Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2, 199 |
| Acc36I | ACCTGC | 2 cut(s) | 2, 199 |
| AccI | GTMKAC | 1 cut(s) | 502 |
| AciI | CCGC | 1 cut(s) | 581 |
| AclWI | GGATC | 3 cut(s) | 64, 77, 498 |
| AfaI | GTAC | 2 cut(s) | 18, 409 |
| AgsI | TTSAA | 2 cut(s) | 122, 367 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 1 cut(s) | 679 |
| AluI | AGCT | 1 cut(s) | 679 |
| Alw26I | GTCTC | 2 cut(s) | 346, 702 |
| AlwI | GGATC | 3 cut(s) | 64, 77, 498 |
| Ama87I | CYCGRG | 1 cut(s) | 312 |
| AoxI | GGCC | 1 cut(s) | 262 |
| ApaI | GGGCCC | 1 cut(s) | 266 |
| ApeKI | GCWGC | 2 cut(s) | 170, 658 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 278, 333 |
| AspS9I | GGNCC | 2 cut(s) | 262, 263 |
| AsuHPI | GGTGA | 2 cut(s) | 44, 58 |
| AvaI | CYCGRG | 1 cut(s) | 312 |
| BaeGI | GKGCMC | 1 cut(s) | 266 |
| BamHI | GGATCC | 1 cut(s) | 69 |
| BanII | GRGCYC | 1 cut(s) | 266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 284, 316 |
| BbsI | GAAGAC | 2 cut(s) | 299, 531 |
| BbvI | GCAGC | 2 cut(s) | 182, 670 |
| BccI | CCATC | 2 cut(s) | 29, 679 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BcoDI | GTCTC | 2 cut(s) | 346, 702 |
| BfaI | CTAG | 4 cut(s) | 153, 326, 456, 721 |
| BfmI | CTRYAG | 2 cut(s) | 168, 656 |
| BfuAI | ACCTGC | 2 cut(s) | 2, 199 |
| BisI | GCNGC | 2 cut(s) | 171, 659 |
| BlsI | GCNGC | 2 cut(s) | 172, 660 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| BmeT110I | CYCGRG | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 2 cut(s) | 262, 263 |
| BmiI | GGNNCC | 4 cut(s) | 40, 71, 263, 264 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BpiI | GAAGAC | 2 cut(s) | 299, 531 |
| BsaI | GGTCTC | 1 cut(s) | 702 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 16, 46, 236, 266, 421, 451 |
| Bse1I | ACTGG | 2 cut(s) | 308, 554 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseGI | GGATG | 3 cut(s) | 168, 219, 639 |
| BseNI | ACTGG | 2 cut(s) | 308, 554 |
| BseSI | GKGCMC | 1 cut(s) | 266 |
| BseXI | GCAGC | 2 cut(s) | 182, 670 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 264 |
| BsiHKCI | CYCGRG | 1 cut(s) | 312 |
| BsmAI | GTCTC | 2 cut(s) | 346, 702 |
| BsnI | GGCC | 1 cut(s) | 264 |
| Bso31I | GGTCTC | 1 cut(s) | 702 |
| BsoBI | CYCGRG | 1 cut(s) | 312 |
| Bsp120I | GGGCCC | 1 cut(s) | 262 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| Bsp1407I | TGTACA | 1 cut(s) | 16 |
| Bsp143I | GATC | 2 cut(s) | 69, 490 |
| BspACI | CCGC | 1 cut(s) | 581 |
| BspANI | GGCC | 1 cut(s) | 264 |
| BspLI | GGNNCC | 4 cut(s) | 40, 71, 263, 264 |
| BspMAI | CTGCAG | 2 cut(s) | 172, 660 |
| BspMI | ACCTGC | 2 cut(s) | 2, 199 |
| BspPI | GGATC | 3 cut(s) | 64, 77, 498 |
| BspTNI | GGTCTC | 1 cut(s) | 702 |
| BsrGI | TGTACA | 1 cut(s) | 16 |
