Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1374 |
| AccI | GTMKAC | 2 cut(s) | 314, 1006 |
| AciI | CCGC | 2 cut(s) | 931, 1018 |
| AclI | AACGTT | 1 cut(s) | 1656 |
| AclWI | GGATC | 1 cut(s) | 1029 |
| AcoI | YGGCCR | 1 cut(s) | 822 |
| AcsI | RAATTY | 5 cut(s) | 544, 642, 773, 874, 1565 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfaI | GTAC | 2 cut(s) | 514, 1425 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1223 |
| AgeI | ACCGGT | 1 cut(s) | 1633 |
| AgsI | TTSAA | 3 cut(s) | 125, 923, 1507 |
| AjnI | CCWGG | 1 cut(s) | 93 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 150, 182, 1040, 1072, 1556, 1588 |
| Alw21I | GWGCWC | 3 cut(s) | 915, 1630, 1722 |
| Alw26I | GTCTC | 1 cut(s) | 859 |
| AlwI | GGATC | 1 cut(s) | 1029 |
| Ama87I | CYCGRG | 1 cut(s) | 697 |
| AoxI | GGCC | 3 cut(s) | 280, 822, 1595 |
| ApeKI | GCWGC | 3 cut(s) | 884, 989, 1585 |
| ApoI | RAATTY | 5 cut(s) | 544, 642, 773, 874, 1565 |
| AsiGI | ACCGGT | 1 cut(s) | 1633 |
| AspLEI | GCGC | 2 cut(s) | 424, 1611 |
| AsuHPI | GGTGA | 1 cut(s) | 64 |
| AsuII | TTCGAA | 2 cut(s) | 548, 1238 |
| AsuNHI | GCTAGC | 1 cut(s) | 1411 |
| AvaI | CYCGRG | 1 cut(s) | 697 |
| BalI | TGGCCA | 1 cut(s) | 824 |
| BanII | GRGCYC | 2 cut(s) | 915, 1630 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1219, 1251 |
| BbsI | GAAGAC | 2 cut(s) | 439, 1247 |
| Bbv12I | GWGCWC | 3 cut(s) | 915, 1630, 1722 |
| BbvI | GCAGC | 3 cut(s) | 896, 976, 1597 |
| BccI | CCATC | 3 cut(s) | 833, 1043, 1655 |
| BceAI | ACGGC | 1 cut(s) | 1025 |
| BciT130I | CCWGG | 1 cut(s) | 95 |
| BcoDI | GTCTC | 1 cut(s) | 859 |
| BfaI | CTAG | 6 cut(s) | 387, 518, 768, 1101, 1412, 1599 |
| BfmI | CTRYAG | 1 cut(s) | 647 |
| BfoI | RGCGCY | 1 cut(s) | 425 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1594 |
| BisI | GCNGC | 3 cut(s) | 885, 990, 1586 |
| BlsI | GCNGC | 3 cut(s) | 886, 991, 1587 |
| BmcAI | AGTACT | 1 cut(s) | 514 |
| Bme1390I | CCNGG | 1 cut(s) | 95 |
| BmeT110I | CYCGRG | 1 cut(s) | 697 |
| BmiI | GGNNCC | 2 cut(s) | 13, 1574 |
| BmrFI | CCNGG | 1 cut(s) | 95 |
| BmrI | ACTGGG | 1 cut(s) | 1374 |
| BmsI | GCATC | 1 cut(s) | 1272 |
| BmtI | GCTAGC | 1 cut(s) | 1415 |
| BmuI | ACTGGG | 1 cut(s) | 1374 |
| BpiI | GAAGAC | 2 cut(s) | 439, 1247 |
| BpmI | CTGGAG | 1 cut(s) | 1213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 417 |
| Bpu14I | TTCGAA | 2 cut(s) | 548, 1238 |
| BpuEI | CTTGAG | 1 cut(s) | 1314 |
| BsaAI | YACGTR | 1 cut(s) | 295 |
| BsaI | GGTCTC | 1 cut(s) | 859 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 93 |
| BsaWI | WCCGGW | 1 cut(s) | 1633 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 326, 356, 1186, 1216 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1223 |
