Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 129 |
| Acc36I | ACCTGC | 1 cut(s) | 104 |
| AccB1I | GGYRCC | 1 cut(s) | 304 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 764 |
| AccI | GTMKAC | 1 cut(s) | 467 |
| AciI | CCGC | 1 cut(s) | 308 |
| AclI | AACGTT | 1 cut(s) | 937 |
| AcsI | RAATTY | 3 cut(s) | 80, 381, 1163 |
| AcuI | CTGAAG | 1 cut(s) | 794 |
| AdeI | CACNNNGTG | 1 cut(s) | 764 |
| AfaI | GTAC | 6 cut(s) | 10, 161, 200, 397, 1027, 1142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 764 |
| AgsI | TTSAA | 9 cut(s) | 90, 143, 283, 386, 448, 658, 679, 851, 971 |
| AluBI | AGCT | 3 cut(s) | 239, 713, 1179 |
| AluI | AGCT | 3 cut(s) | 239, 713, 1179 |
| Alw21I | GWGCWC | 2 cut(s) | 266, 1181 |
| Alw26I | GTCTC | 2 cut(s) | 328, 422 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 716 |
| Ama87I | CYCGRG | 1 cut(s) | 129 |
| ApeKI | GCWGC | 2 cut(s) | 504, 665 |
| ApoI | RAATTY | 3 cut(s) | 80, 381, 1163 |
| AspLEI | GCGC | 1 cut(s) | 573 |
| AspS9I | GGNCC | 1 cut(s) | 220 |
| AsuC2I | CCSGG | 1 cut(s) | 516 |
| AsuHPI | GGTGA | 5 cut(s) | 146, 199, 808, 866, 1007 |
| AvaI | CYCGRG | 1 cut(s) | 129 |
| AvaII | GGWCC | 1 cut(s) | 220 |
| BanI | GGYRCC | 1 cut(s) | 304 |
| BanII | GRGCYC | 1 cut(s) | 1181 |
| BbsI | GAAGAC | 1 cut(s) | 959 |
| Bbv12I | GWGCWC | 2 cut(s) | 266, 1181 |
| BbvI | GCAGC | 2 cut(s) | 516, 652 |
| BccI | CCATC | 3 cut(s) | 548, 714, 782 |
| BceAI | ACGGC | 1 cut(s) | 447 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BcnI | CCSGG | 1 cut(s) | 516 |
| BcoDI | GTCTC | 2 cut(s) | 328, 422 |
| BfmI | CTRYAG | 2 cut(s) | 872, 979 |
| BfuAI | ACCTGC | 1 cut(s) | 104 |
| BisI | GCNGC | 3 cut(s) | 308, 505, 666 |
| BlsI | GCNGC | 3 cut(s) | 309, 506, 667 |
| Bme1390I | CCNGG | 1 cut(s) | 516 |
| Bme18I | GGWCC | 1 cut(s) | 220 |
| BmeT110I | CYCGRG | 1 cut(s) | 129 |
| BmgT120I | GGNCC | 1 cut(s) | 220 |
| BmiI | GGNNCC | 2 cut(s) | 221, 306 |
| BmrFI | CCNGG | 1 cut(s) | 516 |
| BpiI | GAAGAC | 1 cut(s) | 959 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 89, 121, 356, 388 |
| BpuMI | CCSGG | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 2 cut(s) | 515, 1111 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 419, 449, 830, 860 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 764 |
| BseDI | CCNNGG | 2 cut(s) | 515, 1111 |
| BseGI | GGATG | 3 cut(s) | 706, 1028, 1045 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 764 |
| BseMII | CTCAG | 2 cut(s) | 411, 897 |
| BseRI | GAGGAG | 2 cut(s) | 110, 851 |
| BseXI | GCAGC | 2 cut(s) | 516, 652 |
| BsgI | GTGCAG | 2 cut(s) | 523, 882 |
