Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thioredoxin | PF00085 | 86 - 184 | 6.7e-18 | Thioredoxin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 348 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 377 |
| AciI | CCGC | 1 cut(s) | 348 |
| AclWI | GGATC | 1 cut(s) | 210 |
| AcsI | RAATTY | 1 cut(s) | 145 |
| AcuI | CTGAAG | 1 cut(s) | 540 |
| AfaI | GTAC | 1 cut(s) | 398 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 377 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgsI | TTSAA | 5 cut(s) | 132, 280, 466, 500, 550 |
| AjnI | CCWGG | 1 cut(s) | 54 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 130, 162 |
| AleI | CACNNNNGTG | 1 cut(s) | 338 |
| AluBI | AGCT | 4 cut(s) | 16, 299, 368, 518 |
| AluI | AGCT | 4 cut(s) | 16, 299, 368, 518 |
| Alw21I | GWGCWC | 2 cut(s) | 18, 241 |
| Alw26I | GTCTC | 1 cut(s) | 315 |
| AlwI | GGATC | 1 cut(s) | 210 |
| AoxI | GGCC | 2 cut(s) | 350, 439 |
| ApeKI | GCWGC | 5 cut(s) | 8, 81, 95, 515, 539 |
| ApoI | RAATTY | 1 cut(s) | 145 |
| AspLEI | GCGC | 3 cut(s) | 63, 95, 287 |
| AspS9I | GGNCC | 2 cut(s) | 350, 439 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 162 |
| AxyI | CCTNAGG | 1 cut(s) | 232 |
| BanII | GRGCYC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 18, 241 |
| BbvI | GCAGC | 5 cut(s) | 20, 82, 93, 526, 527 |
| BccI | CCATC | 1 cut(s) | 299 |
| BceAI | ACGGC | 1 cut(s) | 337 |
| BciT130I | CCWGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 1 cut(s) | 315 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BfuAI | ACCTGC | 1 cut(s) | 348 |
| BisI | GCNGC | 5 cut(s) | 9, 82, 96, 516, 540 |
| BlsI | GCNGC | 5 cut(s) | 10, 83, 97, 517, 541 |
| Bme1390I | CCNGG | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 2 cut(s) | 350, 439 |
| BmrFI | CCNGG | 1 cut(s) | 56 |
| BmsI | GCATC | 1 cut(s) | 526 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| BsaI | GGTCTC | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 1 cut(s) | 442 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 377 |
| Bse118I | RCCGGY | 1 cut(s) | 316 |
| Bse1I | ACTGG | 2 cut(s) | 371, 490 |
| Bse21I | CCTNAGG | 1 cut(s) | 232 |
| BseBI | CCWGG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 1 cut(s) | 442 |
| BseGI | GGATG | 2 cut(s) | 227, 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 377 |
| BseMII | CTCAG | 4 cut(s) | 57, 246, 258, 281 |
| BseNI | ACTGG | 2 cut(s) | 371, 490 |
| BseRI | GAGGAG | 2 cut(s) | 165, 449 |
| BseXI | GCAGC | 5 cut(s) | 20, 82, 93, 526, 527 |
| BsgI | GTGCAG | 2 cut(s) | 376, 525 |
| BshFI | GGCC | 2 cut(s) | 352, 441 |
| BsiHKAI | GWGCWC | 2 cut(s) | 18, 241 |
| BsiSI | CCGG | 2 cut(s) | 317, 578 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 377 |
| BsmAI | GTCTC | 1 cut(s) | 315 |
| BsnI | GGCC | 2 cut(s) | 352, 441 |
| Bso31I | GGTCTC | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 241 |
| Bsp143I | GATC | 1 cut(s) | 215 |
| BspACI | CCGC | 1 cut(s) | 348 |
| BspANI | GGCC | 2 cut(s) | 352, 441 |
| BspCNI | CTCAG | 4 cut(s) | 56, 245, 259, 282 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspMI | ACCTGC | 1 cut(s) | 348 |
| BspPI | GGATC | 1 cut(s) | 210 |
| BspQI | GCTCTTC | 2 cut(s) | 105, 275 |
| BspTNI | GGTCTC | 1 cut(s) | 315 |
