
| Cfr9I | CCCGGG | 1 cut(s) | 50 |
| ClaI | ATCGAT | 1 cut(s) | 860 |
| CseI | GACGC | 3 cut(s) | 334, 803, 813 |
| Csp6I | GTAC | 2 cut(s) | 157, 241 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 895, 930 |
| CviAII | CATG | 2 cut(s) | 171, 760 |
| CviQI | GTAC | 2 cut(s) | 157, 241 |
| DdeI | CTNAG | 1 cut(s) | 491 |
| DpnI | GATC | 5 cut(s) | 168, 468, 564, 853, 903 |
| DpnII | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco147I | AGGCCT | 1 cut(s) | 547 |
| Eco81I | CCTNAGG | 1 cut(s) | 491 |
| Eco88I | CYCGRG | 2 cut(s) | 50, 277 |
| Eco91I | GGTNACC | 2 cut(s) | 32, 130 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 384, 490 |
| EcoO65I | GGTNACC | 2 cut(s) | 32, 130 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaeI | CATG | 2 cut(s) | 174, 763 |
| FaiI | YATR | 8 cut(s) | 172, 410, 551, 761, 897, 971, 1070, 1084 |
| FaqI | GGGAC | 2 cut(s) | 210, 880 |
| FatI | CATG | 2 cut(s) | 170, 759 |
| FauI | CCCGC | 2 cut(s) | 45, 838 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| FblI | GTMKAC | 1 cut(s) | 150 |
| Fnu4HI | GCNGC | 5 cut(s) | 41, 111, 270, 641, 996 |
| FokI | GGATG | 2 cut(s) | 512, 1046 |
| Fsp4HI | GCNGC | 5 cut(s) | 41, 111, 270, 641, 996 |
| FspBI | CTAG | 1 cut(s) | 255 |
| FspI | TGCGCA | 1 cut(s) | 540 |
| GlaI | GCGC | 3 cut(s) | 448, 540, 1046 |
| GluI | GCNGC | 5 cut(s) | 41, 111, 270, 641, 996 |
| HaeII | RGCGCY | 1 cut(s) | 450 |
| HaeIII | GGCC | 4 cut(s) | 191, 259, 453, 547 |
| HapII | CCGG | 6 cut(s) | 24, 51, 58, 128, 297, 450 |
| HgaI | GACGC | 3 cut(s) | 334, 803, 813 |
| HhaI | GCGC | 3 cut(s) | 449, 541, 1047 |
| Hin1I | GRCGYC | 2 cut(s) | 345, 780 |
| Hin1II | CATG | 2 cut(s) | 174, 763 |
| Hin6I | GCGC | 3 cut(s) | 447, 539, 1045 |
| HinP1I | GCGC | 3 cut(s) | 447, 539, 1045 |
| HincII | GTYRAC | 2 cut(s) | 151, 430 |
| HindII | GTYRAC | 2 cut(s) | 151, 430 |
| HinfI | GANTC | 4 cut(s) | 14, 313, 390, 581 |
| HpaII | CCGG | 6 cut(s) | 24, 51, 58, 128, 297, 450 |
| HphI | GGTGA | 3 cut(s) | 26, 124, 995 |
| Hpy166II | GTNNAC | 3 cut(s) | 91, 151, 430 |
| Hpy188I | TCNGA | 4 cut(s) | 318, 384, 471, 519 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 349, 464 |
| Hpy8I | GTNNAC | 3 cut(s) | 91, 151, 430 |
| Hpy99I | CGWCG | 7 cut(s) | 77, 437, 683, 782, 785, 829, 883 |
| HpyAV | CCTTC | 2 cut(s) | 692, 710 |
| HpyCH4III | ACNGT | 3 cut(s) | 371, 731, 1053 |
| HpyCH4IV | ACGT | 2 cut(s) | 194, 780 |
| HpyCH4V | TGCA | 2 cut(s) | 412, 724 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 116, 640, 646, 774, 826, 918, 979 |
| HpyF3I | CTNAG | 1 cut(s) | 491 |
| HpySE526I | ACGT | 2 cut(s) | 194, 780 |
| Hsp92I | GRCGYC | 2 cut(s) | 345, 780 |
| Hsp92II | CATG | 2 cut(s) | 174, 763 |
| HspAI | GCGC | 3 cut(s) | 447, 539, 1045 |
| KroI | GCCGGC | 1 cut(s) | 449 |
| KroNI | GCCGGC | 1 cut(s) | 451 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| Kzo9I | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| LmnI | GCTCC | 6 cut(s) | 48, 79, 124, 175, 202, 251 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| MaeI | CTAG | 1 cut(s) | 255 |
| MaeII | ACGT | 2 cut(s) | 194, 780 |
| MaeIII | GTNAC | 2 cut(s) | 32, 130 |
