Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 337 |
| AciI | CCGC | 1 cut(s) | 161 |
| AclI | AACGTT | 1 cut(s) | 324 |
| AcoI | YGGCCR | 1 cut(s) | 240 |
| AcsI | RAATTY | 1 cut(s) | 199 |
| AfaI | GTAC | 7 cut(s) | 19, 83, 372, 501, 519, 545, 736 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 337, 380, 432 |
| AgsI | TTSAA | 4 cut(s) | 157, 191, 463, 598 |
| AjnI | CCWGG | 1 cut(s) | 374 |
| AluBI | AGCT | 7 cut(s) | 63, 91, 173, 251, 269, 571, 714 |
| AluI | AGCT | 7 cut(s) | 63, 91, 173, 251, 269, 571, 714 |
| Alw26I | GTCTC | 1 cut(s) | 378 |
| Ama87I | CYCGRG | 1 cut(s) | 232 |
| AoxI | GGCC | 2 cut(s) | 240, 488 |
| ApeKI | GCWGC | 4 cut(s) | 88, 100, 248, 295 |
| ApoI | RAATTY | 1 cut(s) | 199 |
| AspS9I | GGNCC | 1 cut(s) | 489 |
| AsuHPI | GGTGA | 1 cut(s) | 721 |
| AsuII | TTCGAA | 1 cut(s) | 452 |
| AvaI | CYCGRG | 1 cut(s) | 232 |
| BalI | TGGCCA | 1 cut(s) | 242 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| BbvI | GCAGC | 4 cut(s) | 87, 100, 260, 282 |
| BccI | CCATC | 3 cut(s) | 72, 396, 500 |
| BciT130I | CCWGG | 1 cut(s) | 376 |
| BcoDI | GTCTC | 1 cut(s) | 378 |
| BfaI | CTAG | 3 cut(s) | 165, 563, 678 |
| BfmI | CTRYAG | 1 cut(s) | 296 |
| BisI | GCNGC | 5 cut(s) | 89, 101, 162, 249, 296 |
| BlsI | GCNGC | 5 cut(s) | 90, 102, 163, 250, 297 |
| BmcAI | AGTACT | 1 cut(s) | 736 |
| Bme1390I | CCNGG | 1 cut(s) | 376 |
| BmeT110I | CYCGRG | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 1 cut(s) | 489 |
| BmrFI | CCNGG | 1 cut(s) | 376 |
| BmrI | ACTGGG | 1 cut(s) | 362 |
| BmsI | GCATC | 1 cut(s) | 316 |
| BmuI | ACTGGG | 1 cut(s) | 362 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| Bpu14I | TTCGAA | 1 cut(s) | 452 |
| Bsa29I | ATCGAT | 1 cut(s) | 133 |
| BsaI | GGTCTC | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 3 cut(s) | 213, 374, 375 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 337, 380, 432 |
| Bse1I | ACTGG | 2 cut(s) | 89, 357 |
| Bse3DI | GCAATG | 1 cut(s) | 243 |
| BseBI | CCWGG | 1 cut(s) | 376 |
| BseCI | ATCGAT | 1 cut(s) | 133 |
| BseDI | CCNNGG | 3 cut(s) | 213, 374, 375 |
| BseGI | GGATG | 1 cut(s) | 388 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 337, 380, 432 |
| BseMI | GCAATG | 1 cut(s) | 243 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseNI | ACTGG | 2 cut(s) | 89, 357 |
| BseXI | GCAGC | 4 cut(s) | 87, 100, 260, 282 |
| BshFI | GGCC | 2 cut(s) | 242, 490 |
| BshVI | ATCGAT | 1 cut(s) | 133 |
| BsiHKCI | CYCGRG | 1 cut(s) | 232 |
| BslFI | GGGAC | 3 cut(s) | 242, 363, 448 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 337, 380, 432 |
| BsmAI | GTCTC | 1 cut(s) | 378 |
| BsmFI | GGGAC | 3 cut(s) | 242, 363, 448 |
| BsmI | GAATGC | 1 cut(s) | 163 |
| BsnI | GGCC | 2 cut(s) | 242, 490 |
| Bso31I | GGTCTC | 1 cut(s) | 378 |
| BsoBI | CYCGRG | 1 cut(s) | 232 |
| Bsp119I | TTCGAA | 1 cut(s) | 452 |
| Bsp143I | GATC | 1 cut(s) | 134 |
| BspACI | CCGC | 1 cut(s) | 161 |
| BspANI | GGCC | 2 cut(s) | 242, 490 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspDI | ATCGAT | 1 cut(s) | 133 |
| BspMAI | CTGCAG | 1 cut(s) | 300 |
| BspQI | GCTCTTC | 1 cut(s) | 163 |