| BshNI | GGYRCC | 1 cut(s) | 304 |
| BsiHKAI | GWGCWC | 2 cut(s) | 266, 1181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 129 |
| BsiSI | CCGG | 1 cut(s) | 515 |
| BslFI | GGGAC | 2 cut(s) | 233, 1114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 764 |
| BsmAI | GTCTC | 2 cut(s) | 328, 422 |
| BsmBI | CGTCTC | 1 cut(s) | 422 |
| BsmFI | GGGAC | 2 cut(s) | 233, 1114 |
| BsoBI | CYCGRG | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 2 cut(s) | 266, 1181 |
| Bsp143I | GATC | 2 cut(s) | 40, 320 |
| BspACI | CCGC | 1 cut(s) | 308 |
| BspCNI | CTCAG | 2 cut(s) | 412, 898 |
| BspLI | GGNNCC | 2 cut(s) | 221, 306 |
| BspMI | ACCTGC | 1 cut(s) | 104 |
| BspT107I | GGYRCC | 1 cut(s) | 304 |
| BssECI | CCNNGG | 2 cut(s) | 515, 1111 |
| BssMI | GATC | 2 cut(s) | 40, 320 |
| Bst4CI | ACNGT | 6 cut(s) | 25, 404, 501, 718, 860, 1100 |
| Bst6I | CTCTTC | 2 cut(s) | 371, 1150 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 923 |
| BstC8I | GCNNGC | 1 cut(s) | 297 |
| BstDEI | CTNAG | 3 cut(s) | 420, 586, 906 |
| BstF5I | GGATG | 3 cut(s) | 706, 1028, 1045 |
| BstHHI | GCGC | 1 cut(s) | 573 |
| BstKTI | GATC | 2 cut(s) | 43, 323 |
| BstMAI | GTCTC | 2 cut(s) | 328, 422 |
| BstMBI | GATC | 2 cut(s) | 40, 320 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 671, 923, 1019 |
| BstNSI | RCATGY | 1 cut(s) | 299 |
| BstSCI | CCNGG | 1 cut(s) | 514 |
| BstSFI | CTRYAG | 2 cut(s) | 872, 979 |
| BstV1I | GCAGC | 2 cut(s) | 516, 652 |
| BstV2I | GAAGAC | 1 cut(s) | 959 |
| BtsCI | GGATG | 3 cut(s) | 706, 1028, 1045 |
| BveI | ACCTGC | 1 cut(s) | 104 |
| Cac8I | GCNNGC | 1 cut(s) | 297 |
| CaiI | CAGNNNCTG | 1 cut(s) | 716 |
| CfoI | GCGC | 1 cut(s) | 573 |
| Cfr13I | GGNCC | 1 cut(s) | 220 |
| Csp6I | GTAC | 6 cut(s) | 9, 160, 199, 396, 1026, 1141 |
| CviAII | CATG | 4 cut(s) | 18, 296, 661, 1076 |
| CviQI | GTAC | 6 cut(s) | 9, 160, 199, 396, 1026, 1141 |
| DdeI | CTNAG | 3 cut(s) | 420, 586, 906 |
| DpnI | GATC | 2 cut(s) | 42, 322 |
| DpnII | GATC | 2 cut(s) | 40, 320 |
| DraI | TTTAAA | 1 cut(s) | 1155 |
| DraIII | CACNNNGTG | 1 cut(s) | 764 |
| Eam1104I | CTCTTC | 2 cut(s) | 371, 1150 |
| EarI | CTCTTC | 2 cut(s) | 371, 1150 |
| Ecl136II | GAGCTC | 1 cut(s) | 1179 |
| Eco24I | GRGCYC | 1 cut(s) | 1181 |
| Eco32I | GATATC | 1 cut(s) | 1069 |
| Eco47I | GGWCC | 1 cut(s) | 220 |
| Eco53kI | GAGCTC | 1 cut(s) | 1179 |
| Eco57I | CTGAAG | 1 cut(s) | 794 |
| Eco88I | CYCGRG | 1 cut(s) | 129 |
| EcoICRI | GAGCTC | 1 cut(s) | 1179 |
| EcoRI | GAATTC | 1 cut(s) | 381 |
| EcoRV | GATATC | 1 cut(s) | 1069 |
| EcoT38I | GRGCYC | 1 cut(s) | 1181 |