| MalI | GATC | 5 cut(s) | 168, 468, 564, 853, 903 |
| MbiI | CCGCTC | 2 cut(s) | 119, 269 |
| MboI | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| MboII | GAAGA | 4 cut(s) | 115, 541, 685, 1052 |
| MfeI | CAATTG | 1 cut(s) | 400 |
| MhlI | GDGCHC | 1 cut(s) | 11 |
| MluCI | AATT | 5 cut(s) | 400, 439, 688, 871, 1072 |
| MlyI | GAGTC | 2 cut(s) | 8, 575 |
| MmeI | TCCRAC | 3 cut(s) | 494, 497, 765 |
| MroNI | GCCGGC | 1 cut(s) | 449 |
| MspI | CCGG | 6 cut(s) | 24, 51, 58, 128, 297, 450 |
| MspR9I | CCNGG | 2 cut(s) | 51, 52 |
| MunI | CAATTG | 1 cut(s) | 400 |
| MvnI | CGCG | 1 cut(s) | 995 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 116, 640, 646, 774, 826, 918, 979 |
| NaeI | GCCGGC | 1 cut(s) | 451 |
| NciI | CCSGG | 2 cut(s) | 51, 52 |
| NcoI | CCATGG | 1 cut(s) | 170 |
| NdeII | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| NgoMIV | GCCGGC | 1 cut(s) | 449 |
| NlaIII | CATG | 2 cut(s) | 174, 763 |
| NlaIV | GGNNCC | 3 cut(s) | 56, 62, 301 |
| NmeAIII | GCCGAG | 1 cut(s) | 169 |
| NmuCI | GTSAC | 2 cut(s) | 32, 130 |
| NsbI | TGCGCA | 1 cut(s) | 540 |
| NspV | TTCGAA | 1 cut(s) | 696 |
| PceI | AGGCCT | 1 cut(s) | 547 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 147, 432 |
| PdiI | GCCGGC | 1 cut(s) | 451 |
| PfeI | GAWTC | 2 cut(s) | 313, 390 |
| PkrI | GCNGC | 5 cut(s) | 42, 112, 271, 642, 997 |
| PleI | GAGTC | 2 cut(s) | 8, 575 |
| PpsI | GAGTC | 2 cut(s) | 8, 575 |
| PspEI | GGTNACC | 2 cut(s) | 32, 130 |
| PspN4I | GGNNCC | 3 cut(s) | 56, 62, 301 |
| RsaI | GTAC | 2 cut(s) | 158, 242 |
| RsaNI | GTAC | 2 cut(s) | 157, 241 |
| SalI | GTCGAC | 1 cut(s) | 149 |
| SatI | GCNGC | 5 cut(s) | 41, 111, 270, 641, 996 |
| Sau3AI | GATC | 5 cut(s) | 166, 466, 562, 851, 901 |
| SchI | GAGTC | 2 cut(s) | 8, 575 |
| ScrFI | CCNGG | 2 cut(s) | 51, 52 |
| SduI | GDGCHC | 1 cut(s) | 11 |
| SfuI | TTCGAA | 1 cut(s) | 696 |
| SmaI | CCCGGG | 1 cut(s) | 52 |
| SmlI | CTYRAG | 2 cut(s) | 98, 455 |
| SmoI | CTYRAG | 2 cut(s) | 98, 455 |
| Sse9I | AATT | 5 cut(s) | 400, 439, 688, 871, 1072 |
| SseBI | AGGCCT | 1 cut(s) | 547 |
| SsiI | CCGC | 9 cut(s) | 38, 111, 117, 122, 269, 641, 845, 912, 995 |
| SspMI | CTAG | 1 cut(s) | 255 |
| StuI | AGGCCT | 1 cut(s) | 547 |
| StyD4I | CCNGG | 2 cut(s) | 49, 50 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 3 cut(s) | 371, 731, 1053 |
| TaiI | ACGT | 2 cut(s) | 197, 783 |
| TaqI | TCGA | 9 cut(s) | 150, 165, 323, 599, 696, 710, 770, 860, 881 |
| TaqII | GACCGA | 1 cut(s) | 86 |
| TasI | AATT | 5 cut(s) | 400, 439, 688, 871, 1072 |
| TatI | WGTACW | 1 cut(s) | 156 |
| TauI | GCSGC | 4 cut(s) | 113, 272, 643, 998 |
| TfiI | GAWTC | 2 cut(s) | 313, 390 |
| TscAI | CASTG | 1 cut(s) | 928 |
| TseFI | GTSAC | 2 cut(s) | 32, 130 |
| TseI | GCWGC | 1 cut(s) | 40 |
| Tsp45I | GTSAC | 2 cut(s) | 32, 130 |
| TspDTI | ATGAA | 6 cut(s) | 748, 864, 884, 960, 1046, 1085 |
| TspGWI | ACGGA | 4 cut(s) | 26, 250, 264, 342 |
| TspMI | CCCGGG | 1 cut(s) | 50 |
| TspRI | CASTG | 1 cut(s) | 928 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 384, 490 |
| XmaI | CCCGGG | 1 cut(s) | 50 |
| XmiI | GTMKAC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 255 |
| ZraI | GACGTC | 1 cut(s) | 781 |