| BspT104I | TTCGAA | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 378 |
| BsrDI | GCAATG | 1 cut(s) | 243 |
| BsrI | ACTGG | 2 cut(s) | 89, 357 |
| BssECI | CCNNGG | 3 cut(s) | 213, 374, 375 |
| BssMI | GATC | 1 cut(s) | 134 |
| Bst2UI | CCWGG | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 3 cut(s) | 71, 214, 734 |
| Bst6I | CTCTTC | 1 cut(s) | 163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstBI | TTCGAA | 1 cut(s) | 452 |
| BstDEI | CTNAG | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 1 cut(s) | 213 |
| BstF5I | GGATG | 1 cut(s) | 388 |
| BstKTI | GATC | 1 cut(s) | 137 |
| BstMAI | GTCTC | 1 cut(s) | 378 |
| BstMBI | GATC | 1 cut(s) | 134 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 97, 170, 248, 304 |
| BstNI | CCWGG | 1 cut(s) | 376 |
| BstNSI | RCATGY | 1 cut(s) | 642 |
| BstSCI | CCNGG | 1 cut(s) | 374 |
| BstSFI | CTRYAG | 1 cut(s) | 296 |
| BstV1I | GCAGC | 4 cut(s) | 87, 100, 260, 282 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| Bsu15I | ATCGAT | 1 cut(s) | 133 |
| BsuRI | GGCC | 2 cut(s) | 242, 490 |
| BsuTUI | ATCGAT | 1 cut(s) | 133 |
| BtgI | CCRYGG | 1 cut(s) | 213 |
| BtsCI | GGATG | 1 cut(s) | 388 |
| Cfr13I | GGNCC | 1 cut(s) | 489 |
| ClaI | ATCGAT | 1 cut(s) | 133 |
| Csp6I | GTAC | 7 cut(s) | 18, 82, 371, 500, 518, 544, 735 |
| CviAII | CATG | 3 cut(s) | 146, 275, 639 |
| CviQI | GTAC | 7 cut(s) | 18, 82, 371, 500, 518, 544, 735 |
| DdeI | CTNAG | 1 cut(s) | 150 |
| DpnI | GATC | 1 cut(s) | 136 |
| DpnII | GATC | 1 cut(s) | 134 |
| EaeI | YGGCCR | 1 cut(s) | 240 |
| Eam1104I | CTCTTC | 1 cut(s) | 163 |
| EarI | CTCTTC | 1 cut(s) | 163 |
| Eco31I | GGTCTC | 1 cut(s) | 378 |
| Eco88I | CYCGRG | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 374 |
| FaeI | CATG | 3 cut(s) | 149, 278, 642 |
| FaqI | GGGAC | 3 cut(s) | 242, 363, 448 |
| FatI | CATG | 3 cut(s) | 145, 274, 638 |
| Fnu4HI | GCNGC | 5 cut(s) | 89, 101, 162, 249, 296 |
| FokI | GGATG | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 5 cut(s) | 89, 101, 162, 249, 296 |
| FspBI | CTAG | 3 cut(s) | 165, 563, 678 |
| GluI | GCNGC | 5 cut(s) | 89, 101, 162, 249, 296 |
| HaeIII | GGCC | 2 cut(s) | 242, 490 |
| Hin1II | CATG | 3 cut(s) | 149, 278, 642 |
| HinfI | GANTC | 4 cut(s) | 230, 256, 539, 594 |
| HphI | GGTGA | 1 cut(s) | 721 |
| Hpy166II | GTNNAC | 1 cut(s) | 178 |
| Hpy188III | TCNNGA | 3 cut(s) | 311, 392, 724 |
| Hpy8I | GTNNAC | 1 cut(s) | 178 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyAV | CCTTC | 3 cut(s) | 218, 374, 557 |
| HpyCH4III | ACNGT | 3 cut(s) | 71, 214, 734 |
| HpyCH4IV | ACGT | 2 cut(s) | 324, 520 |
| HpyCH4V | TGCA | 4 cut(s) | 103, 248, 298, 307 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 97, 170, 248, 304 |
| HpyF3I | CTNAG | 1 cut(s) | 150 |
| HpySE526I | ACGT | 2 cut(s) | 324, 520 |
| Hsp92II | CATG | 3 cut(s) | 149, 278, 642 |
| Kzo9I | GATC | 1 cut(s) | 134 |
| LguI | GCTCTTC | 1 cut(s) | 163 |
| LmnI | GCTCC | 1 cut(s) | 266 |
| LpnPI | CCDG | 7 cut(s) | 70, 249, 338, 361, 388, 405, 482 |
| Lsp1109I | GCAGC | 4 cut(s) | 87, 100, 260, 282 |
| LweI | GCATC | 1 cut(s) | 316 |
| MaeI | CTAG | 3 cut(s) | 165, 563, 678 |
| MaeII | ACGT | 2 cut(s) | 324, 520 |