| Esp3I | CGTCTC | 1 cut(s) | 422 |
| FaeI | CATG | 4 cut(s) | 21, 299, 664, 1079 |
| FaqI | GGGAC | 2 cut(s) | 233, 1114 |
| FatI | CATG | 4 cut(s) | 17, 295, 660, 1075 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| FblI | GTMKAC | 1 cut(s) | 467 |
| Fnu4HI | GCNGC | 3 cut(s) | 308, 505, 666 |
| FokI | GGATG | 3 cut(s) | 693, 1015, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 1181 |
| Fsp4HI | GCNGC | 3 cut(s) | 308, 505, 666 |
| GlaI | GCGC | 1 cut(s) | 572 |
| GluI | GCNGC | 3 cut(s) | 308, 505, 666 |
| HapII | CCGG | 1 cut(s) | 515 |
| HhaI | GCGC | 1 cut(s) | 573 |
| Hin1II | CATG | 4 cut(s) | 21, 299, 664, 1079 |
| Hin6I | GCGC | 1 cut(s) | 571 |
| HinP1I | GCGC | 1 cut(s) | 571 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HinfI | GANTC | 2 cut(s) | 416, 1008 |
| HpaII | CCGG | 1 cut(s) | 515 |
| HphI | GGTGA | 5 cut(s) | 146, 199, 808, 866, 1007 |
| Hpy166II | GTNNAC | 5 cut(s) | 468, 721, 758, 895, 935 |
| Hpy188I | TCNGA | 4 cut(s) | 421, 907, 1112, 1191 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 143, 373, 1064 |
| Hpy8I | GTNNAC | 5 cut(s) | 468, 721, 758, 895, 935 |
| HpyAV | CCTTC | 4 cut(s) | 664, 769, 845, 1167 |
| HpyCH4III | ACNGT | 6 cut(s) | 25, 404, 501, 718, 860, 1100 |
| HpyCH4IV | ACGT | 1 cut(s) | 937 |
| HpyCH4V | TGCA | 9 cut(s) | 113, 299, 342, 504, 863, 917, 926, 950, 1003 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 671, 923, 1019 |
| HpyF3I | CTNAG | 3 cut(s) | 420, 586, 906 |
| HpySE526I | ACGT | 1 cut(s) | 937 |
| Hsp92II | CATG | 4 cut(s) | 21, 299, 664, 1079 |
| HspAI | GCGC | 1 cut(s) | 571 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| Kzo9I | GATC | 2 cut(s) | 40, 320 |
| LmnI | GCTCC | 3 cut(s) | 478, 1176, 1184 |
| LpnPI | CCDG | 7 cut(s) | 29, 99, 158, 528, 723, 860, 1077 |
| Lsp1109I | GCAGC | 2 cut(s) | 516, 652 |
| MaeII | ACGT | 1 cut(s) | 937 |
| MaeIII | GTNAC | 5 cut(s) | 60, 413, 435, 647, 854 |
| MalI | GATC | 2 cut(s) | 42, 322 |
| MboI | GATC | 2 cut(s) | 40, 320 |
| MboII | GAAGA | 4 cut(s) | 234, 388, 959, 1137 |
| MfeI | CAATTG | 1 cut(s) | 108 |
| MhlI | GDGCHC | 2 cut(s) | 266, 1181 |
| MluCI | AATT | 9 cut(s) | 80, 108, 283, 381, 831, 867, 918, 955, 1163 |
| MlyI | GAGTC | 2 cut(s) | 410, 1002 |
| MmeI | TCCRAC | 1 cut(s) | 1017 |
| MseI | TTAA | 5 cut(s) | 74, 152, 954, 1089, 1154 |
| MslI | CAYNNNNRTG | 1 cut(s) | 328 |
| MspI | CCGG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 1 cut(s) | 516 |
| MunI | CAATTG | 1 cut(s) | 108 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 671, 923, 1019 |
| NciI | CCSGG | 1 cut(s) | 516 |