| Bse118I | RCCGGY | 1 cut(s) | 1633 |
| Bse1I | ACTGG | 2 cut(s) | 542, 1380 |
| Bse3DI | GCAATG | 1 cut(s) | 624 |
| BseBI | CCWGG | 1 cut(s) | 95 |
| BseDI | CCNNGG | 2 cut(s) | 48, 93 |
| BseGI | GGATG | 3 cut(s) | 1054, 1537, 1720 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1223 |
| BseMI | GCAATG | 1 cut(s) | 624 |
| BseMII | CTCAG | 3 cut(s) | 431, 1457, 1606 |
| BseNI | ACTGG | 2 cut(s) | 542, 1380 |
| BseRI | GAGGAG | 3 cut(s) | 587, 698, 983 |
| BseXI | GCAGC | 3 cut(s) | 896, 976, 1597 |
| BseYI | CCCAGC | 3 cut(s) | 926, 1526, 1696 |
| BsgI | GTGCAG | 1 cut(s) | 903 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1498 |
| BshFI | GGCC | 3 cut(s) | 282, 824, 1597 |
| BshTI | ACCGGT | 1 cut(s) | 1633 |
| BsiEI | CGRYCG | 1 cut(s) | 1498 |
| BsiHKAI | GWGCWC | 3 cut(s) | 915, 1630, 1722 |
| BsiHKCI | CYCGRG | 1 cut(s) | 697 |
| BsiSI | CCGG | 1 cut(s) | 1634 |
| BslFI | GGGAC | 2 cut(s) | 1144, 1328 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1223 |
| BsmAI | GTCTC | 1 cut(s) | 859 |
| BsmFI | GGGAC | 2 cut(s) | 1144, 1328 |
| BsmI | GAATGC | 2 cut(s) | 556, 1093 |
| BsnI | GGCC | 3 cut(s) | 282, 824, 1597 |
| Bso31I | GGTCTC | 1 cut(s) | 859 |
| BsoBI | CYCGRG | 1 cut(s) | 697 |
| Bsp119I | TTCGAA | 2 cut(s) | 548, 1238 |
| Bsp1286I | GDGCHC | 3 cut(s) | 915, 1630, 1722 |
| Bsp143I | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| BspACI | CCGC | 2 cut(s) | 931, 1018 |
| BspANI | GGCC | 3 cut(s) | 282, 824, 1597 |
| BspCNI | CTCAG | 3 cut(s) | 430, 1456, 1605 |
| BspHI | TCATGA | 2 cut(s) | 265, 915 |
| BspLI | GGNNCC | 2 cut(s) | 13, 1574 |
| BspMAI | CTGCAG | 1 cut(s) | 651 |
| BspOI | GCTAGC | 1 cut(s) | 1415 |
| BspPI | GGATC | 1 cut(s) | 1029 |
| BspT104I | TTCGAA | 2 cut(s) | 548, 1238 |
| BspTNI | GGTCTC | 1 cut(s) | 859 |
| BsrDI | GCAATG | 1 cut(s) | 624 |
| BsrFI | RCCGGY | 1 cut(s) | 1633 |
| BsrI | ACTGG | 2 cut(s) | 542, 1380 |
| BssAI | RCCGGY | 1 cut(s) | 1633 |
| BssECI | CCNNGG | 2 cut(s) | 48, 93 |
| BssMI | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 4 cut(s) | 489, 788, 1246, 1319 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 623, 632 |
| BstBAI | YACGTR | 1 cut(s) | 295 |
| BstBI | TTCGAA | 2 cut(s) | 548, 1238 |
| BstC8I | GCNNGC | 2 cut(s) | 624, 1413 |
| BstDEI | CTNAG | 7 cut(s) | 277, 417, 459, 832, 964, 1443, 1592 |
| BstF5I | GGATG | 3 cut(s) | 1054, 1537, 1720 |
| BstH2I | RGCGCY | 1 cut(s) | 425 |
| BstHHI | GCGC | 2 cut(s) | 424, 1611 |
| BstKTI | GATC | 4 cut(s) | 217, 478, 1024, 1498 |
| BstMAI | GTCTC | 1 cut(s) | 859 |
| BstMBI | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| BstMCI | CGRYCG | 1 cut(s) | 1498 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 623, 632, 1594 |