| BsrFI | RCCGGY | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 371, 490 |
| BssAI | RCCGGY | 1 cut(s) | 316 |
| BssECI | CCNNGG | 1 cut(s) | 442 |
| BssMI | GATC | 1 cut(s) | 215 |
| BssT1I | CCWWGG | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 1 cut(s) | 56 |
| Bst6I | CTCTTC | 2 cut(s) | 105, 275 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 4 cut(s) | 72, 318, 350, 544 |
| BstDEI | CTNAG | 4 cut(s) | 43, 232, 267, 290 |
| BstF5I | GGATG | 2 cut(s) | 227, 277 |
| BstHHI | GCGC | 3 cut(s) | 63, 95, 287 |
| BstKTI | GATC | 1 cut(s) | 218 |
| BstMAI | GTCTC | 1 cut(s) | 315 |
| BstMBI | GATC | 1 cut(s) | 215 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 67, 90, 291, 354, 539 |
| BstNI | CCWGG | 1 cut(s) | 56 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSCI | CCNGG | 1 cut(s) | 54 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 5 cut(s) | 20, 82, 93, 526, 527 |
| Bsu36I | CCTNAGG | 1 cut(s) | 232 |
| BsuRI | GGCC | 2 cut(s) | 352, 441 |
| BtsCI | GGATG | 2 cut(s) | 227, 277 |
| BtsI | GCAGTG | 2 cut(s) | 333, 345 |
| BtsIMutI | CAGTG | 3 cut(s) | 287, 333, 345 |
| BveI | ACCTGC | 1 cut(s) | 348 |
| Cac8I | GCNNGC | 4 cut(s) | 72, 318, 350, 544 |
| CfoI | GCGC | 3 cut(s) | 63, 95, 287 |
| Cfr10I | RCCGGY | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 2 cut(s) | 350, 439 |
| Csp6I | GTAC | 1 cut(s) | 397 |
| CviAII | CATG | 1 cut(s) | 404 |
| CviJI | RGCY | 8 cut(s) | 16, 49, 299, 352, 368, 441, 518, 577 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 49, 299, 352, 368, 441, 518, 577 |
| CviQI | GTAC | 1 cut(s) | 397 |
| DdeI | CTNAG | 4 cut(s) | 43, 232, 267, 290 |
| DpnI | GATC | 1 cut(s) | 217 |
| DpnII | GATC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 2 cut(s) | 105, 275 |
| EarI | CTCTTC | 2 cut(s) | 105, 275 |
| Ecl136II | GAGCTC | 1 cut(s) | 16 |
| Eco130I | CCWWGG | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 1 cut(s) | 18 |
| Eco31I | GGTCTC | 1 cut(s) | 315 |
| Eco53kI | GAGCTC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 540 |
| Eco81I | CCTNAGG | 1 cut(s) | 232 |
| EcoICRI | GAGCTC | 1 cut(s) | 16 |
| EcoO109I | RGGNCCY | 1 cut(s) | 439 |
| EcoRII | CCWGG | 1 cut(s) | 54 |
| EcoT14I | CCWWGG | 1 cut(s) | 442 |
| EcoT38I | GRGCYC | 1 cut(s) | 18 |
| ErhI | CCWWGG | 1 cut(s) | 442 |
| FaeI | CATG | 1 cut(s) | 407 |
| FaiI | YATR | 2 cut(s) | 365, 405 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 566 |
| FatI | CATG | 1 cut(s) | 403 |
| FauI | CCCGC | 1 cut(s) | 341 |
| Fnu4HI | GCNGC | 5 cut(s) | 9, 82, 96, 516, 540 |
| FokI | GGATG | 2 cut(s) | 214, 284 |
| FriOI | GRGCYC | 1 cut(s) | 18 |
| Fsp4HI | GCNGC | 5 cut(s) | 9, 82, 96, 516, 540 |
| GlaI | GCGC | 3 cut(s) | 62, 94, 286 |
| GluI | GCNGC | 5 cut(s) | 9, 82, 96, 516, 540 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HaeIII | GGCC | 2 cut(s) | 352, 441 |
| HapII | CCGG | 2 cut(s) | 317, 578 |
| HhaI | GCGC | 3 cut(s) | 63, 95, 287 |
| Hin1II | CATG | 1 cut(s) | 407 |
| Hin6I | GCGC | 3 cut(s) | 61, 93, 285 |
| HinP1I | GCGC | 3 cut(s) | 61, 93, 285 |
| HpaII | CCGG | 2 cut(s) | 317, 578 |
| HphI | GGTGA | 2 cut(s) | 101, 162 |
| Hpy188I | TCNGA | 1 cut(s) | 268 |
| HpyAV | CCTTC | 2 cut(s) | 132, 202 |
| HpyCH4V | TGCA | 4 cut(s) | 338, 357, 452, 542 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 67, 90, 291, 354, 539 |