| BsrI | ACTGG | 2 cut(s) | 308, 554 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 2 cut(s) | 69, 490 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 4 cut(s) | 80, 412, 447, 507 |
| BstAUI | TGTACA | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 1 cut(s) | 180 |
| BstF5I | GGATG | 3 cut(s) | 168, 219, 639 |
| BstKTI | GATC | 2 cut(s) | 72, 493 |
| BstMAI | GTCTC | 2 cut(s) | 346, 702 |
| BstMBI | GATC | 2 cut(s) | 69, 490 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 179 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstNSI | RCATGY | 2 cut(s) | 182, 438 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSFI | CTRYAG | 2 cut(s) | 168, 656 |
| BstSLI | GKGCMC | 1 cut(s) | 266 |
| BstV1I | GCAGC | 2 cut(s) | 182, 670 |
| BstV2I | GAAGAC | 2 cut(s) | 299, 531 |
| BstX2I | RGATCY | 2 cut(s) | 69, 490 |
| BstYI | RGATCY | 2 cut(s) | 69, 490 |
| BsuRI | GGCC | 1 cut(s) | 264 |
| BtsCI | GGATG | 3 cut(s) | 168, 219, 639 |
| BveI | ACCTGC | 2 cut(s) | 2, 199 |
| Cac8I | GCNNGC | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 2 cut(s) | 262, 263 |
| Csp6I | GTAC | 2 cut(s) | 17, 408 |
| CviAII | CATG | 5 cut(s) | 59, 175, 179, 435, 536 |
| CviJI | RGCY | 6 cut(s) | 173, 203, 264, 279, 317, 679 |
| CviKI_1 | RGCY | 6 cut(s) | 173, 203, 264, 279, 317, 679 |
| CviQI | GTAC | 2 cut(s) | 17, 408 |
| DpnI | GATC | 2 cut(s) | 71, 492 |
| DpnII | GATC | 2 cut(s) | 69, 490 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| Eco24I | GRGCYC | 1 cut(s) | 266 |
| Eco31I | GGTCTC | 1 cut(s) | 702 |
| Eco88I | CYCGRG | 1 cut(s) | 312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 262 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| EcoT22I | ATGCAT | 2 cut(s) | 180, 221 |
| EcoT38I | GRGCYC | 1 cut(s) | 266 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| FaeI | CATG | 5 cut(s) | 62, 178, 182, 438, 539 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 263, 295 |
| FatI | CATG | 5 cut(s) | 58, 174, 178, 434, 535 |
| FauI | CCCGC | 1 cut(s) | 588 |
| FblI | GTMKAC | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 659 |
| FokI | GGATG | 3 cut(s) | 175, 206, 646 |
| FriOI | GRGCYC | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 659 |
| FspBI | CTAG | 4 cut(s) | 153, 326, 456, 721 |
| GluI | GCNGC | 2 cut(s) | 171, 659 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeIII | GGCC | 1 cut(s) | 264 |
| Hin1II | CATG | 5 cut(s) | 62, 178, 182, 438, 539 |
| HincII | GTYRAC | 1 cut(s) | 83 |
| HindII | GTYRAC | 1 cut(s) | 83 |
| HindIII | AAGCTT | 1 cut(s) | 677 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HphI | GGTGA | 2 cut(s) | 44, 58 |
| Hpy166II | GTNNAC | 4 cut(s) | 17, 83, 443, 503 |
| Hpy188I | TCNGA | 1 cut(s) | 133 |
| Hpy188III | TCNNGA | 1 cut(s) | 376 |
| Hpy8I | GTNNAC | 4 cut(s) | 17, 83, 443, 503 |
| HpyCH4III | ACNGT | 4 cut(s) | 80, 412, 447, 507 |