| BstNI | CCWGG | 1 cut(s) | 95 |
| BstNSI | RCATGY | 4 cut(s) | 212, 635, 731, 1016 |
| BstSCI | CCNGG | 1 cut(s) | 93 |
| BstSFI | CTRYAG | 1 cut(s) | 647 |
| BstSNI | TACGTA | 1 cut(s) | 295 |
| BstV1I | GCAGC | 3 cut(s) | 896, 976, 1597 |
| BstV2I | GAAGAC | 2 cut(s) | 439, 1247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1387 |
| BsuRI | GGCC | 3 cut(s) | 282, 824, 1597 |
| BtsCI | GGATG | 3 cut(s) | 1054, 1537, 1720 |
| BtsI | GCAGTG | 1 cut(s) | 1623 |
| BtsIMutI | CAGTG | 4 cut(s) | 108, 494, 535, 1623 |
| Cac8I | GCNNGC | 2 cut(s) | 624, 1413 |
| CciI | TCATGA | 2 cut(s) | 265, 915 |
| CfoI | GCGC | 2 cut(s) | 424, 1611 |
| Cfr10I | RCCGGY | 1 cut(s) | 1633 |
| CseI | GACGC | 1 cut(s) | 141 |
| Csp6I | GTAC | 2 cut(s) | 513, 1424 |
| CspAI | ACCGGT | 1 cut(s) | 1633 |
| CviQI | GTAC | 2 cut(s) | 513, 1424 |
| DdeI | CTNAG | 7 cut(s) | 277, 417, 459, 832, 964, 1443, 1592 |
| DpnI | GATC | 4 cut(s) | 216, 477, 1023, 1497 |
| DpnII | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| EaeI | YGGCCR | 1 cut(s) | 822 |
| Ecl136II | GAGCTC | 2 cut(s) | 913, 1628 |
| Eco105I | TACGTA | 1 cut(s) | 295 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco147I | AGGCCT | 2 cut(s) | 282, 1597 |
| Eco24I | GRGCYC | 2 cut(s) | 915, 1630 |
| Eco31I | GGTCTC | 1 cut(s) | 859 |
| Eco53kI | GAGCTC | 2 cut(s) | 913, 1628 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| Eco88I | CYCGRG | 1 cut(s) | 697 |
| EcoICRI | GAGCTC | 2 cut(s) | 913, 1628 |
| EcoRI | GAATTC | 3 cut(s) | 544, 642, 773 |
| EcoRII | CCWGG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 637 |
| EcoT38I | GRGCYC | 2 cut(s) | 915, 1630 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaqI | GGGAC | 2 cut(s) | 1144, 1328 |
| FauI | CCCGC | 1 cut(s) | 1011 |
| FblI | GTMKAC | 2 cut(s) | 314, 1006 |
| Fnu4HI | GCNGC | 3 cut(s) | 885, 990, 1586 |
| FokI | GGATG | 3 cut(s) | 1061, 1544, 1727 |
| FriOI | GRGCYC | 2 cut(s) | 915, 1630 |
| Fsp4HI | GCNGC | 3 cut(s) | 885, 990, 1586 |
| FspBI | CTAG | 6 cut(s) | 387, 518, 768, 1101, 1412, 1599 |
| GlaI | GCGC | 2 cut(s) | 423, 1610 |
| GluI | GCNGC | 3 cut(s) | 885, 990, 1586 |
| GsaI | CCCAGC | 3 cut(s) | 930, 1530, 1700 |
| GsuI | CTGGAG | 1 cut(s) | 1213 |
| HaeII | RGCGCY | 1 cut(s) | 425 |
| HaeIII | GGCC | 3 cut(s) | 282, 824, 1597 |
| HapII | CCGG | 1 cut(s) | 1634 |
| HgaI | GACGC | 1 cut(s) | 141 |
| HhaI | GCGC | 2 cut(s) | 424, 1611 |
| Hin6I | GCGC | 2 cut(s) | 422, 1609 |
| HinP1I | GCGC | 2 cut(s) | 422, 1609 |
| HincII | GTYRAC | 1 cut(s) | 1007 |
| HindII | GTYRAC | 1 cut(s) | 1007 |
| HindIII | AAGCTT | 2 cut(s) | 717, 1148 |
| HinfI | GANTC | 7 cut(s) | 107, 260, 652, 700, 1003, 1256, 1507 |
| HpaII | CCGG | 1 cut(s) | 1634 |