| NdeII | GATC | 2 cut(s) | 40, 320 |
| NlaIII | CATG | 4 cut(s) | 21, 299, 664, 1079 |
| NlaIV | GGNNCC | 2 cut(s) | 221, 306 |
| NmuCI | GTSAC | 3 cut(s) | 413, 647, 854 |
| NspI | RCATGY | 1 cut(s) | 299 |
| PaeI | GCATGC | 1 cut(s) | 299 |
| PaeR7I | CTCGAG | 1 cut(s) | 129 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 764 |
| PkrI | GCNGC | 3 cut(s) | 309, 506, 667 |
| PleI | GAGTC | 2 cut(s) | 410, 1002 |
| PpsI | GAGTC | 2 cut(s) | 410, 1002 |
| Psp124BI | GAGCTC | 1 cut(s) | 1181 |
| Psp1406I | AACGTT | 1 cut(s) | 937 |
| PspN4I | GGNNCC | 2 cut(s) | 221, 306 |
| PspPI | GGNCC | 1 cut(s) | 220 |
| PspXI | VCTCGAGB | 1 cut(s) | 129 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 804, 836 |
| PstNI | CAGNNNCTG | 1 cut(s) | 716 |
| RsaI | GTAC | 6 cut(s) | 10, 161, 200, 397, 1027, 1142 |
| RsaNI | GTAC | 6 cut(s) | 9, 160, 199, 396, 1026, 1141 |
| RseI | CAYNNNNRTG | 1 cut(s) | 328 |
| SacI | GAGCTC | 1 cut(s) | 1181 |
| SaqAI | TTAA | 5 cut(s) | 74, 152, 954, 1089, 1154 |
| SatI | GCNGC | 3 cut(s) | 308, 505, 666 |
| Sau3AI | GATC | 2 cut(s) | 40, 320 |
| Sau96I | GGNCC | 1 cut(s) | 220 |
| SchI | GAGTC | 2 cut(s) | 410, 1002 |
| ScrFI | CCNGG | 1 cut(s) | 516 |
| SduI | GDGCHC | 2 cut(s) | 266, 1181 |
| SfcI | CTRYAG | 2 cut(s) | 872, 979 |
| Sfr274I | CTCGAG | 1 cut(s) | 129 |
| SinI | GGWCC | 1 cut(s) | 220 |
| SlaI | CTCGAG | 1 cut(s) | 129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 328 |
| SmlI | CTYRAG | 1 cut(s) | 129 |
| SmoI | CTYRAG | 1 cut(s) | 129 |
| SphI | GCATGC | 1 cut(s) | 299 |
| Sse9I | AATT | 9 cut(s) | 80, 108, 283, 381, 831, 867, 918, 955, 1163 |
| SsiI | CCGC | 1 cut(s) | 308 |
| SstI | GAGCTC | 1 cut(s) | 1181 |
| StyD4I | CCNGG | 1 cut(s) | 514 |
| TaaI | ACNGT | 6 cut(s) | 25, 404, 501, 718, 860, 1100 |
| TaiI | ACGT | 1 cut(s) | 940 |
| TaqI | TCGA | 2 cut(s) | 130, 374 |
| TasI | AATT | 9 cut(s) | 80, 108, 283, 381, 831, 867, 918, 955, 1163 |
| TatI | WGTACW | 3 cut(s) | 395, 1025, 1140 |
| TauI | GCSGC | 1 cut(s) | 310 |
| Tru1I | TTAA | 5 cut(s) | 74, 152, 954, 1089, 1154 |
| Tru9I | TTAA | 5 cut(s) | 74, 152, 954, 1089, 1154 |
| TseFI | GTSAC | 3 cut(s) | 413, 647, 854 |
| TseI | GCWGC | 2 cut(s) | 504, 665 |
| Tsp45I | GTSAC | 3 cut(s) | 413, 647, 854 |
| TspDTI | ATGAA | 3 cut(s) | 93, 949, 1176 |
| TspGWI | ACGGA | 1 cut(s) | 1021 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 1 cut(s) | 220 |
| XapI | RAATTY | 3 cut(s) | 80, 381, 1163 |
| XceI | RCATGY | 1 cut(s) | 299 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 744 |
| XhoI | CTCGAG | 1 cut(s) | 129 |
| XmiI | GTMKAC | 1 cut(s) | 467 |