| MalI | GATC | 1 cut(s) | 136 |
| MboI | GATC | 1 cut(s) | 134 |
| MboII | GAAGA | 3 cut(s) | 134, 180, 441 |
| MlsI | TGGCCA | 1 cut(s) | 242 |
| MluCI | AATT | 4 cut(s) | 29, 199, 615, 659 |
| MluNI | TGGCCA | 1 cut(s) | 242 |
| MlyI | GAGTC | 2 cut(s) | 224, 265 |
| MnlI | CCTC | 2 cut(s) | 217, 409 |
| Mox20I | TGGCCA | 1 cut(s) | 242 |
| MscI | TGGCCA | 1 cut(s) | 242 |
| MseI | TTAA | 6 cut(s) | 32, 485, 534, 552, 602, 618 |
| Msp20I | TGGCCA | 1 cut(s) | 242 |
| MspA1I | CMGCKG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 1 cut(s) | 376 |
| Mva1269I | GAATGC | 1 cut(s) | 163 |
| MvaI | CCWGG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 97, 170, 248, 304 |
| NdeII | GATC | 1 cut(s) | 134 |
| NlaIII | CATG | 3 cut(s) | 149, 278, 642 |
| NspI | RCATGY | 1 cut(s) | 642 |
| NspV | TTCGAA | 1 cut(s) | 452 |
| PaeR7I | CTCGAG | 1 cut(s) | 232 |
| PasI | CCCWGGG | 1 cut(s) | 375 |
| PciSI | GCTCTTC | 1 cut(s) | 163 |
| PctI | GAATGC | 1 cut(s) | 163 |
| PfeI | GAWTC | 2 cut(s) | 539, 594 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 337 |
| PkrI | GCNGC | 5 cut(s) | 90, 102, 163, 250, 297 |
| PleI | GAGTC | 2 cut(s) | 224, 264 |
| PpsI | GAGTC | 2 cut(s) | 224, 264 |
| Psp1406I | AACGTT | 1 cut(s) | 324 |
| Psp6I | CCWGG | 1 cut(s) | 374 |
| PspGI | CCWGG | 1 cut(s) | 374 |
| PspPI | GGNCC | 1 cut(s) | 489 |
| PspXI | VCTCGAGB | 1 cut(s) | 232 |
| PstI | CTGCAG | 1 cut(s) | 300 |
| PvuII | CAGCTG | 1 cut(s) | 251 |
| RsaI | GTAC | 7 cut(s) | 19, 83, 372, 501, 519, 545, 736 |
| RsaNI | GTAC | 7 cut(s) | 18, 82, 371, 500, 518, 544, 735 |
| SapI | GCTCTTC | 1 cut(s) | 163 |
| SaqAI | TTAA | 6 cut(s) | 32, 485, 534, 552, 602, 618 |
| SatI | GCNGC | 5 cut(s) | 89, 101, 162, 249, 296 |
| Sau3AI | GATC | 1 cut(s) | 134 |
| Sau96I | GGNCC | 1 cut(s) | 489 |
| ScaI | AGTACT | 1 cut(s) | 736 |
| SchI | GAGTC | 2 cut(s) | 224, 265 |
| ScrFI | CCNGG | 1 cut(s) | 376 |
| SfaNI | GCATC | 1 cut(s) | 316 |
| SfcI | CTRYAG | 1 cut(s) | 296 |
| Sfr274I | CTCGAG | 1 cut(s) | 232 |
| SfuI | TTCGAA | 1 cut(s) | 452 |
| SlaI | CTCGAG | 1 cut(s) | 232 |
| SmlI | CTYRAG | 1 cut(s) | 232 |
| SmoI | CTYRAG | 1 cut(s) | 232 |
| Sse9I | AATT | 4 cut(s) | 29, 199, 615, 659 |
| SsiI | CCGC | 1 cut(s) | 161 |
| SspMI | CTAG | 3 cut(s) | 165, 563, 678 |
| StyD4I | CCNGG | 1 cut(s) | 374 |
| TaaI | ACNGT | 3 cut(s) | 71, 214, 734 |
| TaiI | ACGT | 2 cut(s) | 327, 523 |
| TaqI | TCGA | 4 cut(s) | 133, 233, 366, 452 |
| TasI | AATT | 4 cut(s) | 29, 199, 615, 659 |
| TatI | WGTACW | 2 cut(s) | 17, 734 |
| TauI | GCSGC | 1 cut(s) | 164 |
| TfiI | GAWTC | 2 cut(s) | 539, 594 |
| Tru1I | TTAA | 6 cut(s) | 32, 485, 534, 552, 602, 618 |
| Tru9I | TTAA | 6 cut(s) | 32, 485, 534, 552, 602, 618 |
| TseI | GCWGC | 4 cut(s) | 88, 100, 248, 295 |
| TspDTI | ATGAA | 2 cut(s) | 134, 552 |
| TspGWI | ACGGA | 1 cut(s) | 352 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 337 |
| XapI | RAATTY | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 642 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 736 |
| XhoI | CTCGAG | 1 cut(s) | 232 |
| XspI | CTAG | 3 cut(s) | 165, 563, 678 |
| ZrmI | AGTACT | 1 cut(s) | 736 |