| HpyF3I | CTNAG | 4 cut(s) | 43, 232, 267, 290 |
| Hsp92II | CATG | 1 cut(s) | 407 |
| HspAI | GCGC | 3 cut(s) | 61, 93, 285 |
| KroI | GCCGGC | 1 cut(s) | 316 |
| KroNI | GCCGGC | 1 cut(s) | 318 |
| Kzo9I | GATC | 1 cut(s) | 215 |
| LguI | GCTCTTC | 2 cut(s) | 105, 275 |
| LmnI | GCTCC | 2 cut(s) | 244, 373 |
| LpnPI | CCDG | 8 cut(s) | 30, 41, 68, 219, 330, 343, 384, 503 |
| Lsp1109I | GCAGC | 5 cut(s) | 20, 82, 93, 526, 527 |
| LweI | GCATC | 1 cut(s) | 526 |
| MaeIII | GTNAC | 1 cut(s) | 406 |
| MalI | GATC | 1 cut(s) | 217 |
| MboI | GATC | 1 cut(s) | 215 |
| MboII | GAAGA | 5 cut(s) | 48, 92, 95, 159, 292 |
| MfeI | CAATTG | 1 cut(s) | 65 |
| MhlI | GDGCHC | 2 cut(s) | 18, 241 |
| MluCI | AATT | 4 cut(s) | 65, 145, 199, 383 |
| MmeI | TCCRAC | 1 cut(s) | 270 |
| MroNI | GCCGGC | 1 cut(s) | 316 |
| MseI | TTAA | 2 cut(s) | 261, 417 |
| MslI | CAYNNNNRTG | 2 cut(s) | 26, 338 |
| MspA1I | CMGCKG | 1 cut(s) | 518 |
| MspI | CCGG | 2 cut(s) | 317, 578 |
| MspR9I | CCNGG | 1 cut(s) | 56 |
| MunI | CAATTG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 56 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 67, 90, 291, 354, 539 |
| NaeI | GCCGGC | 1 cut(s) | 318 |
| NdeII | GATC | 1 cut(s) | 215 |
| NgoMIV | GCCGGC | 1 cut(s) | 316 |
| NlaIII | CATG | 1 cut(s) | 407 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| NspI | RCATGY | 1 cut(s) | 407 |
| OliI | CACNNNNGTG | 1 cut(s) | 338 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 2 cut(s) | 105, 275 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 29 |
| PdiI | GCCGGC | 1 cut(s) | 318 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 377 |
| PkrI | GCNGC | 5 cut(s) | 10, 83, 97, 517, 541 |
| PscI | ACATGT | 1 cut(s) | 403 |
| Psp124BI | GAGCTC | 1 cut(s) | 18 |
| Psp6I | CCWGG | 1 cut(s) | 54 |
| PspGI | CCWGG | 1 cut(s) | 54 |
| PspPI | GGNCC | 2 cut(s) | 350, 439 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PvuII | CAGCTG | 1 cut(s) | 518 |
| RsaI | GTAC | 1 cut(s) | 398 |
| RsaNI | GTAC | 1 cut(s) | 397 |
| RseI | CAYNNNNRTG | 2 cut(s) | 26, 338 |
| SacI | GAGCTC | 1 cut(s) | 18 |
| SapI | GCTCTTC | 2 cut(s) | 105, 275 |
| SaqAI | TTAA | 2 cut(s) | 261, 417 |
| SatI | GCNGC | 5 cut(s) | 9, 82, 96, 516, 540 |
| Sau3AI | GATC | 1 cut(s) | 215 |
| Sau96I | GGNCC | 2 cut(s) | 350, 439 |
| ScrFI | CCNGG | 1 cut(s) | 56 |
| SduI | GDGCHC | 2 cut(s) | 18, 241 |
| SfaNI | GCATC | 1 cut(s) | 526 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 26, 338 |
| Sse9I | AATT | 4 cut(s) | 65, 145, 199, 383 |
| SsiI | CCGC | 1 cut(s) | 348 |
| SspI | AATATT | 1 cut(s) | 469 |
| SstI | GAGCTC | 1 cut(s) | 18 |
| StyD4I | CCNGG | 1 cut(s) | 54 |
| StyI | CCWWGG | 1 cut(s) | 442 |
| TaqI | TCGA | 2 cut(s) | 18, 214 |
| TasI | AATT | 4 cut(s) | 65, 145, 199, 383 |
| Tru1I | TTAA | 2 cut(s) | 261, 417 |
| Tru9I | TTAA | 2 cut(s) | 261, 417 |
| TscAI | CASTG | 3 cut(s) | 294, 340, 345 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| TseI | GCWGC | 5 cut(s) | 8, 81, 95, 515, 539 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 2 cut(s) | 138, 352 |
| TspRI | CASTG | 3 cut(s) | 294, 340, 345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 377 |
| XapI | RAATTY | 1 cut(s) | 145 |
| XceI | RCATGY | 1 cut(s) | 407 |