| HphI | GGTGA | 1 cut(s) | 64 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 55, 69, 315, 1007 |
| Hpy188I | TCNGA | 3 cut(s) | 567, 1500, 1686 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 55, 69, 315, 1007 |
| Hpy99I | CGWCG | 1 cut(s) | 1011 |
| HpyAV | CCTTC | 6 cut(s) | 293, 385, 666, 1039, 1227, 1477 |
| HpyCH4III | ACNGT | 4 cut(s) | 489, 788, 1246, 1319 |
| HpyCH4IV | ACGT | 3 cut(s) | 294, 311, 1656 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 623, 632, 1594 |
| HpyF3I | CTNAG | 7 cut(s) | 277, 417, 459, 832, 964, 1443, 1592 |
| HpySE526I | ACGT | 3 cut(s) | 294, 311, 1656 |
| HspAI | GCGC | 2 cut(s) | 422, 1609 |
| Kzo9I | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| LmnI | GCTCC | 3 cut(s) | 49, 1125, 1344 |
| Lsp1109I | GCAGC | 3 cut(s) | 896, 976, 1597 |
| LweI | GCATC | 1 cut(s) | 1272 |
| MaeI | CTAG | 6 cut(s) | 387, 518, 768, 1101, 1412, 1599 |
| MaeII | ACGT | 3 cut(s) | 294, 311, 1656 |
| MaeIII | GTNAC | 4 cut(s) | 470, 701, 740, 1382 |
| MalI | GATC | 4 cut(s) | 216, 477, 1023, 1497 |
| MboI | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| MboII | GAAGA | 8 cut(s) | 316, 439, 553, 820, 1089, 1156, 1205, 1252 |
| MfeI | CAATTG | 1 cut(s) | 1125 |
| MhlI | GDGCHC | 3 cut(s) | 915, 1630, 1722 |
| MlsI | TGGCCA | 1 cut(s) | 824 |
| MluNI | TGGCCA | 1 cut(s) | 824 |
| MlyI | GAGTC | 3 cut(s) | 709, 1012, 1250 |
| MmeI | TCCRAC | 5 cut(s) | 114, 475, 627, 1013, 1233 |
| Mox20I | TGGCCA | 1 cut(s) | 824 |
| Mph1103I | ATGCAT | 1 cut(s) | 637 |
| MscI | TGGCCA | 1 cut(s) | 824 |
| MseI | TTAA | 6 cut(s) | 330, 401, 609, 950, 1439, 1710 |
| MslI | CAYNNNNRTG | 3 cut(s) | 678, 1266, 1347 |
| Msp20I | TGGCCA | 1 cut(s) | 824 |
| MspA1I | CMGCKG | 1 cut(s) | 1526 |
| MspI | CCGG | 1 cut(s) | 1634 |
| MspR9I | CCNGG | 1 cut(s) | 95 |
| MunI | CAATTG | 1 cut(s) | 1125 |
| Mva1269I | GAATGC | 2 cut(s) | 556, 1093 |
| MvaI | CCWGG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 623, 632, 1594 |
| NdeII | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| NheI | GCTAGC | 1 cut(s) | 1411 |
| NlaIV | GGNNCC | 2 cut(s) | 13, 1574 |
| NmeAIII | GCCGAG | 1 cut(s) | 1592 |
| NmuCI | GTSAC | 2 cut(s) | 470, 701 |
| NsiI | ATGCAT | 1 cut(s) | 637 |
| NspI | RCATGY | 4 cut(s) | 212, 635, 731, 1016 |
| NspV | TTCGAA | 2 cut(s) | 548, 1238 |
| PagI | TCATGA | 2 cut(s) | 265, 915 |
| PceI | AGGCCT | 2 cut(s) | 282, 1597 |
| PctI | GAATGC | 2 cut(s) | 556, 1093 |
| PfeI | GAWTC | 4 cut(s) | 107, 260, 652, 1507 |
| PflFI | GACNNNGTC | 1 cut(s) | 1319 |
| PinAI | ACCGGT | 1 cut(s) | 1633 |
| PkrI | GCNGC | 3 cut(s) | 886, 991, 1587 |
| Ple19I | CGATCG | 1 cut(s) | 1498 |
| PleI | GAGTC | 3 cut(s) | 708, 1011, 1250 |