| HpyCH4V | TGCA | 6 cut(s) | 170, 178, 219, 512, 546, 658 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 179 |
| Hsp92II | CATG | 5 cut(s) | 62, 178, 182, 438, 539 |
| Kzo9I | GATC | 2 cut(s) | 69, 490 |
| LpnPI | CCDG | 9 cut(s) | 194, 218, 279, 289, 361, 390, 417, 567, 697 |
| Lsp1109I | GCAGC | 2 cut(s) | 182, 670 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 4 cut(s) | 153, 326, 456, 721 |
| MaeIII | GTNAC | 2 cut(s) | 447, 479 |
| MalI | GATC | 2 cut(s) | 71, 492 |
| MboI | GATC | 2 cut(s) | 69, 490 |
| MboII | GAAGA | 3 cut(s) | 304, 536, 718 |
| MflI | RGATCY | 2 cut(s) | 69, 490 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MluCI | AATT | 5 cut(s) | 86, 109, 464, 529, 589 |
| MmeI | TCCRAC | 1 cut(s) | 599 |
| MnlI | CCTC | 3 cut(s) | 18, 234, 238 |
| Mph1103I | ATGCAT | 2 cut(s) | 180, 221 |
| MroXI | GAANNNNTTC | 2 cut(s) | 278, 333 |
| MseI | TTAA | 3 cut(s) | 92, 588, 651 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 69, 490 |
| NlaIII | CATG | 5 cut(s) | 62, 178, 182, 438, 539 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 71, 263, 264 |
| NsiI | ATGCAT | 2 cut(s) | 180, 221 |
| NspI | RCATGY | 2 cut(s) | 182, 438 |
| PaeI | GCATGC | 1 cut(s) | 182 |
| PaqCI | CACCTGC | 2 cut(s) | 2, 199 |
| PdmI | GAANNNNTTC | 2 cut(s) | 278, 333 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PkrI | GCNGC | 2 cut(s) | 172, 660 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 71, 263, 264 |
| PspOMI | GGGCCC | 1 cut(s) | 262 |
| PspPI | GGNCC | 2 cut(s) | 262, 263 |
| PstI | CTGCAG | 2 cut(s) | 172, 660 |
| PsuI | RGATCY | 2 cut(s) | 69, 490 |
| RsaI | GTAC | 2 cut(s) | 18, 409 |
| RsaNI | GTAC | 2 cut(s) | 17, 408 |
| SaqAI | TTAA | 3 cut(s) | 92, 588, 651 |
| SatI | GCNGC | 2 cut(s) | 171, 659 |
| Sau3AI | GATC | 2 cut(s) | 69, 490 |
| Sau96I | GGNCC | 2 cut(s) | 262, 263 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SetI | ASST | 9 cut(s) | 16, 34, 48, 138, 213, 409, 454, 481, 681 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 2 cut(s) | 168, 656 |
| SphI | GCATGC | 1 cut(s) | 182 |
| Sse9I | AATT | 5 cut(s) | 86, 109, 464, 529, 589 |
| SsiI | CCGC | 1 cut(s) | 581 |
| SspI | AATATT | 2 cut(s) | 52, 616 |
| SspMI | CTAG | 4 cut(s) | 153, 326, 456, 721 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 4 cut(s) | 80, 412, 447, 507 |
| TaqI | TCGA | 1 cut(s) | 566 |
| TasI | AATT | 5 cut(s) | 86, 109, 464, 529, 589 |
| TatI | WGTACW | 1 cut(s) | 16 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 3 cut(s) | 92, 588, 651 |
| Tru9I | TTAA | 3 cut(s) | 92, 588, 651 |
| TseI | GCWGC | 2 cut(s) | 170, 658 |
| TspDTI | ATGAA | 1 cut(s) | 537 |
| XceI | RCATGY | 2 cut(s) | 182, 438 |
| XmiI | GTMKAC | 1 cut(s) | 502 |
| XmnI | GAANNNNTTC | 2 cut(s) | 278, 333 |
| XspI | CTAG | 4 cut(s) | 153, 326, 456, 721 |
| Zsp2I | ATGCAT | 2 cut(s) | 180, 221 |