| PpsI | GAGTC | 3 cut(s) | 708, 1011, 1250 |
| Ppu21I | YACGTR | 1 cut(s) | 295 |
| PsiI | TTATAA | 1 cut(s) | 1374 |
| Psp124BI | GAGCTC | 2 cut(s) | 915, 1630 |
| Psp1406I | AACGTT | 1 cut(s) | 1656 |
| Psp6I | CCWGG | 1 cut(s) | 93 |
| PspFI | CCCAGC | 3 cut(s) | 926, 1526, 1696 |
| PspGI | CCWGG | 1 cut(s) | 93 |
| PspN4I | GGNNCC | 2 cut(s) | 13, 1574 |
| PstI | CTGCAG | 1 cut(s) | 651 |
| PsyI | GACNNNGTC | 1 cut(s) | 1319 |
| PvuI | CGATCG | 1 cut(s) | 1498 |
| PvuII | CAGCTG | 1 cut(s) | 1526 |
| RsaI | GTAC | 2 cut(s) | 514, 1425 |
| RsaNI | GTAC | 2 cut(s) | 513, 1424 |
| RseI | CAYNNNNRTG | 3 cut(s) | 678, 1266, 1347 |
| SacI | GAGCTC | 2 cut(s) | 915, 1630 |
| SalI | GTCGAC | 1 cut(s) | 1005 |
| SaqAI | TTAA | 6 cut(s) | 330, 401, 609, 950, 1439, 1710 |
| SatI | GCNGC | 3 cut(s) | 885, 990, 1586 |
| Sau3AI | GATC | 4 cut(s) | 214, 475, 1021, 1495 |
| ScaI | AGTACT | 1 cut(s) | 514 |
| SchI | GAGTC | 3 cut(s) | 709, 1012, 1250 |
| ScrFI | CCNGG | 1 cut(s) | 95 |
| SduI | GDGCHC | 3 cut(s) | 915, 1630, 1722 |
| SfaNI | GCATC | 1 cut(s) | 1272 |
| SfcI | CTRYAG | 1 cut(s) | 647 |
| SfuI | TTCGAA | 2 cut(s) | 548, 1238 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 678, 1266, 1347 |
| SmlI | CTYRAG | 1 cut(s) | 1329 |
| SmoI | CTYRAG | 1 cut(s) | 1329 |
| SnaBI | TACGTA | 1 cut(s) | 295 |
| SseBI | AGGCCT | 2 cut(s) | 282, 1597 |
| SsiI | CCGC | 2 cut(s) | 931, 1018 |
| SspMI | CTAG | 6 cut(s) | 387, 518, 768, 1101, 1412, 1599 |
| SstI | GAGCTC | 2 cut(s) | 915, 1630 |
| StuI | AGGCCT | 2 cut(s) | 282, 1597 |
| StyD4I | CCNGG | 1 cut(s) | 93 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 4 cut(s) | 489, 788, 1246, 1319 |
| TaiI | ACGT | 3 cut(s) | 297, 314, 1659 |
| TaqI | TCGA | 7 cut(s) | 213, 548, 1006, 1043, 1078, 1238, 1360 |
| TatI | WGTACW | 1 cut(s) | 512 |
| TfiI | GAWTC | 4 cut(s) | 107, 260, 652, 1507 |
| Tru1I | TTAA | 6 cut(s) | 330, 401, 609, 950, 1439, 1710 |
| Tru9I | TTAA | 6 cut(s) | 330, 401, 609, 950, 1439, 1710 |
| TscAI | CASTG | 4 cut(s) | 108, 494, 542, 1623 |
| TseFI | GTSAC | 2 cut(s) | 470, 701 |
| TseI | GCWGC | 3 cut(s) | 884, 989, 1585 |
| Tsp45I | GTSAC | 2 cut(s) | 470, 701 |
| TspDTI | ATGAA | 4 cut(s) | 158, 282, 648, 1661 |
| TspGWI | ACGGA | 3 cut(s) | 86, 581, 987 |
| TspRI | CASTG | 4 cut(s) | 108, 494, 542, 1623 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1319 |
| XapI | RAATTY | 5 cut(s) | 544, 642, 773, 874, 1565 |
| XbaI | TCTAGA | 1 cut(s) | 517 |
| XceI | RCATGY | 4 cut(s) | 212, 635, 731, 1016 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 184 |
| XmiI | GTMKAC | 2 cut(s) | 314, 1006 |
| XspI | CTAG | 6 cut(s) | 387, 518, 768, 1101, 1412, 1599 |
| ZrmI | AGTACT | 1 cut(s) | 514 |
| Zsp2I | ATGCAT | 1 cut(s) | 637 |